KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:00 2014 Check: 00 .. Name: ENSTTRP00000008274/1-523 Len: 561 Check: 1545 Weight: 1.00 Name: ENSP00000433623/1-522 Len: 561 Check: 1237 Weight: 1.00 Name: ENSBTAP00000021630/1-542 Len: 561 Check: 1219 Weight: 1.00 Name: bmy_12113T0/1-439 Len: 561 Check: 9283 Weight: 1.00 Name: BACU008910/1-489 Len: 561 Check: 8296 Weight: 1.00 // 1 50 ENSTTRP00000008274/1-523 ---------- ---------M SLLHWENSCG SSQSESDCCA AMAASSCGAA ENSP00000433623/1-522 ---------- ---------M SLLNCENSCG SSQSESDCCV AM-ASSCSAV ENSBTAP00000021630/1-542 ---------- ---------M SLLHCENSCG SSQSESDCCA AMAASSCGTA bmy_12113T0/1-439 MLLKIFLRRR KRAVDNHVTM SLLHCENSCG SSQSESGCCA AMAASSCGAA BACU008910/1-489 ---------- ---------M SLLHCENSCG SSQSESDCCA AMAASSCGAA 51 100 ENSTTRP00000008274/1-523 AKDDSVSGTA SAVNLSSSFM EEIQGYDVEF DPPLESKYEC PICLMALREA ENSP00000433623/1-522 TKDDSVGGTA STGNLSSSFM EEIQGYDVEF DPPLESKYEC PICLMALREA ENSBTAP00000021630/1-542 AKDDSVSGTA STVTLSSSFM EEIQGYDVEF DPPLESKYEC PICLMALREA bmy_12113T0/1-439 AKDDSVSGTA STGNLSSSFM EEIQGYDVEF DPPLESKYEC PICLMALREA BACU008910/1-489 AKDDSVSGTA STGNLSSSFM EEIQGYDVEF DPPLESKYEC PICLMALREA 101 150 ENSTTRP00000008274/1-523 VQTPCGHRFC KACIIKSIRD AGHKCPVDNE ILLENQLFPD NFAKREILSL ENSP00000433623/1-522 VQTPCGHRFC KACIIKSIRD AGHKCPVDNE ILLENQLFPD NFAKREILSL ENSBTAP00000021630/1-542 VQTPCGHRFC KACIIKSIRD AGHKCPVDNE ILLENQLFPD NFAKREILSL bmy_12113T0/1-439 VQTPCGHRFC KACIIKSIR- ---------- ---------- ---------- BACU008910/1-489 VQTPCGHRFC KACIIKSIRD AGHKCPVDNE ILLENQLFPD NFAKREILSL 151 200 ENSTTRP00000008274/1-523 MVKCPNEGCL HKMELRHLED HRAHCEFALM NCPQCQRPFQ KCQLNIHIVK ENSP00000433623/1-522 MVKCPNEGCL HKMELRHLED HQAHCEFALM DCPQCQRPFQ KFHINIHILK ENSBTAP00000021630/1-542 MVKCPNEGCL HKMELRHLEE HQAHCEFALM SCPQCQRPFQ KCHLNIHILK bmy_12113T0/1-439 ---------- ---------- ---------- ---------- ---------- BACU008910/1-489 MVKCPNEGCL HKMELRHL-- ---------- ---------- ---------- 201 250 ENSTTRP00000008274/1-523 ECPRRQVSCV NCAVSMAFED KEIHDQNCPL ANVICEYCNT MLIREQMPNH ENSP00000433623/1-522 DCPRRQVSCD NCAASMAFED KEIHDQNCPL ANVICEYCNT ILIREQMPNH ENSBTAP00000021630/1-542 ECPRRQVPCE NCAVSMAFED KEIHEQNCPL ANVICEYCNT MLIREQMPNH bmy_12113T0/1-439 ---------- ---------- ---------- ---------- -IIKHIMPNH BACU008910/1-489 ---------- ---------- -EIHDQNCPL ANVICEYCNT MLIREQMPNH 251 300 ENSTTRP00000008274/1-523 YDLDCPTAPV PCTFSTFGCH EKXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000433623/1-522 