KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:18 2014 Check: 00 .. Name: ENSTTRP00000006056/1-671 Len: 678 Check: 9910 Weight: 1.00 Name: ENSP00000272286/1-673 Len: 678 Check: 1120 Weight: 1.00 Name: ENSBTAP00000021770/1-669 Len: 678 Check: 5010 Weight: 1.00 Name: bmy_00341T0/1-387 Len: 678 Check: 8561 Weight: 1.00 Name: BACU013910/1-676 Len: 678 Check: 8580 Weight: 1.00 // 1 50 ENSTTRP00000006056/1-671 -----MAEEA PQETGLGDRA APQDDSGLQD SVFSSESDNS LYFTYSGQSN ENSP00000272286/1-673 -----MAGKA AEERGLPKGA TPQDTSGLQD RLFSSESDNS LYFTYSGQPN ENSBTAP00000021770/1-669 -----MAEEA PKKTGLERST APQDDLGLQD SVFSSESDNS LYFTYSGQPN bmy_00341T0/1-387 -----MVH-- SQRVGSMSRG -PRGLTSI-- ---------- ---------- BACU013910/1-676 MPLGPMAEET PQETGPGDRA APQDVSGLQD SVFSSESDNS LYFTYSGQSN 51 100 ENSTTRP00000006056/1-671 TLEVRDLSYQ VDIASQVPWF KQLSHFRMPW TSH--KDSCE LGIQNLSFKV ENSP00000272286/1-673 TLEVRDLNYQ VDLASQVPWF EQLAQFKMPW TSPSCQNSCE LGIQNLSFKV ENSBTAP00000021770/1-669 TLEVRDLSYQ MDMASQVPWF KQLAHFKMPW TSH--KDSCE QGIQNLSFKM bmy_00341T0/1-387 ---------- --MGCEHPW- ---------- ---------- ---------- BACU013910/1-676 TLEVRDLSYQ ADIASQVPWF KQLSHFRMPW TSH--RDSCE LGIQNLSFKV 101 150 ENSTTRP00000006056/1-671 RSGQMLAVIG SSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000272286/1-673 RSGQMLAIIG SSGCGRASLL DVITGRGHGG KIKSGQIWIN GQPSSPQLVR ENSBTAP00000021770/1-669 RSGQMLAVIG SSGCGRASLL DVITGRGPGG KIKSGQIWIN GQPSTAQLVR bmy_00341T0/1-387 ---------- --GLGR---- ---------- ---------- ---------- BACU013910/1-676 RSGQMLAVIG SSGCGRASLL DVITGRGHGG KIKSGQIWIN GQRSTPQLVR 151 200 ENSTTRP00000006056/1-671 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXQAQRD KRVDDVIAEL ENSP00000272286/1-673 KCVAHVRQHN QLLPNLTVRE TLAFIAQMRL PRTFSQAQRD KRVEDVIAEL ENSBTAP00000021770/1-669 KCVAHVRQHD QLLPNLTVRE TLAFVAQLRL PRNFSQAQRD KRVDDVIAEL bmy_00341T0/1-387 ---------- ---PLLT--- ---------- ---------- ---------- BACU013910/1-676 KCVAHVRQHD QLLPNLTVRE TLAFVAQLRL PRDFSQAQRD KRVDDVIAEL 201 250 ENSTTRP00000006056/1-671 RLRQCANTLM GNSYVRGVSG GERRRVSIAV QLLWNPGILI LDEPTSGLDS ENSP00000272286/1-673 RLRQCADTRV GNMYVRGLSG GERRRVSIGV QLLWNPGILI LDEPTSGLDS ENSBTAP00000021770/1-669 RLRQCANTRV GNIYVRGVSG GERRRVSIGV QLLWNPGILI LDEPTSGLDS bmy_00341T0/1-387 ---------- ---------- ---------- ---------- ---------- BACU013910/1-676 RLRQCANTRM GNAYVRGVSG GERRRVSIAV QLLWNPGILI LDEPTSGLDS 251 300 ENSTTRP00000006056/1-671 FTAHNLVKTL SRLAKGNRLV LLSIHQPCSD IFRLFDLVLL MTSGTTIYLG ENSP00000272286/1-673 FTAHNLVKTL SRLAKGNRLV LISLHQPRSD IFRLFDLVLL MTSGTPIYLG ENSBTAP00000021770/1-669 FTAHNLVKTL SRLAKGNRLV LLSIHQPRSD IFGLFDLVLL MTSGTTIYLG bmy_00341T0/1-387 ---------- ---------- ---------- ---------- ---------- BACU013910/1-676 FTAHNLVKTL SRLAKGNRLV LISIHQPRSD IFRLFDLVLL MTSGTTIYLG 301 350 ENSTTRP00000006056/1-671 AAEHMVQYFT AAGHPCPRYS NPADYYXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000272286/1-673 