KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:58 2014 Check: 00 .. Name: ENSTTRP00000012876/1-865 Len: 1581 Check: 1066 Weight: 1.00 Name: bmy_12677T0/1-1326 Len: 1581 Check: 9989 Weight: 1.00 Name: BACU002851/1-992 Len: 1581 Check: 9040 Weight: 1.00 Name: ENSP00000317997/1-1551 Len: 1581 Check: 7325 Weight: 1.00 Name: ENSBTAP00000021618/1-1553 Len: 1581 Check: 6513 Weight: 1.00 // 1 50 ENSTTRP00000012876/1-865 MGFRLAL--- ----AWTLLI GPWVPMGAQN PISWEVQRFD GWYNNLMEHR bmy_12677T0/1-1326 MAHTLALRAA QRERAKPLSI FP-LPRGAQN PISWEVQRFD GWYNNLMEHR BACU002851/1-992 MAHTLALRVA QRERAKPLSI FP-LPRGAQN PISWEVQRFD GWYNNLMEHR ENSP00000317997/1-1551 MGFCLAL--- ----AWTLLV GAWTPLGAQN PISWEVQRFD GWYNNLMEHR ENSBTAP00000021618/1-1553 MSFHFAL--- ----VWTLLV GPWMPMGSQN SISWEVQRFD GWYNNLMEHR 51 100 ENSTTRP00000012876/1-865 WGSKGSRLQR LIPASYAVGV YQPFREPHLP NPRALSNTAM RGPAGQASLR bmy_12677T0/1-1326 WGSKGSWLQR LVPASYADGV YQPFREPHLP NPRALSNTAM RGPAGQASLR BACU002851/1-992 WGSKGSRLQR LVPASYADGV YQPFREPHLP NPRALSNTAM RGPAGQASLR ENSP00000317997/1-1551 WGSKGSRLQR LVPASYADGV YQPLGEPHLP NPRDLSNTIS RGPAGLASLR ENSBTAP00000021618/1-1553 WGSKGSRLQR LVPASYADGV YQPLGEPHLP NPRALSNTAM RGPAGLASLQ 101 150 ENSTTRP00000012876/1-865 NRTVLGVFFR YHVLSDLVSV EKPGCPAEFL NIHIPPGDPV FDRDQSGDVV bmy_12677T0/1-1326 NRTVLA---V FF-------- ------RESL NL-------- WGREASG--- BACU002851/1-992 NHTVLG---G YHVLSDLVSV EKPGCPAEFL NIHIPPGDPV FDRDQSGEVV ENSP00000317997/1-1551 NRTVLGVFFG YHVLSDLVSV ETPGCPAEFL NIRIPPGDPM FDPDQRGDVV ENSBTAP00000021618/1-1553 NRTVLGVFFG YHVLSDLVSV EKSGCPAEFL NIHIPPGDPV FDRDHSGDVV 151 200 ENSTTRP00000012876/1-865 LPFQRSRWDP ETGQSPSNPR DLXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12677T0/1-1326 ---------- ---------- ---------- ---------- ---------- BACU002851/1-992 LSFQRSRWDP ETGQSPSNPR DL-------- ---------- ---------- ENSP00000317997/1-1551 LPFQRSRWDP ETGRSPSNPR DPANQVTGWL DGSAIYGSSH SWSDALRSFS ENSBTAP00000021618/1-1553 LPFQRSRWDP ETGQSPSNPR DLTNEVTGWL DGSAIYGSSH SWSDELRSFS 201 250 ENSTTRP00000012876/1-865 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12677T0/1-1326 ---------- ---------- ---------- ---------- ---------- BACU002851/1-992 ---------- ---------- ---------- ---------- ---------- ENSP00000317997/1-1551 RGQLASGPDP AFPRDSQNPL LMWAAPDPAT GQNGPRGLYA FGAERGNREP ENSBTAP00000021618/1-1553 GGQLASGPDP AFPRAAQAPL LMWMPPDPTT GRRGPRGLYA FGAERGNREP 251 300 ENSTTRP00000012876/1-865 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXHARKRV IATYQNIAMY