KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:55 2014 Check: 00 .. Name: ENSP00000269391/1-679 Len: 779 Check: 1414 Weight: 1.00 Name: ENSBTAP00000021614/1-657 Len: 779 Check: 6088 Weight: 1.00 Name: ENSTTRP00000015085/1-681 Len: 779 Check: 7309 Weight: 1.00 Name: bmy_13785T0/1-675 Len: 779 Check: 864 Weight: 1.00 Name: BACU011536/1-690 Len: 779 Check: 3225 Weight: 1.00 // 1 50 ENSP00000269391/1-679 MGALTSRQHA GVEEVDIPSN SVYRYPPKSG SYFASHFIMG GEKFDSTHPE ENSBTAP00000021614/1-657 ---------- ---------- ---------G SYFASHFIMG GEKFDSTHPE ENSTTRP00000015085/1-681 MGALTSRQHA GVEEVDIPS- SVYRYPPKSG NYFASHFIMG GEKFDSTHPE bmy_13785T0/1-675 ---------- ---------- ---------- ---------- ---------- BACU011536/1-690 MGALTSRQHA GVEEVDIPSN SVYRYPPKSG SYFASHFIMG GEKFDSTHPE 51 100 ENSP00000269391/1-679 GYLFGENSDL NFLGNRPVV- ---------- ---------- ---------F ENSBTAP00000021614/1-657 GYLFGENSDL NFLGNRPVA- ---------- ---------- ---------F ENSTTRP00000015085/1-681 GYLFGENSDL NFLGNRPVA- ---------- ---------- ---------F bmy_13785T0/1-675 ---------- ---------- ---------- ---------- ---------F BACU011536/1-690 GYLFGENSDL NFLGNRPVAG PDFDVGDLPG EFSLLRAATP KHQVLSLREF 101 150 ENSP00000269391/1-679 PYAAPPPQEP VKTLRSLVNI RKDTLRLVKC AEEVKSPGEE ASKAKVHYNV ENSBTAP00000021614/1-657 PYAAPPPQEP VKTLRSLINI RKDTLRLVKC AEEVKTPGEE ADRAKVHYNV ENSTTRP00000015085/1-681 PYAAPPPQEP VKTLRSLINI RKDTLRLVKC AEEVKTPGEE AGRAKVHYNV bmy_13785T0/1-675 PYAAPPPQEP VKTLRSLINI RKDTLRLVKC AEEVKTPGEE AGRAKVQYNV BACU011536/1-690 PYAAPPPQEP VKTLRSLINI RKDTLRLVKC AEEVKTPGEE AGRAKVHYNV 151 200 ENSP00000269391/1-679 EFTFDTDARV AITIYYQATE EFQNGIASYI PKDNSLQSET VQYKRGVCQQ ENSBTAP00000021614/1-657 EFTFDTDARV AITIYYQATE EFQNGIASYI PRDNSLQSET VHYKRGVCQQ ENSTTRP00000015085/1-681 EFTFDTDARV AITIYYQATE EFQNGIASYI PKDNSLQSET VHYKRGVCQQ bmy_13785T0/1-675 EFTFDTDARV AITIYYQATE EFQNGIASYI PKDNSLQSET VHYKRGVCQQ BACU011536/1-690 EFTFDTDARV AITIYYQATE EFQNGIASYI PKDNSLQSET VHYKRGVCQQ 201 250 ENSP00000269391/1-679 FCLPSHTVDP SEWAEEELGF DLDREVYPLV VHAVVDEGDE YFGHCHVLLG ENSBTAP00000021614/1-657 FCLPSHTVDP SEWAEEELGF DLDREVYPLV VHAVVDEGDE YFGHCHVLLG ENSTTRP00000015085/1-681 FCLPSHTVDP SEWAEEELGF DLDREVYPLV