KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:34 2014 Check: 00 .. Name: bmy_12502T0/1-703 Len: 956 Check: 252 Weight: 1.00 Name: ENSTTRP00000008729/1-721 Len: 956 Check: 1420 Weight: 1.00 Name: BACU010164/1-726 Len: 956 Check: 5008 Weight: 1.00 Name: ENSP00000263574/1-763 Len: 956 Check: 2763 Weight: 1.00 Name: ENSBTAP00000021524/1-732 Len: 956 Check: 7582 Weight: 1.00 // 1 50 bmy_12502T0/1-703 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008729/1-721 ---------- ---------- ---------- -----ALAAN AGQG-AVAEP BACU010164/1-726 ---------- ---------- ---------- ---------- ---------- ENSP00000263574/1-763 MAATGTAAAA ATGRLLLLLL VGLTAPALAL AGYIEALAAN AGTGFAVAEP ENSBTAP00000021524/1-732 ---------- ---------- ---------- -----ALAAS AGTGFAVAEP 51 100 bmy_12502T0/1-703 ---------- -----MTA-- -PSPLPYLLC I--------- ---------I ENSTTRP00000008729/1-721 QI-AFCGKLN MHVNIQTGKW EPDPTGTQSC FGTKEEVLQY CQEMYPELQI BACU010164/1-726 ---MFCGKLN MHVNIQTGKW EPDPTGTQSC FGTKEEVLQY CQEMYPELQI ENSP00000263574/1-763 QIAMFCGKLN MHVNIQTGKW EPDPTGTKSC FETKEEVLQY CQEMYPELQI ENSBTAP00000021524/1-732 QIAMFCGKLN MHVNIQTGRW EPDPSGTQSC FGTKEEVLQY CQEMYPELQI 101 150 bmy_12502T0/1-703 TDV------- ------GRNR ---------- ----MGEFVS DVLLVPEKCQ ENSTTRP00000008729/1-721 TNVMEANQPV SVDNWCRRDK KQCKTHIVIP FKCLVGEFVS DVLLVPEKCQ BACU010164/1-726 TNVVEANQPV SVDNWCRRDK KQCKTHIVIP FKCLVGEFVS DVLLVPEKCQ ENSP00000263574/1-763 TNVMEANQRV SIDNWCRRDK KQCKSRFVTP FKCLVGEFVS DVLLVPEKCQ ENSBTAP00000021524/1-732 TNVMEANQPV SVDNWCRRDK KQCKSHIVIP FKCLVGEFVS DVLLVPEKCL 151 200 bmy_12502T0/1-703 FFHKERMEVC ENHQHWHTVV KEACLTQGMT LYSYGMLLPC GVDQFHGTEY ENSTTRP00000008729/1-721 FFHKERMEVC ENHQHWHTVV KEACLTQGMT LYSYGMLLPC GVDQFHGTEY BACU010164/1-726 FFHKERMEVC ENHQHWHTVV KEACLTQGMT LYSYGMLLPC GVDQFHGTEY ENSP00000263574/1-763 FFHKERMEVC ENHQHWHTVV KEACLTQGMT LYSYGMLLPC GVDQFHGTEY ENSBTAP00000021524/1-732 FFHKERMEVC ENHQRWHTVV KEACLTQEMT LYSYSMLLPC GVDQFHGTEY 201 250 bmy_12502T0/1-703 VCCPQTKIVE SAVSKEEEEE EEEEEEEDED EEEDYDIYKS EFPTEADLED ENSTTRP00000008729/1-721 VCCPQTKVVE SAVSKEEEED DEEDDEED-D EEEDYDIYKS EFPTEADLED BACU010164/1-726 VCCPQTKIVE SAVSKEEEEE EEEE-----D EEEDYDIYKS EFPTEADLED ENSP00000263574/1-763 VCCPQTKIIG S-VSKEEEEE DEEEEEEE-D EEEDYDVYKS EFPTEADLED ENSBTAP00000021524/1-732 VCCPQTKVVQ TAVSKEDEED DDDNDDE--D QEEDYDVYKS EFPTEADLED 251 300 bmy_12502T0/1-703 FTEAAVD--- ----EDEEGE EEVVEDRDYH YDTFKGDDHN EESPTEPSSD ENSTTRP00000008729/1-721 FTEAAVD--- -------EGE EEVVEDRNYY YDAFKGDGRH EESPTQSSRH BACU010164/1-726 FTEAAVD--- ----EDEEDE EEVVEDRDYY YDTFKGDDHN EESPTEPSSD ENSP00000263574/1-763 FTEAAVD--- -EDDEDEEEG EEVVEDRDYY YDTFKGDDYN EENPTEPGSD