KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:53 2014 Check: 00 .. Name: ENSP00000374049/1-1184 Len: 1212 Check: 4652 Weight: 1.00 Name: ENSTTRP00000009945/1-1128 Len: 1212 Check: 3167 Weight: 1.00 Name: ENSBTAP00000021610/1-1177 Len: 1212 Check: 3244 Weight: 1.00 Name: BACU013838/1-529 Len: 1212 Check: 1902 Weight: 1.00 Name: bmy_12043T0/1-847 Len: 1212 Check: 8937 Weight: 1.00 // 1 50 ENSP00000374049/1-1184 MKKYRKISIG CFAMATQTSH ---------- VFHGQ----- -----ENMFL ENSTTRP00000009945/1-1128 MEKCRKISIG CFIMATQTSP ---------- IFHGQ----- -----DNKFL ENSBTAP00000021610/1-1177 -------ALD VFTMATQISD ---------- VFHGQ----- -----DSTFL BACU013838/1-529 -MGIISLTVT CGLLVASHWR REATKYARWI AFTGNIVLRA GGTTVDKEVM bmy_12043T0/1-847 ---------- ---MATQTSH ---------- IFHGQ----- -----DNKFL 51 100 ENSP00000374049/1-1184 E-------NH CIRRNTGRDS KKPLKQKNMN GLGQNSDNGL LVTHVNQTQD ENSTTRP00000009945/1-1128 E-------NH CMRRNNDRDP KKQLNQKNIN ERGQNLDNGL LVTHINQTQD ENSBTAP00000021610/1-1177 E-------NH CMRRSNDRDP QKQLNQKNIN ELDQKLDNGL LVTHVNQTQD BACU013838/1-529 GLLLRRAVTT CMRRNNDRDP KKQLNQKNIN ERGQKLDNGL LVTHINQTQD bmy_12043T0/1-847 E-------NH CMRRNNDRDP KKQLNQKNIN ERGQKLDNGL LVTHINQTQD 101 150 ENSP00000374049/1-1184 LLRLQGSETQ -SSDWEDSED WLSAHSLKCQ KLTLADLISQ GTEVLEEGTN ENSTTRP00000009945/1-1128 LLRLQGDETQ LSSAWEDSED WLLTHNLKSM KLTLADLISQ GTAMLKEGSN ENSBTAP00000021610/1-1177 LLRLQGDETQ -PSVWENSED WLSAHSLKSK KLTLADLLCQ GTAVLEEASS BACU013838/1-529 LLRLQGDETQ LPSAWEDSED WLLTHNLKSM KLTLADLISQ GTAMLKEGSN bmy_12043T0/1-847 LLRLQGDETQ LPSAWEDSED WLLTHNLKSM KLTLADLISQ GTAMLKEGSN 151 200 ENSP00000374049/1-1184 VVQKICFSTQ IIRHFESKLS DTIEVYQERI QWLTENSKKA FGLIKGARVS ENSTTRP00000009945/1-1128 VTRKMHISTQ TIHQLESKLS EAIELYQQRI QWLTENSKKV FGLIKGARVG ENSBTAP00000021610/1-1177 VTKKMHFPTQ TVHQFEAKLS EAIELYQQRI QWLTENSKKA FGLIKGARVG BACU013838/1-529 VTRKMHISTQ TIHQFESKLS EAIELYQQRI QWLTENSKKA FGLIKGARVG bmy_12043T0/1-847 VTRKMHISTQ TIHQFESKLS E--------- ---------- --------VG 201 250 ENSP00000374049/1-1184 ILIDVSAISS GPQKEEFQKD LMSLIDEQLS HKEKLFVLSF GTNAGSLWPD ENSTTRP00000009945/1-1128 VLIDVSAVSS GPQKEEFQSD LMSLIDEQLS HKEKLYVLSF GTTTSTLWPS ENSBTAP00000021610/1-1177 ILIDVAAVSN DPQKEEFQND LMNLIDEQLS HKEKLYILSF GATTSALWPN BACU013838/1-529 ILIDVSAVSS GPQKEEFQND LMSLIDEQLS HKEKLYVLSF GTTTGSLWPS bmy_12043T0/1-847 ILIDVSAVSS GPQKEEFQND FMSLIDEQLS HKEKLYVLSF GTTTTTLWPS 251 300 ENSP00000374049/1-1184 PMEVSASTLQ ELKLWVKTLQ PDGGSNLLQA LKKIFTLKGL