KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:08 2014 Check: 00 .. Name: ENSP00000393139/1-574 Len: 647 Check: 9920 Weight: 1.00 Name: ENSBTAP00000021696/1-576 Len: 647 Check: 98 Weight: 1.00 Name: ENSTTRP00000005873/1-572 Len: 647 Check: 8408 Weight: 1.00 Name: bmy_09082T0/1-435 Len: 647 Check: 5864 Weight: 1.00 Name: BACU006372/1-391 Len: 647 Check: 5962 Weight: 1.00 // 1 50 ENSP00000393139/1-574 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021696/1-576 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005873/1-572 ---------- ---------- ---------- ---------- ---------- bmy_09082T0/1-435 AIRSSKAGSA AQARLADSLG GHSRRRRPRR LGSQRSRIPL NLCRVSQLLC BACU006372/1-391 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000393139/1-574 ---------- --------ME ASLGIQMDEP MAFSPQRDRF QAEGSLKKNE ENSBTAP00000021696/1-576 ---------- --------ME PALGIQMDEP MAFSPLGGRF QAEGSLKKQE ENSTTRP00000005873/1-572 ---------- --------ME ASLGIQMQEP TAFS--RGRF LADGSL-KHE bmy_09082T0/1-435 SPCGHDPLAG VLRRSCFAME ASLXIQMEEP TAFSPLRGRF LADGSLKKHE BACU006372/1-391 ---------- ---------- ------MEEP TAFSPLRGRF LADGSLKKHE 101 150 ENSP00000393139/1-574 QNFKLAGVKK DIEKLYEAVP QLSNVFKIED KIGEGTFSSV YLATAQLQVG ENSBTAP00000021696/1-576 QNFKPPGVKK DIEKLYEAVP QLGNLFKIKD KIGEGTFSSV YLATAQLQVG ENSTTRP00000005873/1-572 QNFKLPGVKK DIQKLYEAVP QLGNVFKIKD KIGEGTFSSV YLATTQLKVG bmy_09082T0/1-435 RNFKLPGVKK DIQKLYEAVP QLGNVFKIKD KIGEGTFSSV YLATTQLQVG BACU006372/1-391 QNFKLPGVKK DIQKLYEAVP QLGNVFKIKD KIGEGTFSSV YLATTQLQVG 151 200 ENSP00000393139/1-574 PEEKIALKHL IPTSHPIRIA AELQCLTVAG GQDNVMGVKY CFRKNDHVVI ENSBTAP00000021696/1-576 PEEKIALKHL IPTSHPIRIA AELQCLTVAG GQDNVMGVKY CFRKNDHVVI ENSTTRP00000005873/1-572 PEEKIALKHL IPTSHPVRIA AELQCLTVAG GQDNVMGVKY CFRKNDHVVI bmy_09082T0/1-435 PEEKIALKHL IPTSHPVRIA AELQCLTVAG GQDNVMGVKY CFRKNDHVVI BACU006372/1-391 PEEKIALKHL IPTSHPVRIA AELQCLTVAG GQDNVMGVKY CFRKNDHVVI 201 250 ENSP00000393139/1-574 AMPYLEHESF LDILNSLSFQ EVREYMLNLF KALKRIHQFG IVHRDVKPSN ENSBTAP00000021696/1-576 AMPYLEHESF LDILNSLSFQ EVREYMFNLF KALKRIHQFG IVHRDVKPSN ENSTTRP00000005873/1-572 AMPYLEHESF LDILNSLSFQ EVREYMFNLF KALKRIHQFG IVHRDVKPSN bmy_09082T0/1-435 AMPYLEHESF LDILNSLSFQ EVREYMFNLF KALKRIHQFG IVHRDVKPSN BACU006372/1-391 AMPYLEHESF LDILNSLSFQ EVREYMFNLF KALKRIHQFG IVHRDVKPSN 251 300 ENSP00000393139/1-574 FLYNRRLKKY ALVDFGLAQG THDTKIELLK FVQSEAQQER CSQNKS-HII ENSBTAP00000021696/1-576 FLYNRRLKKY ALVDFGLAQG THDTKIELLK FVQSEAHQES CSQNKS-YVI ENSTTRP00000005873/1-572 FLYNRRLRKY ALVDFGLAQG THDTKIELLK FVQSEAQQES CSQNKS-YVI bmy_09082T0/1-435 FLYNRRLRQY ALVDFGLAQG TXDTKIELLK FVQSEAQQES CSQNKS-YVI BACU006372/1-391 FLYNRRLRQ- --------QQ QVAPRAGTPG FRAPEVLTKC PNQTTAIDMW 301 