ENSBTAP00000021524/1-732 FTEATADGED DDEEEEEEGE EEVVEDRDYY YDTFKGDDYN EESPTEPSSY 301 350 bmy_12502T0/1-703 GTAAEKEISH SVQETAFLTA VCSQEALTGP CRAVMPRWYF DLSKGKCVRF ENSTTRP00000008729/1-721 GTAAEKEISY GVR------A VCSQEALTGP CRAVMPRWYF DLSKGKCVRF BACU010164/1-726 GTAAEKEISH GVQ------A VCSQEALTGP CRAVMPRWYF DLSKGKCVRF ENSP00000263574/1-763 GTMSDKEITH DVK------A VCSQEAMTGP CRAVMPRWYF DLSKGKCVRF ENSBTAP00000021524/1-732 RAAAEEEITH DIR------A VCSQEALTGP CRAVMPRWYF DLSKGKCVRF 351 400 bmy_12502T0/1-703 IYGGCGGNRN NFESEEYCMA VCKVMNLALL SCRQLSAQFS VSCAHRGPVE ENSTTRP00000008729/1-721 IYGGCGGNRN NFESEEYCMA VCKVM----- ---------- ---------- BACU010164/1-726 IYGGCGGNRN NFESEEYCMA VCKVM----- ---------- ---------- ENSP00000263574/1-763 IYGGCGGNRN NFESEDYCMA VCKAM----- ---------- ---------- ENSBTAP00000021524/1-732 IYGGCGGNRN NFESEDYCMA VCKAM----- ---------- ---------- 401 450 bmy_12502T0/1-703 VEVVVVVVEE VMVEVVVEVM VVEEVMVMVE VMVVVEVMVE VVEEVMVVVE ENSTTRP00000008729/1-721 ---------- ---------- ---------- ---------- ---------- BACU010164/1-726 ---------- ---------- ---------- ---------- ---------- ENSP00000263574/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021524/1-732 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_12502T0/1-703 EEVMVTVEVM VEVVEVMVVV EEEVMVVMVE VMVEEEVVVV VVVVEEERGA ENSTTRP00000008729/1-721 ---------- ---------- ---------- ---------- ---------- BACU010164/1-726 ---------- ---------- ---------- ---------- ---------- ENSP00000263574/1-763 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021524/1-732 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_12502T0/1-703 DPWREPSGHF VSVPPTPLPT NDVDVYFETS ADDNEHARFQ -------KAK ENSTTRP00000008729/1-721 ---------- --IPPTPLPT NDVDVYFETS ADDNEHARFQ -------KAK BACU010164/1-726 ---------- ---NLALLSF RQLSAQFSVS CAHRGPVEVE VVVEVVVEVM ENSP00000263574/1-763 ---------- --IPPTPLPT NDVDVYFETS ADDNEHARFQ -------KAK ENSBTAP00000021524/1-732 ---------- --IPPTPLPT NDVDVYFETS ADDNEHARFQ -------KAK 551 600 bmy_12502T0/1-703 EQLEIRHRNR M--------- ---------- ---------- --------DR ENSTTRP00000008729/1-721 EQLEIRHRNR M--------- ---------- ---------- --------DR BACU010164/1-726 EVVEVMVVEM VMVEVVEEVM VTVEVMVVVV VEVMVEVMEV VEVMVVVEEE ENSP00000263574/1-763 EQLEIRHRNR M--------- ---------- ---------- --------DR ENSBTAP00000021524/1-732 EQLEIRHRNR M--------- ---------- ---------- --------DR 601 650 bmy_12502T0/1-703 VKKEWEEAEL QAKNLPKAER QTLIQHFQAM VKALEKEAAS EKQQLVETHL ENSTTRP00000008729/1-721 VKKEWEEAEL QAKNLPKAER QTLIQHFQAM VKALEKEAAS EKQQLVETHL BACU010164/1-726 VKKEWEEAEL QAKNLPKAER QTLIQHFQAM VKALEKEAAS EKQQLVETHL ENSP00000263574/1-763 