DSLVAIMRSC ENSTTRP00000009945/1-1128 PVEVGTSSLQ EL-LWVKKLQ PDRGSNLLEA LKKIFALKGL NSLVIIMGSX ENSBTAP00000021610/1-1177 PTEVSTSSLQ ELKLWVKKLK PDRGSNLLQA LKKVFVLKGL NSLVTIMGSC BACU013838/1-529 PVEVGTSSLQ ELKLWVKKLQ PDRGSNLLQA LKKIFTLKGL NSLVTIMGSC bmy_12043T0/1-847 PVEVGTSS-- ---------- ---------- ---------- ---------- 301 350 ENSP00000374049/1-1184 PDQPSEILSD YIQQSTMGRD LIIHFITYRC DDQMPPAVLK NLAEAVRGYY ENSTTRP00000009945/1-1128 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXADLK HLAEALGGYY ENSBTAP00000021610/1-1177 PDQPSEILSD YIQQSTTGRD LITHIITYKC DDQVPPAVLK NLVEAFGGYY BACU013838/1-529 PDQPSEILSE YIQQSTMGRD LITHIVTYKC SDQVPPAVLK NLAEALGGYY bmy_12043T0/1-847 PDQPSEILSE YIQQSTMGRD LITHIVTYKC DDQVPPAVLK NLAEALGGYY 351 400 ENSP00000374049/1-1184 HCYSPKMEHY TSRDMDELLA EIQKAQSLLS HVQALQHSSP CEALTCTMEE ENSTTRP00000009945/1-1128 HCYSPETEIY SSREVDELLA EIQEAQSLRG HVQALHQSAS CEERTGSMHE ENSBTAP00000021610/1-1177 HCYSPETEIC SSREVDELLA EIQKAQSLRD HVQALHPNAR CEEPTSVMQE BACU013838/1-529 HCYSPETEIY SSREVDELLA EIQKAQSLRG HVQALHQSAP WEEPTGLMHE bmy_12043T0/1-847 HCYSPETEIY SSREVDELLA EIQKAQSLRG HVQALHQSAP WEEPTGLMHE 401 450 ENSP00000374049/1-1184 ISTEITNGPL ISLLPKPPKH DAPLTIEFPN LDKTSAEWLK VNGLKAKKLS ENSTTRP00000009945/1-1128 ISTEVAKRPL TSLLPKPPKH EDPLTIEFPN LDKTSAEWLK TNSLKAKKLS ENSBTAP00000021610/1-1177 ISTEVAKSSL MSLLPKPPKH EDPLMIEFPN LDMTSAEWLK TNSLKAKKLS BACU013838/1-529 VG-EIAKRPL TSLLPKPPKH EDPLTIEFPN LDKTSAEWLK TNSLKAKKLS bmy_12043T0/1-847 ISTEIAKRPL TSLLPKPPKH EDPLTIEFPN LDKTSAEWLK TNSLKAKKLS 451 500 ENSP00000374049/1-1184 LYQVLAPNAF SPVEEFVPIL QKTVSSTIHE KAMIQFEWHD GTVKNIHVDP ENSTTRP00000009945/1-1128 LYQVLAPNAF SPVEEFVPIL RKTVSATIHE KAMVQFEWHD GTMKNIHVDL ENSBTAP00000021610/1-1177 LYQVLAPNAF SPVEEYVPIL RKTVSSTIHE KAMVQFEWHD GTVKNIHVDL BACU013838/1-529 LYQVLAPNAF SPVEEFVPIL RKTVSSTIYE VTQIQ----- ---------- bmy_12043T0/1-847 LYQVLAPNAF SPVEEFVPIL RKTVSSTIYE KAMVQFEWHD GTMKNIHVDL 501 550 ENSP00000374049/1-1184 PFLYKYQQQL SRAMRMYERR IEWLSLASRR IWGTVCEKRV VVLLDISATN ENSTTRP00000009945/1-1128 PFLYEYQKQL SRAMRMYERR IEWLSLASRR IWGTVCEKXX XXXXXXXXXX ENSBTAP00000021610/1-1177 PFLYEYQKQL SRAMRMYERR IEWLSLASRR IWGTVCEKRV VILLDISVTN BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 PFLYEYQKQL SRATRMYERR IEWLSLASRR IWGTVCEKRV VILLDISVTN 551 600 ENSP00000374049/1-1184 SMYIIHIQHS LRLLLEEQLS NKDCFNLIAF GSTIESWRPE MVPVSHNNLQ ENSTTRP00000009945/1-1128 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF GSTIESWRPE MVAASHSNLQ ENSBTAP00000021610/1-1177 SMYIIHIQHS LRRLLEEQLS NKDCFNIIAF GSTIESWRPE MVAASHSNLQ BACU013838/1-529 ---------- ---------- ---------- -SSVQSFAGE LLCG------ bmy_12043T0/1-847 SMYIIHIQHS LRLLLEEQLS NKDCFNIIAF GSTIESWRPE MVAASHSNLQ 601 650 ENSP00000374049/1-1184 SAWRWALNLR CRGSRNVLSA LRKAVEVDFK DKDKHQSQGI YLFTGGIPDQ ENSTTRP00000009945/1-1128 SAWRWVLSLQ CQGSRNVLSA LRKAVEVDFK DKDKQQSQGI YLFTGGIPDQ ENSBTAP00000021610/1-1177 SAWRWVLNLQ CQGSRNVLSA LRKAVEVDFK DKEEQQSQGI YLFTGGIPDQ BACU013838/1-529 -----ISFLK CSGNR----- ---------- ---------- ---------- bmy_12043T0/1-847 SAWRWVLSLQ CQGSRNVLSA LRKAVEVDFK DKDKQQSQGI YLFTGGIPDQ 651 700 ENSP00000374049/1-1184 DMPTLSAYMA EACGGCDLQL NVCLFYVGEP KMDTTPPARY ASHTDTAAAY ENSTTRP00000009945/1-1128 DVAMLSAYVA EARVGCDLQL NVCLFYVGES QMDTTPPACY ASRSDTAAAY ENSBTAP00000021610/1-1177 DMAMLSAYMA EACGGCDFHL NVCLFYVGES QTDTMPPACY ASRTDTAAAY BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 DMAMLSAYMA EARVGCDFQL NVCLFYVGES QMDTTPPACY ASRSDTAAAY 701 750 ENSP00000374049/1-1184 KEVTRAAGGR FHWFGDTGIY ESDDINSIMS EMEKALNYSQ KCAFLMASLK ENSTTRP00000009945/1-1128 REFTRAAGGR FHWFGDTGIY ESDDISAITS EMEKALNYSQ KCALLVSSLK ENSBTAP00000021610/1-1177 REVTRAAGGR FHWFGDTGIY ESDDINAITS EMEKALNYSQ KCALLVSSLK BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 REVTRAAGGR FHWFGDTVC- ----LTRVLS E-EPVWKRTG KCS------- 751 800 ENSP00000374049/1-1184 NHSGKVLGSS ALPKEKPKTL QLRSQPKKLC PPRPTVPLGA RMSIKDDPDR ENSTTRP00000009945/1-1128 NQSGKQQESA ALLRDKPKTL QLRRQPGKFC PSKPRARSVA RTSIKDDPDR ENSBTAP00000021610/1-1177 NHSGKEQQSV ALLKEKPNVL KPRSQPRKFC PSRPTAPSVA RMSIKDDPDR BACU013838/1-529 ---------- ---------- ---------- ---------- --SHKTEP-K bmy_12043T0/1-847 ---------- ---------- -----PPERK AKDAQAEKSA QESIKDDPAR 801 850 ENSP00000374049/1-1184 EKSPPLKSLK WRPLSSRVGI SPAAAQPTKE GMMELRRKTK SREAETSLLL ENSTTRP00000009945/1-1128 EKSPPLKALL WSPLS--ATA QP-----VKE GTADRRRKTK SRDAETSLSL ENSBTAP00000021610/1-1177 EKSPALKALP WRPLSGKAGI PPAAAPPGKE RTTERRKKTQ SRDAEIALSL BACU013838/1-529 EQGP--EGLE W------GGV HP-------- ---------- ---------- bmy_12043T0/1-847 EKSPPLKALL WSPLSGKAGV PP-------- ---------- ---------- 851 900 ENSP00000374049/1-1184 FYTEKGNDVG SVYKKYPQGR GLRRTSSSID LPRKDTVCSS QEWVAKYGLK ENSTTRP00000009945/1-1128 FYTETGNNVG FVYRKYPQGR ALRRTSFSIE LPRKDTVCSS LEWVANYGLK ENSBTAP00000021610/1-1177 FYTETGNNVG SVYKKYPQGR GLRRTRSSIE LPRKDTVCSS QEWVANYGLK BACU013838/1-529 ---------- ---------- ---------- ---------- -------GL- bmy_12043T0/1-847 ---------G FVYRKYPRGR GLRRTSSSIE LPRKDTVCSS REWVANYGLK 901 950 ENSP00000374049/1-1184 KLKLEISRCM GPNCTHQKSG QRSASAKHCS IFPSVEIHGV VRHIQWTPRE ENSTTRP00000009945/1-1128 KLKMEISRYL GPKCTHQKST QTSASAKYCS IFPSIEINGM VRHSQCTPRE ENSBTAP00000021610/1-1177 KLKMEVSRYL GPNCTHQKSV QTSASAKYCS VFPSIEINGT VRHIECTPRE BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 KLKMEISRYL GPNCTHQKSI QTSASAKYCS IFPSIEINGM VRHIQCTPRE 951 1000 ENSP00000374049/1-1184 MEVYIRHLEK VLRRYVQRLQ WLLSGSRRLF GTVLESKVCI LLDTSGSMGP ENSTTRP00000009945/1-1128 IEAYITHLEK VMRRYVQRLQ WLLSGSRRLF GAILESKVCI LLDTSGSMGP ENSBTAP00000021610/1-1177 MEEYIIHLDK LMRRYIQRLQ WLLSGSRRLF GVILESKVCI LLDTSGSMGP BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 IEAYITHLEK VMRCYVQRLQ WLLSGEPSCY PGGRRSVMGS GRATPGTPGS 1001 1050 ENSP00000374049/1-1184 YLQQVKTELV LLIWEQLRKC CDSFNLLSFA ESFQSWQDTL VETTDAACHE ENSTTRP00000009945/1-1128 YMQQVKTELA LLIWEQLRKH CDSFNLLSFA EGLQPWQDTL VGTTDAACHE ENSBTAP00000021610/1-1177 YLQQVKTELT LLIWEQLRKH CDSFNLLSFA EGLQPWQDTL VETTDAACHK BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 VLPRLGTH-- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000374049/1-1184 AMQWVTHLQA QGSTSILQAL LKAFSFHDLE GLYLLTDGKP DTSCSLVLNE ENSTTRP00000009945/1-1128 AVKWVTNLHA QGSTSVLQAL LATFSXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000021610/1-1177 AMQWVTCLQA QGSTSVLQAL LKAFSFPDVE GLYLLTDGKP DTSCSLILSE BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000374049/1-1184 VQKLREKRDV KVHTISLNCS DRAAVEFLRK LASFTGGRYH CPVGEDTLSK ENSTTRP00000009945/1-1128 XXXXXXXXXX XXXXXXXXXX XXTAVNFLRD LASLTGGRYH CPVGEDSLLK ENSBTAP00000021610/1-1177 VQRLKEKRDI KVHTISPDCS CRTAASFLRD LAALTRGRYH CPVGEDSLLE BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 ---------- ---------- ---------- ---------- -------RLS 1151 1200 ENSP00000374049/1-1184 IHSLLTKGFI NEKDPTLPPF EGDDLRILAQ EITKARSFLW QAQSFRSQLQ ENSTTRP00000009945/1-1128 MQGLLTRGFI KER------- ---------- ---------- ---------- ENSBTAP00000021610/1-1177 MQGLLTRGFI HQRDPALPVF EGDDLRRLAQ EITKARGFLW QAQSIRSQLQ BACU013838/1-529 ---------- ---------- ---------- ---------- ---------- bmy_12043T0/1-847 ARGNVTSGF- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000374049/1-1184 KKNDAEPKVT LS ENSTTRP00000009945/1-1128 ---------- -- ENSBTAP00000021610/1-1177 KKNNPEPKVT LI BACU013838/1-529 ---------- -- bmy_12043T0/1-847 -RGQARCRMT GR