KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:12 2014 Check: 00 .. Name: ENSP00000475670/1-753 Len: 976 Check: 7644 Weight: 1.00 Name: ENSBTAP00000021739/1-740 Len: 976 Check: 5236 Weight: 1.00 Name: ENSTTRP00000006195/1-755 Len: 976 Check: 5094 Weight: 1.00 Name: bmy_01696T0/1-863 Len: 976 Check: 4681 Weight: 1.00 Name: BACU001208/1-821 Len: 976 Check: 8012 Weight: 1.00 // 1 50 ENSP00000475670/1-753 ---------- ---------- ---------M ESSDVELDLQ RSVQAVLREL ENSBTAP00000021739/1-740 ---------- ---------- ---------M ESSDVELDLQ RSVQAVLREL ENSTTRP00000006195/1-755 ---------- ---------- ---------M ESSXXXXXXX XXXXXXXXXX bmy_01696T0/1-863 ---------- ---------- ---------M ESSDVDLDLQ RSVHAVLREL BACU001208/1-821 MQAASSKLIT SGHLLRLGEE AKDILRESGG GSKDVDLDLQ RSVHAVLREL 51 100 ENSP00000475670/1-753 STQAPALQSN QGMWRWSLHK KVERDPGKSP VLVRILLREL EKAESQDLRH ENSBTAP00000021739/1-740 SAQAPALQSN RGMWRWSLHK KVERDPGKSP MLVRILLREL EKAESEDARH ENSTTRP00000006195/1-755 XXXXXXXXXX XXMWRWSLHK KVERDPGKSP ALVRILLREL EKAESEDARH bmy_01696T0/1-863 SAQAPALPSN QGMWRWSLHK KVERDPGKSP ALVRILLREL EKAESEDARH BACU001208/1-821 SAQAPALPSN QGMWRWSLHK KVERDPGKSP ALVRILLREL EKAESEDARH 101 150 ENSP00000475670/1-753 VII------- ---------- ------PLLH TVMYVLTKAT GITEELYQRI ENSBTAP00000021739/1-740 III------- ---------- ------PLLH TLMYVLTKAT GITEELHRRT ENSTTRP00000006195/1-755 VII------- ---------- ------PLLH TLMYVLTKAT GITEELHRRT bmy_01696T0/1-863 VII------- ---------- ------PLLH TLMYVLTKAT GITEELHRRT BACU001208/1-821 VIIPLLHTLM YVLTKAESED ARHVIIPLLH TLMYVLTKAT GITEELHRRT 151 200 ENSP00000475670/1-753 YAFCTRLLTL PTPYCTVALD CAIRLKTEMA VP-------- ---------- ENSBTAP00000021739/1-740 YAFCTRLLTL PAPYCTIALD CAIRLKTETA VP-------- ---------- ENSTTRP00000006195/1-755 YAFCTRLLTL PAPYCTIALD CAIRLKTETA VP-------- ---------- bmy_01696T0/1-863 YAFCTRLLTL PAPYCTIALD CAIRLKTETA VPGKSHSSSA QGLAFLSRIP BACU001208/1-821 YAFCTRLLTL PAPYCTVALE CAMRLKTETA VP-------- ---------- 201 250 ENSP00000475670/1-753 ---------- ---------- ---------- GTLYQRMVIA EQNLTNELYP ENSBTAP00000021739/1-740 ---------- ---------- ---------- GTLYQRLVIA EQNLTSELYP ENSTTRP00000006195/1-755 ---------- ---------- ---------- GTLYQRLVIA EQNLRSELYP bmy_01696T0/1-863 GSSKAPAPSG KVENGGQRLR RWLAEVVCPA GTLYQRLVLA EQSLTSELYP BACU001208/1-821 ---------- ---------- ---------- GTLYQRLVIA EQNLTSELYP 251 300 ENSP00000475670/1-753 YQERVFLFVD PELVSASVCS ALLLEIEAAQ AQQTPETCMR HVVSHALQAA ENSBTAP00000021739/1-740 YRE------- ---------S ALLLEIEAAS GQQTPEACMR HVVSHALQAA ENSTTRP00000006195/1-755 YRERVFLFVD PELVSPSVCS ALLLEIEAAQ GQQTPEACMR HVVSHALQAA bmy_01696T0/1-863 YRERVFLFVD PEMVSPSVCS ALLLEIEAAQ GQQTPEACMR HVVSHALQAA BACU001208/1-821 