350 ENSP00000393139/1-574 TGNKIPLSGP V-PKELDQQS TTKASVKRPY TNAQIQIKQG KDGKEGSVGL ENSBTAP00000021696/1-576 TGNKISLSGP AAPKELDQQS TPKTSVKRPY TNTQTQTKHG KDGKEGSVGL ENSTTRP00000005873/1-572 TGNKISLSGP AAPKELDQQP TTKTAVKRPY TSAQIQIKQG KDGKEGSVGL bmy_09082T0/1-435 TGNKISLSGP AAPKELDQQP TTKTSLKRPY PDAQIQIKQG KDGKEGSVGL BACU006372/1-391 SAGVIFLSLL SGRYPFYKAS DDLTAL---- --AQIMTIRG S--------- 351 400 ENSP00000393139/1-574 SVQRSVFGER NFNIHSSISH ESPAVKLMKQ SKTVDVLSRK LATKKKAIST ENSBTAP00000021696/1-576 SVQRSVFGER NFNIHSSISH ESPAVKLMKQ SKTVDLLSRK LGTKKKTIST ENSTTRP00000005873/1-572 SVQRSVFGER NFNIHSSISH ESPAVKLMKQ SKTVDLLSRK LATKKKAIST bmy_09082T0/1-435 SVQRSVFGER NFNIHSSISH ESPAVKLMKQ SKT------- ---------- BACU006372/1-391 --RETIQAAK TFGKSILCSK EVPA------ ---------- ---------- 401 450 ENSP00000393139/1-574 KVMNSAVMRK TASSCPASLT CDCYATDKVC SICLSRRQQV APRAGTPGFR ENSBTAP00000021696/1-576 KVMNSGVMRK TASSCPATLT CDCYATDKVC SICLSRRQQV APRAGTPGFR ENSTTRP00000005873/1-572 KVTNSSVMRK TASSCPASLT CDCYATDKVC SICLSRRQQV APRAGTPGFR bmy_09082T0/1-435 ---------- ---------- ---------- ---------- ---------- BACU006372/1-391 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000393139/1-574 APEVLTKCPN QTTAIDMWSA GVIFLSLLSG RYPFYKASDD LTALAQIMTI ENSBTAP00000021696/1-576 APEVLTKCPN QTTAIDMWSA GVIFLSLLSG RYPFYKASDD LTALAQIMTI ENSTTRP00000005873/1-572 APEVLTKCPN QTTAIDMWSA GVIFLSLLSG RYPFYKASDD LTALAQIMTI bmy_09082T0/1-435 ---------- ---------- ---------- ---------- ---------- BACU006372/1-391 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000393139/1-574 RGSRETIQAA KTFGKSILCS KEVPAQDLRK LCERLRGMDS STPKLTSDIQ ENSBTAP00000021696/1-576 RGTRETIQAA KTFGKSILCS KEVPAQDLRK LCEKLRGINS TTPKLISDIQ ENSTTRP00000005873/1-572 RGSKETIQAA KTFGKSILCS KEVPAQDLRK LCEKLRGVNS NTPKLTSDIQ bmy_09082T0/1-435 ---------- ---------- ---------- ---------- --VDLLS--R BACU006372/1-391 ---------- ---------- -----QDLRK LCEKLRGVNS NTPKLTSDIQ 551 600 ENSP00000393139/1-574 GHASHQPAIS EKTD-HKASC LVQTPPGQYS GNSFKKGDSN SCEHCF--DE ENSBTAP00000021696/1-576 ECSSHDPAFS EKTENHKIVH FIQTPQAQPS GNPSYKGDGN GCGGNF--EE ENSTTRP00000005873/1-572 ELTSQDPAFS EKMD-HKGAH LIQTPKAQHS GNSLCKGDSN GCGGNL--DE bmy_09082T0/1-435 KLATKKKAXS TKV------- ---------M NSGVMRKTAS SCPASLTCDC BACU006372/1-391 ELTSQDPAFS EKMD-HKAAH LIQTPKAQHS GNSLYKGDSS GCGGNF--DE 601 650 ENSP00000393139/1-574 YNTNLEGWNE VPDEAYDLLD KLLDLNPASR ITAEEALLHP FFKDMSL ENSBTAP00000021696/1-576 SATNLEGWDE VPDEAYDLLD KLLDLNPASR ITAEEALLHP FFKDMSL ENSTTRP00000005873/1-572 SPTNLEGWDE VPDAAYDLLD KLLDLNPASR ITAEEALLHP FFKDMSL bmy_09082T0/1-435 YAT------- ---------D KVCSICLSR- ---------- ------- BACU006372/1-391 SPTNLEGWDE VPDAAYDLLD KLLDLNPASR ITAEEALLHP FFKDMSL