KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:30 2014 Check: 00 .. Name: ENSP00000215781/1-252 Len: 273 Check: 6689 Weight: 1.00 Name: ENSBTAP00000021515/1-244 Len: 273 Check: 9672 Weight: 1.00 Name: ENSTTRP00000001445/1-233 Len: 273 Check: 866 Weight: 1.00 Name: bmy_01611T0/1-223 Len: 273 Check: 8114 Weight: 1.00 Name: BACU003335/1-246 Len: 273 Check: 535 Weight: 1.00 // 1 50 ENSP00000215781/1-252 MGVLLTQRTL LSLVLALLFP SMASMAAIGS CSKEYRVLLG QLQKQTDLMQ ENSBTAP00000021515/1-244 MRAQRMQRTL LSLVLRLLL- --LCTVATGK CSGKYHELLL QLQRQADLMQ ENSTTRP00000001445/1-233 MRAQCMRRTL LSVILGLLF- --LSMTATSK CLGKYHELLL QLRRQADLMQ bmy_01611T0/1-223 ---------- ---------- ----MAATSK CLGKYHELLL QLQRQADLMQ BACU003335/1-246 MRAQRMRRTP LSVILGLLF- --LSMAATSK CLGKYHELLL QLRRQADLMQ 51 100 ENSP00000215781/1-252 DTSRLLDPYI RIQGLDVPKL REHCRERPGA FPSEETLRGL GRRGFLQTLN ENSBTAP00000021515/1-244 DPSTLLDPYI HLQGLHSPVL QEHCRERPGD FPSEDALWRL SRQDFLQTLN ENSTTRP00000001445/1-233 DTSTLLDPYI RIQGLDTPGL KEHCRERPGA FPSEDALRGL SRQGFLQTLN bmy_01611T0/1-223 DTSTLLDPYI RIQGLDTPGL KEHCRECPGA FPSEDALRGL SRQGFLRTLN BACU003335/1-246 DTSTLLDPYI RIQGLDTPGL KEHCRECPGA FPSEDALRGL SRQGFLRTLN 101 150 ENSP00000215781/1-252 ATLGCVLHRL ADLEQRLPKA QDLERSGLNI EDLEKLQMAR PNILGLRNNI ENSBTAP00000021515/1-244 TTLGLILRML SALQQDLPEA AHQQ-AEMNV R--------- ----GFGNNI ENSTTRP00000001445/1-233 ATLGLVLHRL TALYQDLPEA QQL--VGLNI R--------- ----GFRSNI bmy_01611T0/1-223 ATLGLVLHRL TALYQDLPEA QQL--VGLNI R--------- ----GFRSNI BACU003335/1-246 ATLGLVLHRL TALYQDLPEA QQL--VGLNI R--------- ----GFRSNI 151 200 ENSP00000215781/1-252 YCMAQLLDNS ---DTAEPTK AGRGASQPPT PTPASDAFQR KLEGCRFLHG ENSBTAP00000021515/1-244 HCMAQLLRGS SDPKAAEPTQ PGPGPTPLP- PTPPSSTFQR KLRNCGFLRG ENSTTRP00000001445/1-233 HCMSQLLRSS SEAETPEPTQ PGPGPTPP-- PT--SDAFQH KLKSCRFLHG bmy_01611T0/1-223 HCMSQLLRSS SEAETPEPTH PGPGPTLP-- PTPPSDAFQH KLKSCRFLRG BACU003335/1-246 HCMSLLLRSS SEAETPEPTQ PGPGPTPP-- PTPPSDAFQH KLKSCRFLRG 201 250 ENSP00000215781/1-252 YHRFMHSVGR VFSKWGE--S PNRSRRHSPH QA-------- -LRKGVRRTR ENSBTAP00000021515/1-244 YHRFMRTAGQ VLRGWGE--R QGRSRRHSPC RA-------- -LKRGARRTR ENSTTRP00000001445/1-233 YHRFMHSVGQ VLQEWGE--S RSRSRRHSPR QA-------- -LRGGARRTW bmy_01611T0/1-223 YHRFMHSVGH VLREWGE--S RSRSRRHSPR RAPGDTAPAG PCRGGARRTW BACU003335/1-246 YHCFMHSVGQ VLREWGESRS RSRSRRHSPR RAPGDTAPSG PCRGGARRMW 251 300 ENSP00000215781/1-252 PSRKGKRLMT RGQLP----- --R ENSBTAP00000021515/1-244 PFPEIRRLAP RGQPPSLWGA PAR ENSTTRP00000001445/1-233 PFRRDRRLMP RGQLP----- --R bmy_01611T0/1-223 PFWRDRRLMP RGQLP----- --R BACU003335/1-246 PFRRDRRLMP RGHLP----- --R