KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:14 2014 Check: 00 .. Name: BACU003995/1-438 Len: 538 Check: 2212 Weight: 1.00 Name: ENSP00000292431/1-527 Len: 538 Check: 7567 Weight: 1.00 Name: bmy_04850T0/1-303 Len: 538 Check: 3792 Weight: 1.00 Name: ENSTTRP00000006039/1-528 Len: 538 Check: 7227 Weight: 1.00 Name: ENSBTAP00000021751/1-532 Len: 538 Check: 5304 Weight: 1.00 // 1 50 BACU003995/1-438 MAQTLQMEIP NFGNSILECL NEQRLQGLYC DVSVVVKGHA FKAHRAVLAA ENSP00000292431/1-527 MAQTLQMEIP NFGNSILECL NEQRLQGLYC DVSVVVKGHA FKAHRAVLAA bmy_04850T0/1-303 MAQTLQMEIP NFGNSILECL NEQRLQGLYC DVSVVVKGHA FKAHRAVLAA ENSTTRP00000006039/1-528 MAQTLQMEIP NFGNSILECL NEQRLQGLYC DVSVVVKGHA FKAHRAVLAA ENSBTAP00000021751/1-532 MAQTLQMEIP NFGNSILECL NEQRLQGLYC DVSVVVKGHA FKAHRAVLAA 51 100 BACU003995/1-438 SSSYFRDLFN SSRSAVVELP AAVQPQSFQQ ILSFCYTGRL SMNMGDQFLL ENSP00000292431/1-527 SSSYFRDLFN NSRSAVVELP AAVQPQSFQQ ILSFCYTGRL SMNVGDQFLL bmy_04850T0/1-303 SSSYFRDLFN SSRSAVVELP AAVQPQSFQQ ILSFCYTGRL SMNMGDQFLL ENSTTRP00000006039/1-528 SSSYFRDLFN SSRSAVVELP AAVQPQSFQQ ILSFCYTGRL SMNMGDQFLL ENSBTAP00000021751/1-532 SSSYFRDLFN SSRSAVVELP AAVQPQSFQQ ILSFCYTGRL SMNMGDQFLL 101 150 BACU003995/1-438 MYTAGFLQIQ EIMEKGTEFF LKV-SSPSCD SQGLHAEEAP SSEPQSPVAQ ENSP00000292431/1-527 MYTAGFLQIQ EIMEKGTEFF LKV-SSPSCD SQGLHAEEAP SSEPQSPVAQ bmy_04850T0/1-303 MYTAGFLQIQ EIMEKGTEFF LKAGASPSGE HGGL------ ---PPTPII- ENSTTRP00000006039/1-528 MYTAGFLQIQ EIMEKGTEFF LKV-SSPSCD SQGLHAEEAP SSEPQSPVAQ ENSBTAP00000021751/1-532 MYTAGFLQIQ EIMEKGTEFF LKV-SSPSCD SQGLHSEEAP SSEPQSPVAQ 151 200 BACU003995/1-438 TSSWPACGTP LPLVSRVKTE QQESDSVQCT PVAKRL---- ---------- ENSP00000292431/1-527 TSGWPACSTP LPLVSRVKTE QQESDSVQCM PVAKRLWDSG QKEAGG--GG bmy_04850T0/1-303 ---------- ---------- ---------- -----LW--- ---------- ENSTTRP00000006039/1-528 TSSWPACGTP LPLVSRVKTE QQESDSVQCT PVAKRLWDSS QKEAGGGSSG ENSBTAP00000021751/1-532 TSSWPACGTP LPLVSRVKTE QQESDSVQCT PVAKRLWDSG QKEAGGSGGS 201 250 BACU003995/1-438 ---------- ---------- ---------- ---------- ---------- ENSP00000292431/1-527 NGSRKMAKFS TPDLAANRPH QPPPPQQAPV VAAAQP---A VAAGAGQPAG bmy_04850T0/1-303 ---------- ------LR-- ---PP----- ---------- ------PP-- ENSTTRP00000006039/1-528 NGSRKMAKFS TPDLAANR-- ---PPQQAPV VAAAQPTGVA GGPGAGQPAG ENSBTAP00000021751/1-532 NGSRKMAKFS