bmy_12677T0/1-1326 ---------- ---------- ---------- ---------- -----NIAMY BACU002851/1-992 ---------- ---------- ---------- ---------- -----NIAMY ENSP00000317997/1-1551 FLQALGLLWF RYHNLWAQRL ARQHPDWEDE ELFQHARKRV IATYQNIAVY ENSBTAP00000021618/1-1553 FLQALGLLWF RYHNLWAQKL ARRYPLWGDE ELFQHARKRV IATYQNIAMY 301 350 ENSTTRP00000012876/1-865 EWLPSFLQQA PPNYTEYRPF LDPSISPEFL AASEQFFSTM VPPGVYMRNA bmy_12677T0/1-1326 EWLPSFLQQA PPNYTEYRPF LDPSISPEFL AASEQFFSTM VPPGVYMRGS BACU002851/1-992 EWLPSFLQQA PPNYTEYRPF LDPSISPEFL AASEQLFSTM VPPGVYM--- ENSP00000317997/1-1551 EWLPSFLQKT LPEYTGYRPF LDPSISSEFV AASEQFLSTM VPPGVYMRNA ENSBTAP00000021618/1-1553 EWLPSFLRKM PPEYAGYRPF LDPSISPEFL AASEQFFSTM VPPGVYMRNA 351 400 ENSTTRP00000012876/1-865 SCHFQ----- ---------G VINRNSSVSR ALRVCNSYWS -EHANLQRAE bmy_12677T0/1-1326 SIGTQVSPEL SGSAIATGAE STQTYKELKM WTRCC---WA WPPRSL---- BACU002851/1-992 ---------- ---------- STQTYKELKM WTRCC---WA WPPRSL---- ENSP00000317997/1-1551 SCHFQ----- ---------G VINRNSSVSR ALRVCNSYWS REHPSLQSAE ENSBTAP00000021618/1-1553 SCHFQ----- ---------G VINRNSSVSR ALRVCNSYWS REHPNLQRAE 401 450 ENSTTRP00000012876/1-865 DVDP-LLGMA SQIAEED-HV VVEDA-DFLP GPLKFFRTDH LASCLQPGRD bmy_12677T0/1-1326 ---------- ---SERT--- ------MWWL RTYEFSRTDH LASCLQRGWD BACU002851/1-992 ---------- ---SERT--- ------MWWL RTYE------ ---------- ENSP00000317997/1-1551 DVDALLLGMA SQIAEREDHV LVEDVRDFWP GPLKFSRTDH LASCLQRGRD ENSBTAP00000021618/1-1553 DVDALLLGMA SQIAEREDHV VVEDVRDFWP GPLKFSRTDH LASCLLRGRD 451 500 ENSTTRP00000012876/1-865 LGLPSYTKAR ATLGLPPVTR WQDVNPALFR SD-------- ---------- bmy_12677T0/1-1326 VGLPAYTKAR ATLGLPPVTR WQDVNPALFR SDGTVLEATA ALYNQDLSRL BACU002851/1-992 ---------- ---------- ---------- ----VLEATA ALYNQDLSQL ENSP00000317997/1-1551 LGLPSYTKAR AALGLSPITR WQDINPALSR SNDTVLEATA ALYNQDLSWL ENSBTAP00000021618/1-1553 LGLPSYTKAR ATLGLPPVTR WQDINPALSR SDGTVLEATA ALYNQDLSRL 501 550 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 ELLPGGLLES HGDPGPLFST IVVDQFVRLR DGD-RYWFEN SRNGLFSEKE BACU002851/1-992 ELLPGGLLES HGDPGPLFSA IVLDQFVRLR DGDXXXXXXX XXNGLFSEKE ENSP00000317997/1-1551 ELLPGGLLES HRDPGPLFST IVLEQFVRLR DGD-RYWFEN TRNGLFSKKE ENSBTAP00000021618/1-1553 ELLPGGLLES HGDPGPLFST IILDQFVRLR DGD-RYWFEN SKNGLFSERE 551 600 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 IAEIRNTSLQ DVLVAVTNVN PGALQPNVFF WHAGDPCPQP RQLSTEGLPA BACU002851/1-992 IAEIRNTSLQ DVLVAVTNVN PGALQPNVFF WHA------- ---------- ENSP00000317997/1-1551 IEEIRNTTLQ DVLVAVINID PSALQPNVFV WHKGDPCPQP