KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:13 2014 Check: 00 .. Name: ENSP00000216223/1-551 Len: 567 Check: 5946 Weight: 1.00 Name: ENSBTAP00000021747/1-556 Len: 567 Check: 2349 Weight: 1.00 Name: bmy_01157T0/1-496 Len: 567 Check: 662 Weight: 1.00 Name: BACU000853/1-555 Len: 567 Check: 5739 Weight: 1.00 Name: ENSTTRP00000001028/1-558 Len: 567 Check: 1163 Weight: 1.00 // 1 50 ENSP00000216223/1-551 MAAPALSWRL PLLILLLPLA TSWAS----A AVNGTSQFTC FYNSRANISC ENSBTAP00000021747/1-556 MAVPALSCCL SLLVLLLLLA IPQTS----T AVNDASNITC FYNSRANVSC bmy_01157T0/1-496 MGTLQPATHA SSYQQMLPSS RASTTREPIS PVPGAGMGDC RSRPATSMPS BACU000853/1-555 MAAPALSWCL SFLVLLLPLA IPWAS----T SVNDASELTC FYNSRANISC ENSTTRP00000001028/1-558 MAAPALSWCL CLLV-LWPLA IPRAS----T SVNDASKLTC FYNSRANISC 51 100 ENSP00000216223/1-551 VWSQDGALQD TSCQVHA-WP DRRRWNQTCE LLPVSQASWA CNLILG-APD ENSBTAP00000021747/1-556 IWSHDEGLRA TTCCLHSRQP QRKQWNHTCE LQPVRPGSWA CNLVLGHSPE bmy_01157T0/1-496 RIKGVCGVDR QMYRISG--- --RQWNESCE LLPVKPGSWA CNLILG-PPD BACU000853/1-555 AWSRDGGPQL TTCHIHA-QP DKRQWNRSCE LLPVKPGSWA CNLILG-PPD ENSTTRP00000001028/1-558 AWSRDGGLQV TTCRIHA-QP DKRQWNESCE LLPVKPGSWA CNLILG-PPD 101 150 ENSP00000216223/1-551 SQKLTTVDIV TLRVLCREGV RWRVMAIQDF KPFENLRLMA PISLQVVHVE ENSBTAP00000021747/1-556 AQKLTVVDVM KLTVMCSEGG KWRRMMTQDI KPFDYIRLVP PHSLQVVRIE bmy_01157T0/1-496 SQKLTIVDVI NLTVMCREGE RWRRMMTQNF KPFDNIRLMS PHSLQVVHIG BACU000853/1-555 SQKLTIVDVI NLTVRCREGE RWRRMMTRNF KPFDNIRLMS PHSLQVVHIG ENSTTRP00000001028/1-558 SQKLTIVDVI NLTVMCREGE RWRRMMTQNF KPFDNIRLMS PHSLQVVHIE 151 200 ENSP00000216223/1-551 THRCNISWEI SQASHYFERH LEFEARTLSP GHTW-----E EAPLLTLKQK ENSBTAP00000021747/1-556 THRCNITWTV SQVSHYIQND VEFEARLRYA DHSW-----E DARLLTLRQN bmy_01157T0/1-496 THRCNITWNV SQFSHYLQSS VEFEARTRSP GCSW-----E DTLLLTLRQN BACU000853/1-555 THSCNITWNV SQFSHYIQSS VEFEVRTRSP GCSW-----E DTLLRTLRQN ENSTTRP00000001028/1-558 TRRCNITWNV SQFSHYIQQ- CEFEARTRPR DHSWQLFLPQ DTPLLTLRQN 201 250 ENSP00000216223/1-551 QEWICLETLT PDTQYEFQVR VKPLQGEFTT WSPWSQPLAF RTKPAALGKD ENSBTAP00000021747/1-556 QQWISLENLA PGTEYELQVR AKPRLGSHEV WSHWSQPLAF RTVPAETKKK bmy_01157T0/1-496 QQWISLEMLA PDTLYELQVR ARPQLGNHEA WSPWSQPLAF RTKPA----- BACU000853/1-555 QQWISLEMLA PDTLYELQVR ARPQLGNHEA WSPWSQPLAF RTKPAATRKK ENSTTRP00000001028/1-558 QQWISLETLA PDTLYELQVR ARPQLGNHEA WSPWSQPLVF RTRPAATRKK 251 300 ENSP00000216223/1-551 T--IPWLGHL LVGLSGAFGF IILVYLLINC RNTGPWLKKV LKCNTPDPSK ENSBTAP00000021747/1-556 