KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:09 2014 Check: 00 .. Name: ENSTTRP00000013207/1-701 Len: 736 Check: 7421 Weight: 1.00 Name: bmy_08894T0/1-731 Len: 736 Check: 6012 Weight: 1.00 Name: ENSP00000349748/1-707 Len: 736 Check: 2785 Weight: 1.00 Name: ENSBTAP00000021719/1-707 Len: 736 Check: 2953 Weight: 1.00 Name: BACU009658/1-410 Len: 736 Check: 9722 Weight: 1.00 // 1 50 ENSTTRP00000013207/1-701 MSRDRFRSRG GGGGGFHRRG GGGGRGGLHD FRSPPPGMGL NQNRGPLGPG bmy_08894T0/1-731 MSRDRFRSRG GGGGGFHRRG GGGGRGGLHD FRSPPPGMGL NQNRGPMGPG ENSP00000349748/1-707 MSRDRFRSRG GGGGGFHRRG GGGGRGGLHD FRSPPPGMGL NQNRGPMGPG ENSBTAP00000021719/1-707 MSRDRFRSRG GGGGGFHRRG GGGGRGGLHD FRSPPPGMGL NQNRGPMGPV BACU009658/1-410 ---MRFQN-- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013207/1-701 PGQGGPKPPI PPPPPHQQQQ QPPPQQPPPQ QPPPLQPPPH QPPHPQPPH- bmy_08894T0/1-731 PGQGGPKPPI PPPPPHQQQQ QPPPQQPPPQ QPPPLQPPPH QPPHPQPPH- ENSP00000349748/1-707 PGQSGPKPPI PPPPPHQQQQ QPPPQQPPPQ QPPPHQPPPH PQPHQQQ--- ENSBTAP00000021719/1-707 PGQGGPKPQI PPPPPHQQQQ QPPPQQPPPQ QPPPLQPPPH QPPHQQPPHQ BACU009658/1-410 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013207/1-701 QPPPPPQDSS KPAVPQGPGP APGVGSAPPA SGSAPPATPP TSGAP--TGP bmy_08894T0/1-731 PPPPPPQDSS KPVVPQGPGP APGVGSAPPA SGSAPPVTPP TSGAP--TGP ENSP00000349748/1-707 QPPPPPQDSS KPVVAQGPGP APGVGSAPPA SSSAPPATPP TSGAPPGSGP ENSBTAP00000021719/1-707 QPPPPPQDSS KSVVPQGPGS APGVGSAPPA TGSAPPATPP TSGAP--TGP BACU009658/1-410 -------EIS KMVCVKS--- ---------- ---------- ---------- 151 200 ENSTTRP00000013207/1-701 GPTPTPPSAV TSAPPGVPPP APPSSGVPTT PPQAGGPPPP PA--GVPGPG bmy_08894T0/1-731 GPTPTPPPAV TSAPPGAPPP APPSSGVPTT PPQAGGPPPP PV--GGPGPG ENSP00000349748/1-707 GPTPTPPPAV TSAPPGAPPP TPPSSGVPTT PPQAGGPPPP PAAVPGPGPG ENSBTAP00000021719/1-707 GPTPTPPPAV TSAPPGAPPP APPSSGVPTT PPQAGGPPPP PPA-GGPVPG BACU009658/1-410 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013207/1-701 PKQGPGAGGP KGGKMPGGPK PGGGPGLSTP GGHPKPPHRG GGEPRGGRQH bmy_08894T0/1-731 PKQGPGAVGP KGGKMPGGPK PGGGPGLSTP GGHPKPPHRG GGEPRGGRQH ENSP00000349748/1-707 PKQGPGPGGP KGGKMPGGPK PGGGPGLSTP GGHPKPPHRG GGEPRGGRQH ENSBTAP00000021719/1-707 PKQGPGPGGP KGGKMPGGPK PGGGPGLSTP GGHPKPPHRG GGEPRGGRQH BACU009658/1-410 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000013207/1-701 ----HQQHHQ GPPPGGPGGR SEEKISDSEG FKANLSLLRR PGEKTYTQRC bmy_08894T0/1-731 HTPYHQQHHQ GPPPGGPGGR SEEKISDSEG FKANLSLLRR PGEKTYTQRC ENSP00000349748/1-707 HPPYHQQHHQ GPPPGGPGGR SEEKISDSEG FKANLSLLRR PGEKTYTQRC ENSBTAP00000021719/1-707 HPPYHQQHHQ GPPPGGPGGR SEEKISDSEG FKANLSLLRR PGEKTYTQRC BACU009658/1-410 ---------- ---------- ---------G FKANLSLLRR PGEKTYTQRC 301 350 ENSTTRP00000013207/1-701 RLFVGNLPAD ITEDEFKRLF AKYGEPGEVF INKGKGFGFI KLESRALAEI bmy_08894T0/1-731 RLFVGNLPAD ITEDEFKRLF AKYGEPGEVF INKGKGFGFI KLESRALAEI ENSP00000349748/1-707 RLFVGNLPAD ITEDEFKRLF AKYGEPGEVF INKGKGFGFI KLESRALAEI ENSBTAP00000021719/1-707 RLFVGNLPAD ITEDEFKRLF AKYGEPGEVF INKGKGFGFI KLESRALAEI BACU009658/1-410 RLFVGNLPAD ITEDEFKRLF AKYGEPGEVF INKGKGFGFI KLESRALAEI 351 