AAQHMVQYFT AIGYPCPRYS NPADFYVDLT SIDRRSREQE LATREKAQSL ENSBTAP00000021770/1-669 AAQHMVQYFT AVGHPCPRYS NPADYYVDLT SIDRRSKEQE VATRETARSL bmy_00341T0/1-387 ---------- ---------- ------VDLT SIDRRSKEQE VATREKAQSL BACU013910/1-676 SAQHMVQYFT AAGHPCPRYS NPADYYVDLT SIDRRSKEQE VATREKAQSL 351 400 ENSTTRP00000006056/1-671 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000272286/1-673 AALFLEKVRD LDDFLWKAET KDLDEDTCVE SSVTPLDTNC LPSPTKMPGA ENSBTAP00000021770/1-669 AALFKEKVRG FDDFLWTAES REQSVGTCVQ SPAP--DTNL FQAPTKLPGP bmy_00341T0/1-387 AALFQERIRG FDDFLWTVES REQGVGTYVR SPASPRDTNP LQTPTKLPGP BACU013910/1-676 AALFQERIRG FDDFLWTVES REQGVGTYMR SPASPRDTNP LQTPTKLPGP 401 450 ENSTTRP00000006056/1-671 XXXXXXXXXR QISNDFRDLP ALLIHGAEAC LMSLIIGFLY YGHGAVKLSF ENSP00000272286/1-673 VQQFTTLIRR QISNDFRDLP TLLIHGAEAC LMSMTIGFLY FGHGSIQLSF ENSBTAP00000021770/1-669 LQQFAILIRR QISNDFRDLP TLLIHGAEAC LMSLIIGFLY YGHGAIQLSL bmy_00341T0/1-387 LQQFDTLIRR QISNDFRDLP ALLIHGAEAC LMSLIIGFLY YGHGAVKLSF BACU013910/1-676 LQQFDTLIRR QISNDFRDLP ALLIHGAEAC LMSLIIGFLY YGHGTVKLSF 451 500 ENSTTRP00000006056/1-671 MDTVAVLFMI GALVPFNVIL DVIAKCHSER ALLYYELEDG LYTAEPYFFA ENSP00000272286/1-673 MDTAALLFMI GALIPFNVIL DVISKCYSER AMLYYELEDG LYTTGPYFFA ENSBTAP00000021770/1-669 TDTAALLFMI GALVPFNVIL DVISKCHSER ALLYYELEDG LYTAGPYFFA bmy_00341T0/1-387 MDMVALLFMI GALVPFNVIL DVIAKCHSER ALLYYELEDG LYTAEPYFFA BACU013910/1-676 MDTVALLFMI GALVPFNVIL DVIAKCHSER ALLYYELEDG LYAVEPYFFA 501 550 ENSTTRP00000006056/1-671 KILGELPEHC IYIIIYGMPT YWLANLRPGP EPFLLHFLLV WLVVFCCRTM ENSP00000272286/1-673 KILGELPEHC AYIIIYGMPT YWLANLRPGL QPFLLHFLLV WLVVFCCRIM ENSBTAP00000021770/1-669 KILGEFPEHC VYIIIYGMPI YWLANLRPGL EPFLLHFLLV WLVVFCCRVM bmy_00341T0/1-387 KILGELPEHC VYIIIYGMPT YWLTNLRPGP EPFLLHFLLV WLVVFCCRTM BACU013910/1-676 KILGELPEHC VYIIIYGMPI YWLANLRPGP EPFLLHFLLV WLVVFCCRTM 551 600 ENSTTRP00000006056/1-671 AMATAALFPT FHMSSFFGNA LYNSFYLTGG FMISLDNLWT XXXXXXXXXX ENSP00000272286/1-673 ALAAAALLPT FHMASFFSNA LYNSFYLAGG FMINLSSLWT VPAWISKVSF ENSBTAP00000021770/1-669 ALAAAALLPT FHMSSFFGNA LYNSFYLTGG FMISLDNLWT VPALISKVSF bmy_00341T0/1-387 ALATAALLPT FHMSSFFGNA LYNSFYLTGG FMISLDNLWT VPAWISKVSF BACU013910/1-676 ALATAALLPT FHMSSFFGNA LYNTFYLTGG FMISLDNLWT VPAWISKVSF 601 650 ENSTTRP00000006056/1-671 XXXXXXXXXX XXXXXXXXXX XXXXXTIPIP GDMILNAMGL GSYPLYAIYL ENSP00000272286/1-673 LRWCFEGLMK IQFSRRTYKM PLGNLTIAVS GDKILSVMEL DSYPLYAIYL ENSBTAP00000021770/1-669 LRWCFEGLMK IQFSGHAYYM EAGNITIRIP GDMILNSMGL NSYPLYAIYF bmy_00341T0/1-387 LRWCFEGLMQ IQFGGHTYHL AAGNITIPIP GDTILNAMGL GSYPLYTIYL BACU013910/1-676 LRWCFEGLMQ IQFGGHTYHL AAGNITIPIP GDTILNAMGL GSYPLYAIYL 651 700 ENSTTRP00000006056/1-671 FIIGISGGFM VLYYMSLKFI KQKSSQDW ENSP00000272286/1-673 IVIGLSGGFM VLYYVSLRFI KQKPSQDW ENSBTAP00000021770/1-669 FVIGISCGFV ILYYLSLRFI KQKSSQDW bmy_00341T0/1-387 VVIGISGGFM VLYYMSLKFI KQKSSQDW BACU013910/1-676 FIIGISGGFM VLYYMSLKFI KQKSSQDW