KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:19 2014 Check: 00 .. Name: ENSP00000260665/1-1394 Len: 1408 Check: 8819 Weight: 1.00 Name: ENSBTAP00000021773/1-1396 Len: 1408 Check: 1901 Weight: 1.00 Name: ENSTTRP00000006060/1-1393 Len: 1408 Check: 6019 Weight: 1.00 Name: bmy_00340T0/1-1037 Len: 1408 Check: 1671 Weight: 1.00 Name: BACU013909/1-1334 Len: 1408 Check: 9909 Weight: 1.00 // 1 50 ENSP00000260665/1-1394 MAALLRSARW LLRAGAAPRL PLSLRLLPGG PGRLHAASYL PAARAGPVAG ENSBTAP00000021773/1-1396 MAALLRSARW LLRATAAPYL PLSLRLLAGG PGRPHAALCL RAARARPVAG ENSTTRP00000006060/1-1393 MAALLRPARW LLRAGAAPHL PLSLRLLAGG PRRPHAAFCP HAARAGRVAG bmy_00340T0/1-1037 ---------- ---------- ---------- ---------- ---------- BACU013909/1-1334 ---------- ---------M PL-------- ---------- ---------- 51 100 ENSP00000260665/1-1394 GLLSPARLYA IAAKEK-DIQ EESTFSSRKI SNQFDWALMR LDLSVRRTGR ENSBTAP00000021773/1-1396 GLLSQARLHS IAAEKKNDLQ EEPTSSHRRN ASQFDWALMR LDNSVRRTGR ENSTTRP00000006060/1-1393 ALLSQARLYT IAAEKKNYLQ EEATSSHRRN TSQFDWALMR LDNSVRRTGR bmy_00340T0/1-1037 ELLSQARLYA IAAEKKNYLQ EEPSSSHRRN ASQFDWALMR LDNSVRRTGR BACU013909/1-1334 -LLKKRIIF- ---------- -KRSXXXXXN AGQFDWALMR LDNSVRRTGR 101 150 ENSP00000260665/1-1394 IPKKLLQKVF NDTCRSGGLG GSHALLLLRS CGSLLPELKL EERTEFAHRI ENSBTAP00000021773/1-1396 IPKTLLQKVF DNTCHSGSPG GNQALLLLRS CGSLLPELKL SERTEFAHKI ENSTTRP00000006060/1-1393 IPKTLLQKVF DNTCHSGSRG GNQALLLLRS CGSLLPELKL SERTEFAHRI bmy_00340T0/1-1037 IPKTLLQKVF DNICHSGSPG GNQALLLLRS CGSLLPELKL SERTEFAHRI BACU013909/1-1334 IPKTLLQKVF DNICHSGSPG GNQALLLLRS CGSLLPELKL SERTEFAHRI 151 200 ENSP00000260665/1-1394 WDTLQKLGAV YDVSHYNALL KVYLQNEYKF SPTDFLAKME EANIQPNRVT ENSBTAP00000021773/1-1396 WDELQKLGTV YDVSHYNALL KVYLQNEHKF SPTDFLAKME KGNVQPNRVT ENSTTRP00000006060/1-1393 WDKLQKLGTV YDVSHYNALL KVYLQNEYKF SPTDFLEKME KANIQPNRVT bmy_00340T0/1-1037 WDKLQKLGTV YDVSHYNALL KVYLQNEYKF SPTDFLEKME KANIQPNRVT BACU013909/1-1334 WDKLQKLGTV YDVSHYNALL KVYLQNEYKF SPTDFLEKME KANIQPNRVT 201 250 ENSP00000260665/1-1394 YQRLIASYCN VGDIEGASKI LGFMKTKDLP VTEAVFSALV TGHARAGDME ENSBTAP00000021773/1-1396 YQRLIAAYCN MGDIEGASTI LGFMKTKDLP VTEAVFSALV TGHARSGDME ENSTTRP00000006060/1-1393 YQRLIAAYCN MGDIEGASKI LGFMKTKDLP VTEAVFSALV TGHARAGDME bmy_00340T0/1-1037 YQRLIAAYCN MGDIEGAR-- ---------- ---------- -------DME BACU013909/1-1334 YQRLIAAYCN MGDIEGASKI LGFMKTKDLP VTEAVFSALV TGHARAGDME 251 300 