RQLSTEGLPA ENSBTAP00000021618/1-1553 IAEIRNTSLR DVLVAVTKVD SGALQPSVFF WHAGDPCPQP GQLSTKGLPA 601 650 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 CAPPVMRDYF EGSGFGFGVT IGILCCFPLV SLLSAWIVAQ LWRRYLKRLQ BACU002851/1-992 ---------- ---------- ---------V SLLSAWIVAQ LWRRYLKRLQ ENSP00000317997/1-1551 CAPSVVRDYF EGSGFGFGVT IGTLCCFPLV SLLSAWIVAR LRMRNFKRLQ ENSBTAP00000021618/1-1553 CAPPIMRDYF EGSGFGFGVT IGTLCCFPLV SLLSAWIVAQ LRRRNLKRLQ 651 700 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 GQNRQSIMSE KLVGSMKASE WQGRKEPCRP VLVHLQPGQI HVVDGRLSVL BACU002851/1-992 GQSRQSSMSE KLVGSMKASE WQGRKEPCRP VLVHLQPGQI HVVDGRLSVL ENSP00000317997/1-1551 GQDRQSIVSE KLVGGMEALE WQGHKEPCRP VLVYLQPGQI RVVDGRLTVL ENSBTAP00000021618/1-1553 GQDRQSIMCE KLMGGIKAME WQGRKEPCRP VLVHLQPGQI HMVDGRLSVL 701 750 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 RTVQLRPPQQ VHLILSSNRG RRALLLRIRK EYDLVLLFDL GEERQLMLEN BACU002851/1-992 RTVQLRPPQQ VHLILSSNRG DA-------- ---------- ---------- ENSP00000317997/1-1551 RTIQLQPPQK VNFVLSSNRG RRTLLLKIPK EYDLVLLFNL EEERQALVEN ENSBTAP00000021618/1-1553 RTVQLRPPQQ VNLILSSNHG RRALLLKIPK EYDLVLLFDL EEERQVMVES 751 800 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 LRGALKESGL SFQQWEPREQ ELMRAAMTRE QQSHLLETFF RHLFSQVLDI BACU002851/1-992 ---------- ---------- ---------- ---------- ---------- ENSP00000317997/1-1551 LRGALKESGL SIQEWELREQ ELMRAAVTRE QRRHLLETFF RHLFSQVLDI ENSBTAP00000021618/1-1553 LRGALKESGL NFQEWELREQ ELMRAAVTRE QRSHLLETFF RHLFSQVLDI 801 850 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 DQADTGTLPL DSSQKVQEAL TWELSRAEFA ESLGLKPQDM FVESTFSLAD BACU002851/1-992 ---------- ---------- ---------- ---------- ---------- ENSP00000317997/1-1551 NQADAGTLPL DSSQKVREAL TCELSRAEFA ESLGLKPQDM FVESMFSLAD ENSBTAP00000021618/1-1553 DQADAGALPL DSSQKVQEAL TCELSRAEFA ESLGLKPQDM FVQSMFSLAD 851 900 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 KDGSGYLSFQ EFLDILVVFM KGSPEEKSRL TFHMYDSDGN GLISKDEFIR BACU002851/1-992 ---------- ------VPYC SGSTRSMTWL T--------- ---------- ENSP00000317997/1-1551 KDGNGYLSFR EFLDILVVFM KGSPEEKSRL MFRMYDFDGN GLISKDEFIR ENSBTAP00000021618/1-1553 KDGNGYLSFR EFLDILVVFM KGSPEEKSRL MFRMYDFDGN GLISKDEFIR 901 950 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 MLRSFIEISN NCLSKAQPAE AVESMFRESG FQDKQELT-- ----CLKSSR BACU002851/1-992 ---------- ---------- ---------- ---------- ---------- ENSP00000317997/1-1551 MLRSFIEISN NCLSKAQLAE VVESMFRESG FQDKEELTWE DFHFMLRDHN ENSBTAP00000021618/1-1553 