VHAVVDEGDE YFGHCHVLLG bmy_13785T0/1-675 FCLPSHTVDP SEWAEEELGF DLDREVYPLV VHAVVDEGDE YFGHCHVLLG BACU011536/1-690 FCLPSHTVDP SEWAEEELGF DLDREVYPLV VHAVVDEGDE YFGHCHVLLG 251 300 ENSP00000269391/1-679 TFEKHTDGTF CVKPLKQKQV VDGVSYLLQE IYGIENKYNT QDSK------ ENSBTAP00000021614/1-657 TFEKHSDGTF CVKPLKQKQV VDGVSYLLQE IYGIENKYNT QESK------ ENSTTRP00000015085/1-681 TFEKHTDGTF CVKPLKQKQV VDGVSYLLQE IYGIENKYNT QECK------ bmy_13785T0/1-675 TFEKHTDGTF CVKPLKQKQV VDGVSYLLQE IYGIENKYNT QESKASSIHS BACU011536/1-690 TFEKHTDGTF CVKPLKQKQV ---------- ---------- ---------- 301 350 ENSP00000269391/1-679 ---------- ---------- ---------- -------VAE DEVSDNSAEC ENSBTAP00000021614/1-657 ---------- ---------- ---------- -------VAE DEVSDNSAEC ENSTTRP00000015085/1-681 ---------- ---------- ---------- -------VAE DEVSDNSAEC bmy_13785T0/1-675 SECTLPRRQT LQAGCLLKKV CDVRVFVTLA KFLSPGQVAE DEVSDNSAEC BACU011536/1-690 ---------- ---------- ---------- -------VAE DEVSDNSAEC 351 400 ENSP00000269391/1-679 VVCLSDVRDT LILPCRHLCL CNTCADTLRY QANNCPICRL PFRALLQIRA ENSBTAP00000021614/1-657 VVCLSDVRDT LILPCRHLCL CNTCADTLRY QANNCPICRL PFRALLQIRA ENSTTRP00000015085/1-681 VVCLSDVRDT LILPCRHLCL CNTCADTLRY QANNCPICRL PFRALLQIRA bmy_13785T0/1-675 VVCLSDVRDT LILPCRHLCL CNTCADTLRY QANNCPICRL PFRALLQIRA BACU011536/1-690 VVCLSDVRDT LILPCRHLCL CNTCADTLRY QANNCPICRL PFRALLQIRA 401 450 ENSP00000269391/1-679 MRKKLGPLSP TSFNPIISSQ TSDSEEHPSS ENIPPGYEVV SLLEALNGPL ENSBTAP00000021614/1-657 MRKKLGPLSP ASFNPILSSQ TSDSEEHSSS ENIPPGYEVV SLLEALNGPL ENSTTRP00000015085/1-681 MRKKLGPLSP TSFNPILSSQ TSDSEEHSSS ENIPPGYEVV SLLEALNGPL bmy_13785T0/1-675 MRKKLGPLSP TSFNPILSSQ TSDSEEHSSS ENIPPGYEVV SLLEALNGPL BACU011536/1-690 MRKKLGPLSP TSFNPILSSQ TSDSEEHSSS ENIPPGYEVV SLLEALNGPL 451 500 ENSP00000269391/1-679 TPSPAVPPLH VLGDGHLSGM LPSYGSDGHL PPVRTISPLD RLSDSSSQGL ENSBTAP00000021614/1-657 TPSPAVPPLH VLGDRHLSGM LPSYGSDGHL PPVRTFSPLD RLSDCGSQGL ENSTTRP00000015085/1-681 TASPAVPPLH VLGDRHLSGM LPSYGSDGHL PPVRTLSPLD RLSDCSSPGL bmy_13785T0/1-675 TPSPAVPPLH VLGDRHRSGM LPSYGSDGHL PPVRTLSPLD HLSDCSSPGL BACU011536/1-690 TPSPAVPPLH VLGDRRRSGM LPSYGSDGHL PPVRTLSPLD RLSDCSSPGL 501 550 ENSP00000269391/1-679 KLKKSLSKST SQNSSVLHEE