FRERVFLFVD PELVSPSVCS ALLLEIEAAQ GQQTPEACMR HVVSHALQAA 301 350 ENSP00000475670/1-753 LGEACHAGAL HRKLQASPRR TLEHYFHAVV AALEQMASEA SPSREGHVER ENSBTAP00000021739/1-740 LGEACHAGAL QRKLLASSRP ALEGYFHAVV TAVEQMAREP SPSREGHLER ENSTTRP00000006195/1-755 LGEACEAGVL QRKLQTSSPR ALEHYFHAVV AAVEQMASEP SPSREGHLER bmy_01696T0/1-863 LGEACEAGVL QRKLQTSSRR ALERYFHAVV AAVEQMASEP SPSREGHLER BACU001208/1-821 LGEACEAGVL QRKLQTSSRR ALERYFHAVV AAVEQMASEP SPSREGHLER 351 400 ENSP00000475670/1-753 LEEIYCSLLG PAA---GRCG GDLVQERPPS IPLPSPYITF HLWTGEEQLW ENSBTAP00000021739/1-740 LEEIYCSLLG PAAAARGRCG GDSLQDEPLS VPLPSPRITF HLWTDEEQLW ENSTTRP00000006195/1-755 LEEIYCSLLG PAAAARGRCG GEPPQDRLPS IPLPSPHITF HLWTNEEQLW bmy_01696T0/1-863 LEEIYCSLLG PAAAARGRCG GDRPQDRLPS IPLPSPHITF HLWTDEEQLW BACU001208/1-821 LEEIYCSLLG PAEAARGRCG GDRPQARLPS IPLPSPHITF HLWTDEEQLW 401 450 ENSP00000475670/1-753 KELVLFLRPR SQLRLSADLE VLDLQGLRPD RELARVSVLS TDSGIERDLP ENSBTAP00000021739/1-740 KELVLFLRPQ TQLRLSADLE ALDLQGLLPD WELARASMLS TDSGIERDLP ENSTTRP00000006195/1-755 KELVLFLRPR SQLRLSADLE ALDLQGLLPD WELARASMLS TDSGIERDLP bmy_01696T0/1-863 EELVLFLRPR SQLRLSADLE ALDLQGFLPD RELARASVLS TDSGIERDLP BACU001208/1-821 EELVLFLRLR SQLRLSADLE ALDLQGFLPD RELARASVLS TDSGIERDLP 451 500 ENSP00000475670/1-753 TGADELPAPG SPEMERAGLQ RKGGIKKRAW PLDFLMPGSW DGPPGLHRRT ENSBTAP00000021739/1-740 LGADELLAPG SPEAERAGLQ RKGGIKKRVW PADIVMPGSW DGPPGLHRRT ENSTTRP00000006195/1-755 WGADEPPTPG SPEVEQARLK RKGGIKKRVW PPDILMPGSW DGPPGLHQRT bmy_01696T0/1-863 WGADEPPTPG SPEVERAGLQ RKGGIKKRVW PPDILMPGSW DGPPGLHRRI BACU001208/1-821 WGADEPPTPG SPEVERAGLQ RKGGIKKRVW PPDILMPSSW DGPPGLHRRI 501 550 ENSP00000475670/1-753 GRPSGDGEML PGVSRLHTAR VLVLGDDRML GRLAQAYHRL RKRETQKFCL ENSBTAP00000021739/1-740 GRPSGDGELL PGVSRLHTAR VLVLGDDRML GRLARAYRNL RKRETQRFCL ENSTTRP00000006195/1-755 GRPSGDRGLL PGVSRLHTAR VLVLGDDRMX XXXXXXXXXX XKRETQKFCL bmy_01696T0/1-863 GRPSGDRELL PGVSRLHTAR VL-------- ---------- ---------- BACU001208/1-821 GRPSGDRELL PGVSRLHTAH VLVLGDDRML GRLARAYHSL RKRETQKFCL 551 600 ENSP00000475670/1-753 TPRLSLQLYY IPVLAPEKPA ASRQPELGEL ATFLGRVDPW YQSNVNTLCP ENSBTAP00000021739/1-740 TPRLSLQLYY IPLLAPETSA ASRRSELGEL AAFLGRADPW YEGIVNSLCP ENSTTRP00000006195/1-755 TPRLSLQLYY IPVLASEKPT ASRRSELGEV AAFLGRADPW YESIVNTLCP bmy_01696T0/1-863 ---------- -------KPT ASRHSELGEL AAFLGRADPW YESVVNTLCP BACU001208/1-821 TPRLSLQLYY IPVLAPEKPT ASRHSELGEL AAFLGRADPW YESLVNTLCP 601 650 ENSP00000475670/1-753 AIHKLAEM-- ---------- ---PPSLDTS RTVDPFILDV ITYYIRMGTQ ENSBTAP00000021739/1-740 TIHKLAEM-- ---------- ---PLSLDTS QTVDPFILDA ITYYVRMGTQ ENSTTRP00000006195/1-755 AIHKLAEM-- ---------- ---PLSLDTS QPVDPFILDA ITYYVRMGTQ bmy_01696T0/1-863 