IPPLPWLNHI FLGVGSFFGL VLLVYFLGSF RCIRLWLKNV LKCHIPDPSE bmy_01157T0/1-496 ---------- --GTDGELG- ---------- ------LKKV LKCHIPDPSE BACU000853/1-555 TPTLPWLGHI MLGLSCAFGF ALLVYFLTSF RYNGPWLKKV LKCHIPDPSE ENSTTRP00000001028/1-558 TLPLPSMGHI VLGLCCTFGF VVLVYLLTSF RYNGLWLKKV LKCHIPDPSE 301 350 ENSP00000216223/1-551 FFSQLSSEHG GDVQKWLSSP FPSSSFSPGG LAPEISPLEV LERD-KVTQL ENSBTAP00000021747/1-556 FFSQLSSEHG GDFQKWLSSP FPSSSFSRSG LDPEISPLEV LDRDAKATQL bmy_01157T0/1-496 FFSQLSSEHG GDFQ------ ---------- ---------V LDRDAKATQL BACU000853/1-555 FFSQLSSEHG GDFQKWLSSP FPSSSFSPSG PLPEISPLEV LDRDAKATQL ENSTTRP00000001028/1-558 FFSQLSSEHG RDFQKWLSSP FPSSSFSPSG PVPEISPLEV LDRDAKATQL 351 400 ENSP00000216223/1-551 LL--QQDKVP EPASLSSNHS LTSCFTNQGY FFFHLPDALE IEACQVYFTY ENSBTAP00000021747/1-556 LLL-QQDKGS SSSAETSGHS VTSCFTNQGY FFFHLPDALE IEACQVYFAY bmy_01157T0/1-496 LLLQQQDKGS SSSTETSGHS VTSCFTNQGY FFFHLPDALE IEACQVYFAY BACU000853/1-555 LLLQQQDKGS SSSTETSGHS VTSCFTNQGY FFFHLPNALE IEACQVYFAY ENSTTRP00000001028/1-558 LLLQQQDKGS SSSTETSGHS VTSCFTNQGY FFFHLPDALE IEACQVYFAY 401 450 ENSP00000216223/1-551 DPYSEEDPDE GVAGAPTGSS PQPLQPLSGE DDAYCTFPSR DDLLLFSPSL ENSBTAP00000021747/1-556 DPCTEE-LDE GGPRAPEGAL LPPLPTPPGD DDAYCTFPPG EDLLLFSPSL bmy_01157T0/1-496 DPFMEE-PDE GGPGVPEGAL LPPLPPPPGE EDAYCTFPPG DDLLLFSPSL BACU000853/1-555 DPFMEE-PDE GGPGVPEGAL LPPLPPPPGE EDAYCTFPPG DDLLLFSPSL ENSTTRP00000001028/1-558 DPFMEE-PDE GGPRAPEGAL LPPLPPPPGE EDAYCTFPSG DDLLLFSPSL 451 500 ENSP00000216223/1-551 LGGPSPPSTA PGGSGAGEER MPPSLQERVP RDWDPQPLGP PTPGVPDLVD ENSBTAP00000021747/1-556 LSGPGPPNTA QWGTGAGEER LASSPQEGVP GDWTPQPLRP PALEAPDLVD bmy_01157T0/1-496 LGGSGPPNTA VGDTGAGEEW LPPAPQEGVP GDWAPQPLGP PTPEAPDLVD BACU000853/1-555 LGGPGPPNTA LGGIGAGEER LPSAPQEGVP GDWAPQPLGP PTPEAPDLVD ENSTTRP00000001028/1-558 LGGPGPPNTA LGGTGAGEER LPPTPQEGVP GDWAPQPLAP PTQEAPDLVD 501 550 ENSP00000216223/1-551 FQPPPELVLR EAGEEVPDAG PREGVSFPWS RPPGQGEFRA LNARLPLNTD ENSBTAP00000021747/1-556 LQSSPEHELG EARERVPGPS PREGTSFPWA SPPGQGQVRA PTVCLTLNTD bmy_01157T0/1-496 LQSPPERALG EAAVEVPVPS LREGAGFPWA SSPGQGQVRA PTSCLTLNTD BACU000853/1-555 LQSPPEPALG EAGVEVSVPS PREGAGFPWA SFPGQGQVRA PISCLTLNTD ENSTTRP00000001028/1-558 LQSPPEHALG EAGEEVPVPS PREGAGFPWA SSPGQGQVRA PTSCLTLNTD 551 600 ENSP00000216223/1-551 AYLSLQELQG QDPTHLV ENSBTAP00000021747/1-556 AYLSLQELQD QDPAYLV bmy_01157T0/1-496 AYLSLQELQD QDPAHTV BACU000853/1-555 VYLSLQELQD QDPAHAV ENSTTRP00000001028/1-558 AYLSLQELQD QDPAHTV