MLRSFIEISN NCLTKTQLAE VVESMFRESG FQDKQELTWE DFHFMLRDHD 951 1000 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 TSASEPQTSA RGSSECSLSP KGRRRQGGAD NMENVVP--- ---HGHR--- BACU002851/1-992 ---------- ---------- ---------- ---------- ---------- ENSP00000317997/1-1551 SELRFTQLCV KG-VEVPEVI KDLCRRASYI SQDMICPSPR VSARCSR--S ENSBTAP00000021618/1-1553 SELRFTQLCV KG-VEVPEVI KDLCRRASYI SQEKLCPSPR VSAHRPRKDA 1001 1050 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 -----PSPGK SGSTLASGPW PRESRDFLSP RVTSFQPLLF TEAHQEKFQR BACU002851/1-992 ---------- ---------- ---------- ---------- -----EKFQR ENSP00000317997/1-1551 DIETELTPQR LQCPMDTDP- PQEIRRRFGK KVTSFQPLLF TEAHREKFQR ENSBTAP00000021618/1-1553 DIEVELTPRR LQYPNDTDP- PQEIRRRFGK KVTSYQPLLF TEAHREKFQR 1051 1100 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 NRDHQTVQQF KRFVENYQRH IGCLAVFYTI AGVLFLERAY YYAFAAHHVG BACU002851/1-992 NRGHQTVQQF KRFVENYRCH IGCPAVFYTI AGVLFLERAY YYAFAAHHVG ENSP00000317997/1-1551 SCLHQTVQQF KRFIENYRRH IGCVAVFYAI AGGLFLERAY YYAFAAHHTG ENSBTAP00000021618/1-1553 SRRHQTVQQF KRFVENYRRH IGCLAVFYAI AGGLFLERAY HYAFAAHHKG 1101 1150 ENSTTRP00000012876/1-865 ---------- ---------- ---------- ---------- ---------- bmy_12677T0/1-1326 ITDTTLVGII LSRGTAASIS FMFSYILFTM CRNLVTLLRE TFLNRYVPFD BACU002851/1-992 ITDTTLVGII LSRGTAASVS FMFSYILLTM YGNLVTFLRE TFLNRYVPFD ENSP00000317997/1-1551 ITDTTRVGII LSRGTAASIS FMFSYILLTM CRNLITFLRE TFLNRYVPFD ENSBTAP00000021618/1-1553 ITDTTRVGII LSRGTAASIS FMFSYILLTM CRNLITFLRE TFLNRYVPFD 1151 1200 ENSTTRP00000012876/1-865 ---------- ---------- GTLHSAGRVV NVYLFSISPL -ILSCLLPGL bmy_12677T0/1-1326 AAVDF----H CLIASTPRWP PH-------- -------CPL SILSCLFPGL BACU002851/1-992 AAVDFIASLP PLPSSSQAGP GILHSAGHVV NVYLFSISPL SILSCLFPGL ENSP00000317997/1-1551 AAVDF----H RLIASTAIVL TVLHSVGHVV NVYLFSISPL SVLSCLFPGL ENSBTAP00000021618/1-1553 AAVDF----H RLIASTAIVL TVLHSAGHVV NVYLFSISPL SVLSCLFPGL 1201 1250 ENSTTRP00000012876/1-865 FHDNGSEFPQ KCYWWFFQTM PGLTGVMLLL VLAVMYVFAS HHFQRRSFRG bmy_12677T0/1-1326 FHDNGSEFPQ KCYWWFFQTV PGLTGVMLLL VLAIMYVFTS HHFRRRSFRG BACU002851/1-992 FHDNGSEFPQ KCYWWFFQTV PGLTGVMLFL VLAIMYIFAS HHFRRRSFRG ENSP00000317997/1-1551 FHDDGSELPQ KYYWWFFQTV PGLTGVVLLL ILAIMYVFAS HHFRRRSFRG ENSBTAP00000021618/1-1553 FHDNGSEFPQ KYYWWFFQTV PGLTGVMLLL ILAIMYIFAS RHFRRCSFRG 1251 1300 ENSTTRP00000012876/1-865 FWLTHHLYIL LYVLXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12677T0/1-1326 FWLTHHLYIL LYVLLIIHGS FALIHLPCFH ISFLVPVLIY MGDKLVSLSR BACU002851/1-992 