400 ENSTTRP00000013207/1-701 AKAELDDTPM RGRQLRVRFA THAAALSVRN LSPYVSNELL EEAFSQFGPI bmy_08894T0/1-731 AKAELDDTPM RGRQLRVRFA THAAALSVRN LSPYVSNELL EEAFSQFGPI ENSP00000349748/1-707 AKAELDDTPM RGRQLRVRFA THAAALSVRN LSPYVSNELL EEAFSQFGPI ENSBTAP00000021719/1-707 AKAELDDTPM RGRQLRVRFA THAAALSVRN LSPYVSNELL EEAFSQFGPI BACU009658/1-410 AKAELDDTPM RGRQLRVRFA THAAALSVRN LSPYVSNELL EEAFSQFGPI 401 450 ENSTTRP00000013207/1-701 ERAVVIVDDR GRSTGKGIVE FASKPAARKA FERCSEGVFL LTTTPRPVIV bmy_08894T0/1-731 ERAVVIVDDR GRSTGKGIVE FASKPAARKA FERCSEGVFL LTTTPRPVIV ENSP00000349748/1-707 ERAVVIVDDR GRSTGKGIVE FASKPAARKA FERCSEGVFL LTTTPRPVIV ENSBTAP00000021719/1-707 ERAVVIVDDR GRSTGKGIVE FASKPAARKA FERCSEGVFL LTTTPRPVIV BACU009658/1-410 ERAVVIVDDR GRSTGKGIVE FASKPAARKA FERCSEGVFL LTTTPRPVIV 451 500 ENSTTRP00000013207/1-701 EPLEQLDDED GLPEKLAQKN PMYQKERETP PRFAQHGTFE YEYSQRWKSL bmy_08894T0/1-731 EPLEQLDDED GLPEKLAQKN PMYQKERETP PRFAQHGTFE YEYSQRWKSL ENSP00000349748/1-707 EPLEQLDDED GLPEKLAQKN PMYQKERETP PRFAQHGTFE YEYSQRWKSL ENSBTAP00000021719/1-707 EPLEQLDDED GLPEKLAQKN PMYQKERETP PRFAQHGTFE YEYSQRWKSL BACU009658/1-410 EPLEQLDDED GLPEKLAQKN PMYQKERETP PRFAQHGTFE YEYSQRWKSL 501 550 ENSTTRP00000013207/1-701 DEMEKQQREQ VEKNMKDAKD KLESEMEDAY HEHQANLLRQ DLMRRQEELR bmy_08894T0/1-731 DEMEKQQREQ VEKNMKDAKD KLESEMEDAY HEHQANLLRQ DLMRRQEELR ENSP00000349748/1-707 DEMEKQQREQ VEKNMKDAKD KLESEMEDAY HEHQANLLRQ DLMRRQEELR ENSBTAP00000021719/1-707 DEMEKQQREQ VEKNMKDAKD KLESEMEDAY HEHQANLLRQ DLMRRQEELR BACU009658/1-410 DEMEKQQREQ VEKNMKDAKD KLESEMEDAY HEHQANLLRQ DLMRRQEELR 551 600 ENSTTRP00000013207/1-701 RMEELHNQEM QKRKEMQLRQ EEERRRREEE MMIRQREMEE QMRRQREESY bmy_08894T0/1-731 RMEELHNQEM QKRKEMQLRQ EEERRRREEE MMIRQREMEE QMRRQREESY ENSP00000349748/1-707 RMEELHNQEM QKRKEMQLRQ EEERRRREEE MMIRQREMEE QMRRQREESY ENSBTAP00000021719/1-707 RMEELHNQEM QKRKEMQLRQ EEERRRREEE MMIRQREMEE QMRRQREESY BACU009658/1-410 RMEELHNQEM QKRKEMQLRQ EEERRRREEE MMIRQREMEE QMRRQREESY 601 650 ENSTTRP00000013207/1-701 SRMGYMDP-- ---------X XXXXXXXXXX XXXXXXPYGS GGQKFPPLGG bmy_08894T0/1-731 SRMGYMDPLW EFFCTQECLR ERDMRMGGGG AMNMGDPYGS GGQKFPPLGG ENSP00000349748/1-707 SRMGYMDP-- ---------R ERDMRMGGGG AMNMGDPYGS GGQKFPPLGG ENSBTAP00000021719/1-707 SRMGYMDP-- ---------R ERDMRMGGGG AMNMGDPYGS GGQKFPPLGG BACU009658/1-410 SRMGYMDP-- ---------R ERDMRMGGGG AMNMGDPYGS GGQKFPPLGG 651 700 ENSTTRP00000013207/1-701 GGGIGYEANP GVPPATMSGS MMGSDMRTER FGQGGAGPVG GQGPRGMGPG bmy_08894T0/1-731 GGGIGYEANP GVPPATMSGS MMGSDMRTER FGQGGAGPVG GQGPRGMGPG ENSP00000349748/1-707 GGGIGYEANP GVPPATMSGS MMGSDMRTER FGQGGAGPVG GQGPRGMGPG ENSBTAP00000021719/1-707 GGGIGYEANP GVPPATMSGS MMGSDMRTER FGQGGAGPVG GQGPRGMGPG BACU009658/1-410 GGGIGYEANP GVPPATMSGS MMGSDMLMAN ---------- ---------- 701 750 ENSTTRP00000013207/1-701 TPAGYGRGRE EYEGP----- ---NKKPRF- ------ bmy_08894T0/1-731 TPAGTSPKPY ERLFPFDVAL NLESCSCYTV RMIDVG ENSP00000349748/1-707 TPAGYGRGRE EYEGP----- ---NKKPRF- ------ ENSBTAP00000021719/1-707 TPAGYGRGRE EYEGP----- ---NKKPRF- ------ BACU009658/1-410 ---------- ----P----- ---NSKC--- ------