KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:36 2014 Check: 00 .. Name: ENSTTRP00000015344/1-526 Len: 797 Check: 7251 Weight: 1.00 Name: bmy_13991T0/1-337 Len: 797 Check: 4738 Weight: 1.00 Name: ENSP00000337363/1-561 Len: 797 Check: 8531 Weight: 1.00 Name: ENSBTAP00000021549/1-642 Len: 797 Check: 5772 Weight: 1.00 Name: BACU012106/1-767 Len: 797 Check: 442 Weight: 1.00 // 1 50 ENSTTRP00000015344/1-526 ---------- ------MSWI WI-KKGRVAA LSLSDGLWIV KV-EDSPGGG bmy_13991T0/1-337 ---------- ------MSWI RTASQVRVAA LPLSDGPWIV KVEEDSPGGG ENSP00000337363/1-561 MNSSLTAQRR GSDAELGPWV -MAARSKDAA PSQRDGLLPV KVEEDSPGSW ENSBTAP00000021549/1-642 ---------- ------MSWS WTASQSTIAP PALGDGLWTV KVEEDSFGSG BACU012106/1-767 ---------- ------MSWI WTASQGRVAA LPLSDGPWIV KVEEDSPGDG 51 100 ENSTTRP00000015344/1-526 ESIYQGTVLD LETSRRHFKA VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13991T0/1-337 ESDPPGDCPD PETSRRHFRR FRFQEVAGPE QALSRLRELC RRWLRPEVHS ENSP00000337363/1-561 EPNYPAASPD PETSRLHFRQ LRYQEVAGPE EALSRLRELC RRWLRPELLS ENSBTAP00000021549/1-642 ESDRPWDCPD PETFRCHFRQ FRYQEVAGPE EALSRLRELC CRWLRPEVHS BACU012106/1-767 ESDPPGDCPD PETSRQHFRR FRYQEVTGPE EALSRLRELC RRWLRPEVHS 101 150 ENSTTRP00000015344/1-526 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13991T0/1-337 KEQILELLVL EQFLTILPQE LQAWVRKHCP ESGEEAAALV WALQRELDGT ENSP00000337363/1-561 KEQILELLVL EQFLTILPEE LQAWVREHCP ESGEEAVAVV RALQRALDGT ENSBTAP00000021549/1-642 KEQILELLVL EQFLTILPQE IQAWVRKHCP QSGEEAAAVV RSLQRQPAGT BACU012106/1-767 KEQILELLVL EQFLTILPQE LQAWVRKHCP ESGEEAAALV WALQRELDGT 151 200 ENSTTRP00000015344/1-526 XXX------- ---XXGLVTV QDVAVSLTWE EWERLGPAQR DLYRESAPKD bmy_13991T0/1-337 XXQ------- -----GLVTV PDVAVSLTWE EWERLDPAQR DLYRESAPKD ENSP00000337363/1-561 SSQ------- -----GMVTF EDTAVSLTWE EWERLDPARR DFCRESAQKD ENSBTAP00000021549/1-642 SRQ------- -----GLVTV RDVAVSLTWE EWERLYPAQK HFFRESAPKD BACU012106/1-767 SRQVRSERVL VVGMEGLVTV PDVAVSLTWE EWERLDPAQR DLYRESAPKD 201 250 ENSTTRP00000015344/1-526 YGNAVSPSLE TRTENKELIL KQEILEEVEP QGQLQ-ESQE KGPLSSECGV bmy_13991T0/1-337 YGNAVSPNHP --------YL SVKCLSIAEL FTRSFSGLKK SAPEIPASYQ ENSP00000337363/1-561 SGSTVPPSLE SRVENKELIP MQQILEEAEP QGQLQEAFQG KRPLFSKCGS ENSBTAP00000021549/1-642 HGNAVSPSSE TRIVNKELIP KQEILE-VEL QGQLQ-GFQE KAPLSSECGD BACU012106/1-767 YGNAVSPSLE TRIENKELIL KQEIQEEVEP QGQLQ-GSQE KGPRSSECGD 251 300 ENSTTRP00000015344/1-526 AHEDRIEKPS XXXXXXXXXX XXXXXXXXXX XXX-XXXXXX XXXXXXXXXX bmy_13991T0/1-337 SRPASREPLL PAP----RAH APYPAVLA-- ----RPGRVD ---------- ENSP00000337363/1-561 THEDRVEKQS GDPLPLKLEN SPEAEGLNSI SDVNKNGSIE GEDSKNNELQ ENSBTAP00000021549/1-642 A-QDRREKSL GDPSSLKREN SPEDQGVTHI SDL-RNGPSE EGDVKNKEFR BACU012106/1-767 AHEDRIEKPS GDPSLLKLEK SPEDQGVTSI SDL-KSAPRE EGDSKNNEFG 301 350 ENSTTRP00000015344/1-526 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13991T0/1-337 ----SQDFKM ASIVPVKEK- ---------- ---------- ---------- ENSP00000337363/1-561 NSARCSNLVL CQHIPKAERP TDSEEHGNKC KQSFHMVTWH VLKPHKS-DS ENSBTAP00000021549/1-642 TSAESSDFVA GQYVPTAGRP ATGDEYGNNC QHRLDMV--- --KPHESLNS BACU012106/1-767 PSAKSSNFVP AQHIQTAERP ITSDERGNNC KHRLDTV--- --KPHESLDS 351 400 ENSTTRP00000015344/1-526 XGNYRHSSL- -EQRRFHEER -YTCD-CEKS FKQRSDLF-- ---------- bmy_13991T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000337363/1-561 