FWLTHHLYIL LYVLLIIHGS FALIQLPRFH I-FLVPVLIY MGDKLVSLIR ENSP00000317997/1-1551 FWLTHHLYIL LYVLLIIHGS FALIQLPRFH IFFLVPAIIY GGDKLVSLSR ENSBTAP00000021618/1-1553 FWLTHHLYIL LYVLLIIHGS FALIQLPRFH IFFLVPALIY VGDKLVSLSR 1301 1350 ENSTTRP00000012876/1-865 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12677T0/1-1326 KKVEISVVKA ELLPSGVTHL EFQRPQGFEY KSGQWVQIAC LALGTNECHP BACU002851/1-992 KKVEISVVKA ELLPLGVTHL EFQRPQGFEY KSGQWVRIAC LALGINECHP ENSP00000317997/1-1551 KKVEISVVKA ELLPSGVTHL RFQRPQGFEY KSGQWVRIAC LALGTTEYHP ENSBTAP00000021618/1-1553 KKVEISVVKA ELLPSGVTHL EFQRPQGFEY KSGQWVRIAC LALGTTEYHP 1351 1400 ENSTTRP00000012876/1-865 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12677T0/1-1326 FTLTSAPHED TLSLHIRAAG PWTTCLREIY SPPTGDSCAK HPKLYLDGPF BACU002851/1-992 FTLTSAPHED TLSLHIWAAG PWTTRLREIY SPPTGDSCAK HPKLYLDGPF ENSP00000317997/1-1551 FTLTSAPHED TLSLHIRAAG PWTTRLREIY SAPTGDRCAR YPKLYLDGPF ENSBTAP00000021618/1-1553 FTLTSAPHEE TLSLHIRAAG PWTTRLREIY SPPTDDSCAK YPKLYLDGPF 1401 1450 ENSTTRP00000012876/1-865 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXIYFI bmy_12677T0/1-1326 GEGHQEWHKF EVSVLVGGGI GVTPFASILK DLVFSQLPS- ---------- BACU002851/1-992 GEGHQEWHKF EVSVLVGGGI GVTPFASILK DLVFMSSVSC QVFCRK---- ENSP00000317997/1-1551 GEGHQEWHKF EVSVLVGGGI GVTPFASILK DLVFKSSVSC QVFCKKIYFI ENSBTAP00000021618/1-1553 GEGHQEWHKF EVSVLVGGGI GVTPFASILK DLVFKSSVSC QVFCKKIYFI 1451 1500 ENSTTRP00000012876/1-865 WVTRTQRQFE WLADIIWGVE ENDHQDLVSV HIYITQLAEK FDLRTTMLYI bmy_12677T0/1-1326 -VTRTQRQFE WLADIIREVE ENDHQDLVSV HIYITQLAEK FDLRTTMLYI BACU002851/1-992 -VTRTQRQFE WLADIIREVE ENDHQDLVSV HIYITQLAEK FDLRTTMLYI ENSP00000317997/1-1551 WVTRTQRQFE WLADIIREVE ENDHQDLVSV HIYITQLAEK FDLRTTMLYI ENSBTAP00000021618/1-1553 WVTRTQRQFE WLADIIREVE ENDRQDLVSV HIYITQLAEK FDLRTTMLYI 1501 1550 ENSTTRP00000012876/1-865 CERHFQKVLN RSLLTGLRSI THF--PPFEP FFDSLQEVHP KVQKIGVFSC bmy_12677T0/1-1326 CERHFQKVLN RSLFTGLRSI THFGQPPFEP FFNSLQKVHP QVQKIGVFSC BACU002851/1-992 CERHFQKVLT RSLFTGLCSI SDLGRPPFEP FFNSLQEVHP QVQKIGVFSC ENSP00000317997/1-1551 CERHFQKVLN RSLFTGLRSI THFGRPPFEP FFNSLQEVHP QVRKIGVFSC ENSBTAP00000021618/1-1553 CERHFQKVLN RSLFTGLRSV THFGRPPFEA FFNSLQKVHP QVRKIGVFSC 1551 1600 ENSTTRP00000012876/1-865 DPHGMTKNVE KACQLINRQD GIHFSYHHEN F bmy_12677T0/1-1326 DPPGMTKNVE KACQLINRQE GIHFSHHHEN F BACU002851/1-992 DPPGMTKNVE KACQLINRQE GIHFSHHHEN F ENSP00000317997/1-1551 GPPGMTKNVE KACQLINRQD RTHFSHHYEN F ENSBTAP00000021618/1-1553 GPPGMTKNVE KACQLINRQD RTHFSHHYEN F