KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:06 2014 Check: 00 .. Name: ENSP00000406934/1-828 Len: 875 Check: 2357 Weight: 1.00 Name: ENSBTAP00000021674/1-849 Len: 875 Check: 3851 Weight: 1.00 Name: ENSTTRP00000011998/1-824 Len: 875 Check: 5890 Weight: 1.00 Name: bmy_13210T0/1-847 Len: 875 Check: 8485 Weight: 1.00 Name: BACU012991/1-769 Len: 875 Check: 3314 Weight: 1.00 // 1 50 ENSP00000406934/1-828 ---------- ---------- ---------- ---------M QNSVSVPPKD ENSBTAP00000021674/1-849 MTAVIQVNDI IMQSSFSVPP KDQGDVSLLP SPVEKLLTQK MLESPGKTTC ENSTTRP00000011998/1-824 ---------- ---------- ---------- ---------M QSASSVPPKD bmy_13210T0/1-847 ---------- --MLKPCLSV HPTKEKVFFT NCHPRYLTQK KSESPGKTAC BACU012991/1-769 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000406934/1-828 EGESNIPSGT IQSRKGLQNK SQFRTIAPKI VPKVLTSRML PCHSPSRSDQ ENSBTAP00000021674/1-849 TGEPNIPPGA IHSGKGLQNK SQFRTIAPKI APQVLAPRVL PGPVPSLSDQ ENSTTRP00000011998/1-824 QGESNSPPGT IQGGKGLQGK SQFRTIAPKL APRVLAPRVV PGPAPSLSDH bmy_13210T0/1-847 TGESNSPPGT IQGGKGLQGK SQFRTIAPKL APQVLAPRVL PGPAPSLSDH BACU012991/1-769 ---------- ---------- ---------- --------ML PGPAPSLSDH 101 150 ENSP00000406934/1-828 VNLGPSINSK LLGMSTQNYA LMQVAGQEGT FSLVALPHVA SAQPIQKPRM ENSBTAP00000021674/1-849 ANPGPSLGSK PLGMPPQNYA LMQVAGQEGT FSLIALPHVA SAQPIQKPRM ENSTTRP00000011998/1-824 AHPGPSLGSK ALGMPPQNYA LMQVAGQEGT FSLVALPHVA SAQPLQKPRL bmy_13210T0/1-847 AHPGPSLSSK ALGMPPQNYA LMQVAGQEGT FSLVALPHVA SAQPLQKPRL BACU012991/1-769 AHPGPSLSSK ALGMPPQNYA LMQVAGQEGT FSLVALPHVA SAQPLQKPRL 151 200 ENSP00000406934/1-828 SLPENLKLPI PRYQPPRNSK ASRKKPILIF PKSGCSKAPA QTQMCPQMSP ENSBTAP00000021674/1-849 PLPENLKLPI PRYQPPRPGK GVRKKPEL-- -ERGCSKS-A QT----QAAP ENSTTRP00000011998/1-824 PLPKNLKLPI PRYQRPGHSK GARKKPECSS SDRGCSQAPA QT----QAAP bmy_13210T0/1-847 PLPKNLKLPI PRYQRPGHSK GARKKPGFSS SDRGCSQAPA QT----QAAP BACU012991/1-769 PLPKNLKVPI PRYQRPGHSK GARKKPGFSS SDRGCSQAPA QT----QAAP 201 250 ENSP00000406934/1-828 SPPHHPELLY KPSPFEEVPS LEQAPASIST AALTNGSDHG DLRPPVTNTH ENSBTAP00000021674/1-849 PPPEHPEPPH KPNPPK--VA PDQAPAA--- --LTNRSGHQ DPGPPGTSNH ENSTTRP00000011998/1-824 PLPEHPEAPH KPSPPKPALA PGQAPAS--- --LTSGGGRG DPGSPGTSDH bmy_13210T0/1-847 PLPEHPEAPH KPSQPKPALA PSQAPAS--- --LTNGGGHG DPGPPGTSDH BACU012991/1-769 ALPEHPEAPH KPSPPKPALA PGQAQAS--- --LTNGGGHG DPGPPGTSDH 251 300 ENSP00000406934/1-828 GSLNPPATPA SSTPEEP-AK QDLTALSGKA HFVSKITSSK PSAVASEKFK ENSBTAP00000021674/1-849 