YDLDCPTAPI PCTFSTFGCH EKMQRNHLAR HLQENTQSHM RMLAQAVHSL ENSBTAP00000021630/1-542 YDLDCPTAPV PCTFSAFGCH EKMQRNHLAR HLQENTQSHM RMMAQAVQTL bmy_12113T0/1-439 YDLDCPTAPV PCTFSTFGCH EKMQRNHLAR HLQEDTQSHM RMMAQAVQTL BACU008910/1-489 YDLDCPTAPV PCTFSTFGCH EKMQRNHLAR HLQEDTQSHM RMMAQAVQTL 301 350 ENSTTRP00000008274/1-523 XXX------- ---------- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000433623/1-522 SVI------- ---------- --PDSGYISE VRNFQETIHQ LEGRLVRQDH ENSBTAP00000021630/1-542 SLAVAPVPQC TMPLYDSVPP TRPSSGRHSE VHNFQETIQQ LEGRLVRQDH bmy_12113T0/1-439 SLAIAPAPQR GMLPCDSTSL PRVSSGCHSE VQNFQETIQQ LEGRLVRQDH BACU008910/1-489 SLAIAPAPQR GMLPCDSTSL PRVSSGCHSE VQNFQETIQQ LEGRLVRQDH 351 400 ENSTTRP00000008274/1-523 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000433623/1-522 QIRELTAKME TQSMYVSELK RTIRTLEDKV AEIEAQQCNG IYIWKIGNFG ENSBTAP00000021630/1-542 QIRELTAKME TQSMYVNELK RTIRTLEDKV AEIEAQQCNG IYIWKIGNFG bmy_12113T0/1-439 QIRELTAKME TQSTYVSELK RTIRTLEDKV AEIEAQQCNG IYIWKIGNFG BACU008910/1-489 QIRELTAKME TQSTYVSELK RTIRTLEDKV AEIEAQQCNG IYIWKIGNFG 401 450 ENSTTRP00000008274/1-523 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAQ RCANYISLFV ENSP00000433623/1-522 MHLKCQEEEK PVVIHSPGFY TGKPGYKLCM RLHLQLPTAQ RCANYISLFV ENSBTAP00000021630/1-542 MHLKSQEEEK PVVIHSPGFY TGKPGYKLCM RLHLQLPSAQ RCANYISLFV bmy_12113T0/1-439 MHLKSQEEEK PVVIHSPGFY TGKPGYKLCM RLHLQLPTAQ RCANYISLFV BACU008910/1-489 MHLKSQEEEK PVVIHSPGFY TGKPGYKLCM RLHLQLPTAQ RCANYISLFV 451 500 ENSTTRP00000008274/1-523 HTMQGEYDSH LPWPFQGTIR LTILDQSEAP VRQNHEEIMD AKPELLAFQR ENSP00000433623/1-522 HTMQGEYDSH LPWPFQGTIR LTILDQSEAP VRQNHEEIMD AKPELLAFQR ENSBTAP00000021630/1-542 HTMQGEYDSH LPWPFQGTIR LTILDQSEAA VRQNHEEIMD AKPELLAFQR bmy_12113T0/1-439 HTMQGEYDSH LPWPFQGTIR LTILDQSEAP VRQNHEEIMD AKPELLAFQR BACU008910/1-489 HTMQGEYDSH LPWPFQGTIR LTILDQSEAP VRQNHEEIMD AKPELLAFQR 501 550 ENSTTRP00000008274/1-523 PTIPRNPKGF GYVTFMHLEA LRQRTFIKDD TLLVRCEVST RFDMGSLRRE ENSP00000433623/1-522 PTIPRNPKGF GYVTFMHLEA LRQRTFIKDD TLLVRCEVST RFDMGSLRRE ENSBTAP00000021630/1-542 PTIPRNPKGF GYVTFMHLEA LRQRTFIKDD TLLVRCEVST RFDMGSLRRE bmy_12113T0/1-439 PTIPRNPKGF GYVTFMHLEA LRQRTFIKDD TLLVRCEVST RFDMGSLRRE BACU008910/1-489 PTIPRNPKGF GYVTFMHLEA LRQRTFIKDD TLLVRCEVST RFDMGSLRRE 551 600 ENSTTRP00000008274/1-523 GFQPRSTDLG I ENSP00000433623/1-522 GFQPRSTDAG V ENSBTAP00000021630/1-542 GFQPRSTDSG I bmy_12113T0/1-439 GFQPRSTDLG I BACU008910/1-489 GFQPRSTDLG I