GDSFHHSSLF ETQRQLHEER PYKCGNCGKS FKQRSDLF-- ---------- ENSBTAP00000021549/1-642 EENRHHSGLF ETQRWFHEER PYTCDTCEKS FKQRSDLLKH HRIHTGERPY BACU012106/1-767 GENCHHSSLL EAQRRFHEER PYMCDTCEKS FKQRSDLFKH QRTHTGEKPY 401 450 ENSTTRP00000015344/1-526 ---------- ---------- ---------- ---------- ---------- bmy_13991T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000337363/1-561 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021549/1-642 GCSVCGRRFS QSATLIKHQR THTGEKPYTC PRCGDSFRQS SNLSRHQRTH BACU012106/1-767 GCSVCGKSFS QSATLVKHQR THTGEKPYTC PKCGDSFRQS SNLSRHQRVH 451 500 ENSTTRP00000015344/1-526 ---------- ---------- ---------- ---------- ---------- bmy_13991T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000337363/1-561 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021549/1-642 LGEKHYTC-- --------NN FR-------- ---------- ---------- BACU012106/1-767 MGEKHYMCHE CGEICRISNH FRHQRTHQGE RPYTCEECAK SFKRCSDLSK 501 550 ENSTTRP00000015344/1-526 ---------- ---------- ---------- ---------- ---------- bmy_13991T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000337363/1-561 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021549/1-642 ---------- ---------- ---------- ---------- ---------- BACU012106/1-767 HQRIHTGEKP YECQECGKSF SQSATLVKHQ RTHTGEKPYT CPKCGDSFRQ 551 600 ENSTTRP00000015344/1-526 ---------- ---------- ---------- ---------- ---------- bmy_13991T0/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000337363/1-561 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021549/1-642 ---------- ---------- ---ETCHTSS HFSHQRTHNE ERPYLCEECD BACU012106/1-767 SSHLNRHQRV HMGEKHYTCH ECGEICRISN HFRHQRTHQG ERPYTCEECA 601 650 ENSTTRP00000015344/1-526 ---------- KHQRTHTGEK PYWCSVCGKS FSQSATLVKH QRTHTGEKPY bmy_13991T0/1-337 ---------- KLLEVKLGEL PSWILM---- ---------- -------RDF ENSP00000337363/1-561 ---------- RHQRIHTGEK PYGCQECGKS FSQSAALTKH QRTHTGEKPY ENSBTAP00000021549/1-642 KSFKRCSDLS KHQRIHTGEK PYGCPVCGRR FSQSATLIKH QRTHTGEKPY BACU012106/1-767 KSFKRCSDLS KHQRIHTGEK PYECQECGKS FSQSATLVKH QRTHTGEKPY 651 700 ENSTTRP00000015344/1-526 TCPKCGDSFR QSSNLSRHQR VHMGEKHYTC HECGEICRIS NHFRHQRTHQ bmy_13991T0/1-337 TPKGIAGAFQ RGYY------ -----RYY-- ---------- ---------- ENSP00000337363/1-561 TCLKCGERFR QNSHLNRHQS THSRDKHFKC EECGETCHIS NLFRHQRLHK ENSBTAP00000021549/1-642 TCPKCGDSFR QSSHLSRHQR THLGEKHYTC KECGENCRTS SRFRHQRTHK BACU012106/1-767 TCPKCGDSFR QSSHLNRHQR VHMGEKHYMC HECGEICRIS NHFRHQRTHQ 701 750 ENSTTRP00000015344/1-526 GERPYTCEEC AKSFKRCSDL SKHQRIHTGE KPYECQECGK SFSQSATLVK bmy_13991T0/1-337 ---------- ---------- NKYVNVKKG- -----SIAGL SMVLAV---- ENSP00000337363/1-561 GERPYKCEEC EKSFKQRSDL FKHHRIHTGE KPYGCSVCGK RFNQSATLIK ENSBTAP00000021549/1-642 AERPHTCEEC NKSFKRSSDL SKHQRIHTGE KPYGCSVCGK HFSQSATLIK BACU012106/1-767 GERPYTCEEC AKSFKRCSDL SKHQRIHTGE KPYECQECGK SFSQSATLVK 751 800 ENSTTRP00000015344/1-526 HQRTHTGEKP YTCPKCGDSF RQSSHLNRHQ RV-------- ------- bmy_13991T0/1-337 ---------- YVLFNYCRSY KE----LKHQ RLRKYH---- ------- ENSP00000337363/1-561 HQRIHTGEKP YKCLECGERF RQSTHLIRHQ RIHQNKVLSA GRGGSRL ENSBTAP00000021549/1-642 HRRTHTGEKP YRCLDCGGSF RQSSHLVRHQ RIHRNKVPSF ------- BACU012106/1-767 HQRTHTGEKP YRCLECGDSF RQSSHLIRHQ RIHRNKAPSF -------