GGWTPPATPA LATPEEPSAE QGLQKSSGRA KVPSKKTPRK PSAVASEKPQ ENSTTRP00000011998/1-824 GGRDPPAAPA LSTLEEPSAE RGLPKSSGRA GVAGKKPSRK P-AVARGELR bmy_13210T0/1-847 GGRDPPAAPA LSTPEEPSAE RGLPKSSGRA GVAGKKPSRK P-TVSRGELR BACU012991/1-769 GGRDPPAAPA LSTPEEPSAE RGLPKSSGRA GVAGKKPSRK P-AVSRGELR 301 350 ENSP00000406934/1-828 EQVDLAKTMT NLSPTILGNA VQLISSVPKG KLPIPPYSRM KTMEVYKIKS ENSBTAP00000021674/1-849 EPVDATKAIL S-SPGVIGNA VQVPSSVPRG KLPILPYSRV KTTQVYRSGA ENSTTRP00000011998/1-824 EQVDPARAAT HLSPGLIGNA VQVVPSIPRG KLPILPYSRA RASQVYKGGA bmy_13210T0/1-847 EQVDLARAAS HLSPGVTGNA VQVVSSIPGG KVPILPYSRT RASQVYKGGA BACU012991/1-769 EQVDLARAAS HLSPGVTGNA LQVVSSIPGG KVPILPYSRT RASQVYKGGA 351 400 ENSP00000406934/1-828 DANIAGFSLP GPKADCDKIP STTEGFNAAT KVASRLPVPQ VSQQSACESA ENSBTAP00000021674/1-849 TVNTAHVPFP GLRTARDQTP SIPEGFSAAP QVGDRGPAPP APGQSPGNSA ENSTTRP00000011998/1-824 AVNVTHVSLP GLRAAGDKTS SIPEGFCSAP QVADRAPAPQ ASWQSPCDRA bmy_13210T0/1-847 AVNLEDVSLS GLRAAGDKTS SVLEGFCSAP QVADRGPAPQ ASRQSPCDRA BACU012991/1-769 AVNLADVSLP GLGAAGDKTS SVPEGFCSAP QVADRGPAPQ ASRQSPCDRA 401 450 ENSP00000406934/1-828 FCPPTKLDLN HKTKLNSGAA KRKGRKRKVP DEILAFQGKR RKYIINKCRD ENSBTAP00000021674/1-849 FCQATKPDLN HKTKLNGETA KRRGRKRKGP DELLTFQGKR WKCVLS-CKD ENSTTRP00000011998/1-824 YCPATKADLN HKTKPNGGAA KRRGRKRKVP DELLTFQGKR RKCVSNKCKD bmy_13210T0/1-847 YCPATKADLN HKTKPNGGAA KRRGRKRKVP DELLTFQGKR RKCVISKCKD BACU012991/1-769 YCPATKADLN HKTKPNGGAA KRRGRKRKVP DELLTFQGKR RKCVINKCKD 451 500 ENSP00000406934/1-828 GKERVKNDPQ EFRDQKLGTL KKYRSIMPKP IMVIPTLASL ASP-TTLQSQ ENSBTAP00000021674/1-849 SKARVKSEPQ ESRDQKPEAV KKYRSIMPKP VPVLPALAL- --PPATLQPP ENSTTRP00000011998/1-824 GKERAKAEPQ ESRDQKPGAV KKYRSIMPKP VLVLPALAAL ASPAATLQPP bmy_13210T0/1-847 GKERAKADPQ ESRDQKPGVV KKYRSIMPKP VLVLPALAPL ASPAATLQPP BACU012991/1-769 GKERAKADPQ ESKDQKPGAV KKYRSIMPKP VLVLPALAPL ASPAATLQPP 501 550 ENSP00000406934/1-828 MLGGLGQDVL LNNSL-TPKY LGCKQDNSSS PKPSSVFRNG FSGIKKPWHR ENSBTAP00000021674/1-849 PPGSLGH-MS FDHSL-APNH LDWKEDGQP- PKPDSAFRNG FSGLRKTWHK ENSTTRP00000011998/1-824 APGSREH-AS FNHSLAAPKH LGCRQDDGPS PKPGSAFRNG FPGLKKPSHG bmy_13210T0/1-847 APSSRGH-AS FNHSL-APKH PGCRPDEGPS PKPSSTFRNG FSGLKKPWHG BACU012991/1-769 APGSRGH-AS FNHSL-APKH PGGRPGEGPS PKPGSAFRNG FSGLKKPWHG 551 600 ENSP00000406934/1-828 CHVCNHHFQF KQHLRDHMNT HTNRRPYSCR ICRKSYVRPG SLSTHMKLHH ENSBTAP00000021674/1-849 CHVCDHPFPC KQHLREHTSA SPDSRPYSCR LCRKVYKRRG SLSAHVRLHH