TPDLAVNR-- ---PAQQAPV VAAAQPTGVA AGAGAGPPTG 251 300 BACU003995/1-438 ---------- ---------- ---PGTSSAY TSDSPGSYH- EEDEEEDAGE ENSP00000292431/1-527 G----VAAAG GVVSGPSTSE RTSPGTSSAY TSDSPGSYHN EEDEEEDGGE bmy_04850T0/1-303 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006039/1-528 G---VAAAAG GVVSGPSTSE RTSPGTSSAY TSDSPGSYH- EEDEEEDAGE ENSBTAP00000021751/1-532 GAAAAAAAAG GVVSGPSTSE RTSPGTSSAY TSDSPGSYHN EEDEEEDAGE 301 350 BACU003995/1-438 EGTDEQYRQI CNMYTMYSMM NVGQTAEKVE ALPEQVAPES RNRIRVRQDL ENSP00000292431/1-527 EGMDEQYRQI CNMYTMYSMM NVGQTAEKVE ALPEQVAPES RNRIRVRQDL bmy_04850T0/1-303 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006039/1-528 EGTDEQYRQI CNMYTMYSMM NVGQTAEKVE ALPEQVAPES RNRIRVRQDL ENSBTAP00000021751/1-532 EGTDEQYRQI CNMYTMYSMM NVGQTAEKVE ALPEQVAPES RNRIRVRQDL 351 400 BACU003995/1-438 ASLPAELINQ IGNRCHPKLY DEGDPSEKLE LVTGTNVYIT RAQLMNCHVS ENSP00000292431/1-527 ASLPAELINQ IGNRCHPKLY DEGDPSEKLE LVTGTNVYIT RAQLMNCHVS bmy_04850T0/1-303 ---------- ---------- ---------- ---GTNVYIT RAQLMNCHVS ENSTTRP00000006039/1-528 ASLPAELINQ IGNRCHPKLY DEGDPSEKLE LVTGTNVYIT RAQLMNCHVS ENSBTAP00000021751/1-532 ASLPAELINQ IGNRCHPKLY DEGDPSEKLE LVTGTNVYIT RAQLMNCHVS 401 450 BACU003995/1-438 AGTRHKVLLR RLLASFFDRN TLANSCGTGX XXXXXXXXXN R--------- ENSP00000292431/1-527 AGTRHKVLLR RLLASFFDRN TLANSCGTGI RSSTNDPRRK PLDSRVLHAV bmy_04850T0/1-303 AGTRHKVLLR RLLASFFDRN TLANSCGTGI RSSSNNPSRK PLDSRVLHAV ENSTTRP00000006039/1-528 AGTRHKVLLR RLLASFFDRN TLANSCGTGI RSSSNNPSRK PLDSRVLHAV ENSBTAP00000021751/1-532 AGTRHKVLLR RLLASFFDRN TLANSCGTGI RSSSNNPSRK PLDSRVLHAV 451 500 BACU003995/1-438 --WIVASCTL SSESEMNAIA ADMCTNARRV VRKSWIPKVK PLMAEGDAYT ENSP00000292431/1-527 KYYCQNFAPN FKESEMNAIA ADMCTNARRV VRKSWMPKVK VLKAEDDAYT bmy_04850T0/1-303 KYYCQNFAPN FKESEMNAIA ADMCTNARRV VRKSWIPKVK PLMAEGDAYT ENSTTRP00000006039/1-528 KYYCQNFAPN FKESEMNAIA ADMCTNARRV VRKSWIPKVK PLMAEGDAYT ENSBTAP00000021751/1-532 KYYCQNFAPN FKESEMNAIA ADMCTNARRV VRKSWIPKVK PLMAEGDAYT 501 550 BACU003995/1-438 TFISYTGKIE PDMMGVEHGF ETASHDGEAG PSAEEALQ ENSP00000292431/1-527 TFISETGKIE PDMMGVEHGF ETASHEGEAG PSA-EALQ bmy_04850T0/1-303 TFISYTGKIE PDMMGVEHGF ETASHDGEAG PSAEEALQ ENSTTRP00000006039/1-528 TFISYTGKIE PDMMGVEHGF ETASHDGEAG PSAEEALQ ENSBTAP00000021751/1-532 TFISYTGKIE PDMMGVEHGF ETASHDGEAG PSAEEALQ