EDEHSCSESE TQLSQRPSVQ HLGEECGVTP ENSBTAP00000021614/1-657 KLKKSLSKSI SQNSSVLPEE DDERSCSESE TQLSQRPSGQ HLREECGVTP ENSTTRP00000015085/1-681 KLRNSLSKSI SQNSSVLHEE EDERSCSESE TPLSQRPSAQ HLREECGITP bmy_13785T0/1-675 KLRNSLSKSI SQNSSVLHEE EDERSCSESE THLSRRPSAQ HLREECGITP BACU011536/1-690 KLRNSLSKSI SQNSSVLHEE EDERSCSESE THLSQRPSAQ HLREECGITP 551 600 ENSP00000269391/1-679 ESENLTLSSS GAIDQSSCTG TPLSSTISSP E--------- -------GPA ENSBTAP00000021614/1-657 ESENLTLSSS GAIDQSSCTG TPLSSTISSP E--------- -------DPA ENSTTRP00000015085/1-681 VSENLTLSSS GAIDQSSCTG TPLSSTISSP E--------- -------DPA bmy_13785T0/1-675 ESENLTLSSS GAIDQSSCTG TPLSSTISSP EAAGPDLRVL PPTPVSKDPA BACU011536/1-690 ESENLTLSSS GAIDQSSCTG TPLSSTISSP E--------- -------DPA 601 650 ENSP00000269391/1-679 SSSLAQSVMS MAS-----SQ ISTDTVSSMS GSYIAPGTEE EGEALSSPQP ENSBTAP00000021614/1-657 SSSLAQSVMS MVSSQSQHSQ ISTDTVSSMS GSYIAPGTEE EGEALPSPRA ENSTTRP00000015085/1-681 SSSLAQSVMS MVS-----SQ ISTDTVSSMS GSYIAPGTEE DGEALPCPRA bmy_13785T0/1-675 SSSLAQSVMS MVS-----SQ ISTDTVSSMS GSYIAPGTEE EGEALPCPRA BACU011536/1-690 SSSLAQSVMS MVS-----SQ ISTDTVSSMS GSYIAPGTEE EGEALPCPRA 651 700 ENSP00000269391/1-679 ASRAPSEEGE GLPAESPDSN FAGL----PA GEQDAEGNDV IEEEDGSPTQ ENSBTAP00000021614/1-657 ASRTPSDEEE VTPAASPDCN FMGL----AA EEQDAEGNDV LEEEDASPTR ENSTTRP00000015085/1-681 SSRTPSEEGE VTPAASPDCN FAGL--AAAA EEQDAEGNDV LEEEDGSPTQ bmy_13785T0/1-675 TSRTPSEEEE VTPAASPDCN FAGLAAAAAA EEQDAEGNDV LEEEDGSPTQ BACU011536/1-690 ASRTPSEEEE VTPAASPDCN FAGL-AAAAA EEQDAEGNDV LEEEDGSPTQ 701 750 ENSP00000269391/1-679 E-GQRTCAFL GMECDNNNDF DIASVKALDN KLCSEVCLPG AWQADDNAVS ENSBTAP00000021614/1-657 EDGQRTCAFL GMECDNNNDF DIASVKALDN KLCSEVCLPG AWQADDNVVS ENSTTRP00000015085/1-681 E-GQRTFAFL GMECDNNNDF DIASVKALDN KLCSEVCLPG AWQADDNVVS bmy_13785T0/1-675 EDGQRTFAFL GMACDNNNAF DIASVKALDN KLCSEVCLPG AWQADDNVVS BACU011536/1-690 EDGQRTFAFL GMACDNNNDF DIASVKALDN KLCSEVCLPG AWQADDNVVS 751 800 ENSP00000269391/1-679 -RNAQRRRLS SSSLEDSETR PCVWGPLAV ENSBTAP00000021614/1-657 RRNTQRRRLS SESLEDPEDR PCVWGPLAV ENSTTRP00000015085/1-681 RRNTQRRRLS SASLEDPENR LCVWGPLAI bmy_13785T0/1-675 RRNTQRRRLS SGSLEDPENR LCVWGPLAI BACU011536/1-690 RRNTQRRRLS SGSLEDPENR LCVWGPLAI