ENSTTRP00000011998/1-824 CHVCEHAFQP KQHLRERANT HSDSRPYSCR LCRKAYVRPG SLSAHVRLHH bmy_13210T0/1-847 CHVCEHAFQP KQHLREHANT HADSRPYSCR LCRKAYVRPG SLSAHVRLHH BACU012991/1-769 CHVCEHTLQP KQHLREHAST HADSRPYSCR LCRKAYMRLG SLSAHVRLHH 601 650 ENSP00000406934/1-828 GENRLKKLMC CEFCAKVFGH IRVYFGHLKE VHRVVISTEP APS--ELQPG ENSBTAP00000021674/1-849 GDSRPRKLVC CEFCAKVFGH VRVYFGHLKE VHGVAISTEP SPC--EPQPG ENSTTRP00000011998/1-824 GDSRPRRLVC CEFCAKVFGH VRVYFGHLKE VHGVAVSTEP SPCEPQPQPG bmy_13210T0/1-847 GDSRPRRLVC CEFCAKVFGH VRVYFGHLKE AHGVAVSTEP QP---QPQPG BACU012991/1-769 GDSRPRRLVC CEFCAKVFGH VRVYFGHLKE AHGVAVSTEP -----QPQPG 651 700 ENSP00000406934/1-828 DIPKNRDMSV RGMEGSLERE NKSNLEEDFL LNQADEVKLQ IKCGRCQITA ENSBTAP00000021674/1-849 DLPRTREQTP CEVEGLVDRE TKSSLEEDLL MNQNDEAGFQ IRCGRCQITA ENSTTRP00000011998/1-824 DLLRTREQTA RGMEGPVDRE TKSSLEEDLL LNQADEVKFQ IRCGRCQITA bmy_13210T0/1-847 DLLRTREQTA RGMEGPVDRE TKSSLEEDLL LNQADEVKFQ IRCGRCQITA BACU012991/1-769 DLLRTRKQTA RGMEGPVDRE TKSSLEEDLL LNQADEVKFQ IRCGRCQITA 701 750 ENSP00000406934/1-828 QSFAEIKFHL LDVHGEEIEG RLQEGTFP-- GSKGTQEELV QHASPDWKRH ENSBTAP00000021674/1-849 QSLAEIKFHL LSVHGEEIQG QLPEESSPSS GSRPAHGELT KQAAPFWK-R ENSTTRP00000011998/1-824 QSFAEIKFHL LYVHGEEIQG QLQEELSPSP GSRGAQGELV QQAAPFWK-H bmy_13210T0/1-847 QSFAEIKFHL LYVHGEEIQG QLQEEISPSL GSRGAQGELV PQAAPFWK-H BACU012991/1-769 QSFAEIKFHL LYVHGEEIQG QLQEEISPSL GSRGAQGELV PQAAPFWK-H 751 800 ENSP00000406934/1-828 PERGKPEKVH SSSEESHACP RLKRQLHL-H QNGVEMLMEN EGPQSGTNKP ENSBTAP00000021674/1-849 PERRKLLRHH PSAGELCAVP RLKRQLYLHH QNNVETLTKQ ERAQPGPSEP ENSTTRP00000011998/1-824 PERRKQLTHR PLDGELCAVP RLKKQLYLRH QNEVEILAKR ERAQPGPSEP bmy_13210T0/1-847 PERRKQLKHR PLDGELCAVP RLKKQLYLRH QNDVEILAKH EGAQPGPSEP BACU012991/1-769 PERRKQLKHR PLDGELCAVP RLKKQLYLRH QNDVEILAKH EGAQPGSSEP 801 850 ENSP00000406934/1-828 RETCQGPECP GLHTFLLWSH SGFNCLLCAE MLGRKEDLLH HWKHQHNCED ENSBTAP00000021674/1-849 RGDPQGPKCP GPQAALPLPQ SGFNCVLCVQ ILGSKEELLL HWERQHKCED ENSTTRP00000011998/1-824 GGHPQGPEGP GPDAALSPPR PGFRCVLCAQ MLGRKEELLL HWEERHKCED bmy_13210T0/1-847 GGHPQGPEGP GPDAALSPPQ PGFNCVLCAQ TLGRREELLL HWEEQHRCQD BACU012991/1-769 GGHPQVPEGP GPDAALSPPR PGFNCVLCAQ TLGRREELLL HWEEQHKCED 851 900 ENSP00000406934/1-828 PSKLWAILNT VSNQGVIELS SEAEK ENSBTAP00000021674/1-849 PPKLWTIFST LSSQGVVQLS SKTGK ENSTTRP00000011998/1-824 PLKLWTVLST LSSQGVIEPS SETGK bmy_13210T0/1-847 PPTLWKLLSS LSSQGAAQRS GQSGK BACU012991/1-769 PPTLWTLLGE LSSQGAVQRS GESGK