VKKEWEEAEL QAKNLPKAER QTLIQHFQAM VKALEKEAAS EKQQLVETHL ENSBTAP00000021524/1-732 VKKEWEEAEL QAKNLPKAER QTLIQHFQAM VKALEKEAAS EKQQLVETHL 651 700 bmy_12502T0/1-703 ARVEAMLNDR RRVALENYLA ALQSDPPRPH RILQALRRYV RAENKDRLHT ENSTTRP00000008729/1-721 ARVEAMLNDR RRVALENYLA ALQSDPPRXX XXXXXXXXXX XXXXXXXXXX BACU010164/1-726 ARVEAMLNDR RRVALENYLA ALQSDPPRPH RILQALRRYV RAENKDRLHT ENSP00000263574/1-763 ARVEAMLNDR RRMALENYLA ALQSDPPRPH RILQALRRYV RAENKDRLHT ENSBTAP00000021524/1-732 ARVEAMLNDR RRVALENYLA ALQSDPPRPH RILQALRRYV RAENKDRLHT 701 750 bmy_12502T0/1-703 IRHYQHVLAV DPEKAAQMKS QVMTHLHVIE ERRNQSLSLL YKVPYVAQEI ENSTTRP00000008729/1-721 XXXXXXXXXX XXXXXXXXXX XVMTHLHVIE ERRNQSLSLL YKVPYVAQEI BACU010164/1-726 IRHYQHVLAV DPEKAAQMKS QVMTHLHVIE ERRNQSLSLL YKVPYVAQEI ENSP00000263574/1-763 IRHYQHVLAV DPEKAAQMKS QVMTHLHVIE ERRNQSLSLL YKVPYVAQEI ENSBTAP00000021524/1-732 LRHYQHVLAV DPEKAAQMRS QVMTHLHVIE ERRNQSLSLL YKVPYVAQEI 751 800 bmy_12502T0/1-703 QEEIDELLQE QRADMDQFTA SISETPVDVR VSSEESDEVL PFRPLHPFPP ENSTTRP00000008729/1-721 QEEIDELLQE QRADMDQFTA SISETPVDVR VSSEESDEVL PFHPLHPFPS BACU010164/1-726 QEEIDELLQE QRADMDQFTA SISETPVDVR VSSEESDEVL PFRPLHPFPP ENSP00000263574/1-763 QEEIDELLQE QRADMDQFTA SISETPVDVR VSSEESEEIP PFHPFHPFPA ENSBTAP00000021524/1-732 QEEIDELLQE QRADMDQFSS SFSETPVDVR VSSEESDEIP PFHSLHPFPS 801 850 bmy_12502T0/1-703 LPENEDTQPE VYHPMKTDVA VG-------- ---------- ---------- ENSTTRP00000008729/1-721 LPENEDTQPE VYHPMKTGSA LGEQEGGLIG AEEKVINSKK KVDENMVIDE BACU010164/1-726 LPENE----- -------GSA LGEQEGGLIG AEEKVINSKK KVDENMVIDE ENSP00000263574/1-763 LPENEDTQPE LYHPMKKGSG VGEQDGGLIG AEEKVINSKN KVDENMVIDE ENSBTAP00000021524/1-732 LPENEDSQPE LFHPMKKGSA LGEQDGGLIG AEEKVINSKK KVDENMVIDE 851 900 bmy_12502T0/1-703 ---------- ---------- ----GPEXPD LRHPEPSVRG F---AYPVAI ENSTTRP00000008729/1-721 TLDVKEMILN AERVGGLEEG PESVGPLRED FSLSSSALIG LLVIAVAIAT BACU010164/1-726 TLDVKEMILN AERVGGLEEG PESVGPLRED FSLSSSALVG LLVIAVAVAT ENSP00000263574/1-763 TLDVKEMIFN AERVGGLEEE RESVGPLRED FSLSSSALIG LLVIAVAIAT ENSBTAP00000021524/1-732 TLDVKEMIFN AERVGGLEEE PESVGPLRED FSLSSSALIG LLVVAVAIAT 901 950 bmy_12502T0/1-703 LSCPS----- ---------G CPE-----ST EEYRVTKVEP S--------- ENSTTRP00000008729/1-721 VIVISLVMLR KRQYGTISHG IVEVDPMLTP EERHLNKMQN HGYENPTYKY BACU010164/1-726 VVVISLVMLR KRQYGTISHG IV-------- -ERHLNKMQN HGYENPTYKY ENSP00000263574/1-763 VIVISLVMLR KRQYGTISHG IVEVDPMLTP EERHLNKMQN HGYENPTYKY ENSBTAP00000021524/1-732 IIVISLVMLR RRQYGSISHG IVEVDPMLTP EERHLSKMQN HGYENPTYKY 951 1000 bmy_12502T0/1-703 ------ ENSTTRP00000008729/1-721 LEQMQI BACU010164/1-726 LEQMQI ENSP00000263574/1-763 LEQMQI ENSBTAP00000021524/1-732 LEQMQI