AIHKLAEM-- ---------- ---PLSLDTS QTVDPFILDA VTYYVRMGTQ BACU001208/1-821 AIRKLAELEG QQGHLRERYG EDKPLSLDTS QTVDPFILDA ITYYVRMGTQ 651 700 ENSP00000475670/1-753 PIYFQIYTVK IFFSDLSQDP TEDIFLIELK VKIQDSKFPK DGFSPRRRGV ENSBTAP00000021739/1-740 PVYFQIYTVK IFSGDLSQDP AEDIFLTELK VKIQDSKFPK DSFSPRRRGV ENSTTRP00000006195/1-755 PIYFQIYAVK IFLSDLSQDP AEDIFLTELK VKIQDSKFPG ESLSPRRRGV bmy_01696T0/1-863 PIYFQIYAVK IFFSDLSQDP AEDIFLTELK VKIQDSKFPR DSLSPRRRGV BACU001208/1-821 PIYFQIYAVK IFFSDLSQDP AEDIFLTELK VKIQDSKFPR DSLSPRRRGV 701 750 ENSP00000475670/1-753 AEGPGAELSL CYQKALLSHR PREVTVS-RA TGLILKAIPA SDTEVSGSSH ENSBTAP00000021739/1-740 AEGPGAELSI CYQKALLSHR TREVTVSLRA TGLVLKTLPA SDTEVSGPTL ENSTTRP00000006195/1-755 AEGPGAELSV RYQKALLSHR TREVTVP-RA TGLVLKALPA GDTEVSGPTH bmy_01696T0/1-863 AEGPGAELSI CYQKALLSHR TREVTVSLRA AGLVLKALPA SDTEVSGPTH BACU001208/1-821 AEGPGAELSI CYQKALLSHR TREVTVSLRA AGLVLEALPA SDTE--GPTH 751 800 ENSP00000475670/1-753 CPLPAAPVTD HTCLNVNVTE VVKSSNLAGK SFSTVTNTFR TNNIQIQSRD ENSBTAP00000021739/1-740 CTPTAAPDTD HMCLKVSVTE IVKTSNLAGR SFSVVTNTFR TANIQIQSQD ENSTTRP00000006195/1-755 CPPTAAPETD HTCLNISVTE VVKTSNLAGR SFSTVTNTFR SANVQIQSQD bmy_01696T0/1-863 CPPTAAPDID HTCLNISVTE VVKTSNLAGR SFSTVTNTFR TANIQIQSQD BACU001208/1-821 CPPTAAPDID HTCLNISVTE VVKTSNLAGR SFSTVTNTFR TADIQIQSQD 801 850 ENSP00000475670/1-753 QRLLTLSLDK DDQRTFRDVV RFEVAPCPEP CSGAQKSKAP WLNLHGQQEV ENSBTAP00000021739/1-740 RRLLTLLLDK DSCRTYKDVV RFEVAPCPEP CSRTQKSKVL GLSSH-QQEM ENSTTRP00000006195/1-755 QRLLTLLLDK DSCRAYRDVA RFEVAPCPEP CSGAQKSKVL GLSSH-QEEI bmy_01696T0/1-863 QRLLTLLLDK DSCRMYRDVT RFEVAPCPEP CSGAQKSKAL GLSSH-QEEM BACU001208/1-821 QRLLTLLLDK DSCRMYRDVA RFEVAPCPEP CSGAQKSKVL GLSSH-QEEM 851 900 ENSP00000475670/1-753 EAIKAKPKPL LMPINT---- ---------- ---------- ---------- ENSBTAP00000021739/1-740 ERNKAKAKPL LIPINT---- ---------- ---------- ---------- ENSTTRP00000006195/1-755 ERTKAKAKPL RMPINT---- ---------- ---------- ---------- bmy_01696T0/1-863 ERTKAKAKPL LMPINTEPKG AAESLSLRAA GPRGRIHYPT RPKHSHQRLE BACU001208/1-821 ERTKAKAKPL LMPINT---- ---------- ---------- ---------- 901 950 ENSP00000475670/1-753 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021739/1-740 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006195/1-755 ---------- ---------- ---------- ---------- ---------- bmy_01696T0/1-863 QGSLGRLPAT SKSQQVPGAQ GAGRGGCDGA GPTRRAEEAL AKPCAQSPAP BACU001208/1-821 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000475670/1-753 ---------F SGIVQ----- ------ ENSBTAP00000021739/1-740 ---------F SGIVQ----- ------ ENSTTRP00000006195/1-755 ---------F SGIVQ----- ------ bmy_01696T0/1-863 CACVHSFVDF QSLPLPLKLP TRPLKP BACU001208/1-821 ---------F SGIVQ----- ------