ENSP00000260665/1-1394 NAENILTVMR DAGIEPGPDT YLALLNAYAE KGDIDHVKQT LEKVEKSELH ENSBTAP00000021773/1-1396 NAENILTVMK EAGIEPGPDT YLALLNAYAE KGDIDHVKQT LEKVEKSDLY ENSTTRP00000006060/1-1393 NAENILTVMK EAGIEPGPDT YLALLNAYAE KGDIDHVKQT LEKVEKSDLY bmy_00340T0/1-1037 NAENILTVMK EAGIEPGPDT YLALLNAYAE KGDIDHVKQV YE-------- BACU013909/1-1334 NAENILTVMK EAGIEPGPDT YLALLNAYAE KGDIDHVKQT LEKVEKSDLY 301 350 ENSP00000260665/1-1394 LMDRDLLQII FSFSKAGYPQ YVSEILEKVT CERRYIPDAM NLILLLVTEK ENSBTAP00000021773/1-1396 LMDRDLLQII LSFSKAGYPQ YVPEILEKIT YERRYIPDTM NLILLLVTEK ENSTTRP00000006060/1-1393 LMDRDILQII FSFSKAGYPQ YVSEILEKIT YERRYIPDTM NLILLLVTEK bmy_00340T0/1-1037 ---------- ---------- ---------- ---------- ---------- BACU013909/1-1334 LMDRDILQII FSFSKAGYPQ YVSEILEKIT YERRYIPDTM NLILLLVTEK 351 400 ENSP00000260665/1-1394 LEDVALQILL ACPVSKEDGP SVFGSFFLQH CVTMNTPVEK LTDYCKKLKE ENSBTAP00000021773/1-1396 LEDTALQILL ACPISRESSL NDFGSFFLRH CVTVNTPPEQ LRDYCKKLKE ENSTTRP00000006060/1-1393 LEDTALQILL ACPISREDSL SDFGSFFLRH CVTMNTPAEK LKDYCKKLKE bmy_00340T0/1-1037 ---------- ---------- ---------- ---------- ---------- BACU013909/1-1334 LEDTALQILL ACPISRENSL SDFGSFFLRH CVTMNTPAEK LKDYCKKLKE 401 450 ENSP00000260665/1-1394 VQMHSFPLQF TLHCALLANK TDLAKALMKA VKEEGFPIRP HYFWPLLVGR ENSBTAP00000021773/1-1396 AQLHTSPLQF TLQCALVAQK FDLAKVLMKA LKEEGFPIRT HYFWPLLVGH ENSTTRP00000006060/1-1393 AQMHTSPFQF TLHCALLAKK MDLAKALMKA LKEEGFPIRT HYFWPLLVGH bmy_00340T0/1-1037 ---------- ---------- ---------- ---------- ---------- BACU013909/1-1334 AQMHTSPFQF TLQCALLARK FDLAKALMKA LKEEGFPIRT HYFWPLLVGH 451 500 ENSP00000260665/1-1394 RKEKNVQGII EILKGMQELG VHPDQETYTD YVIPCFDSVN SARAILQENG ENSBTAP00000021773/1-1396 QKEKNVQGIV EVLKGMHEMG VTPDQETYVN YVFPSFDSIE SVRAVLQENG ENSTTRP00000006060/1-1393 QKEKNVQXXX XXXXXXXXXX XXXXXXXXXX XXXPCFDSVK SARAI-QENG bmy_00340T0/1-1037 ---------- ---------- ---------- -----YKSLE QVSVILVE-- BACU013909/1-1334 QKEKNVQGIV EVLKGMHEIG VTPDQETYIN YVFPCFDSVK SVRAILQENE 501 550 ENSP00000260665/1-1394 CLSDSDMFSQ AGLRSEAANG NLDFVLSFLK SNTLPISLQS IRSSLLLGFR ENSBTAP00000021773/1-1396 CPHDDNVFSQ AELRSKAVNG NLDYILSFME SNTLPFSFAS LRGSLILGFR ENSTTRP00000006060/1-1393 CLHEDSIFSQ AELRIEAVNG NLDYILSFLE SNTLPLSFAS LRGSLILGFR bmy_00340T0/1-1037 C--------- ---------- ---FLLFF-- ---------- ---------- BACU013909/1-1334 CLHEDSIFSQ AELRIEAVNG NLDYILSFLE SNTLPFSFAS LRGSLILGFR 551 600 ENSP00000260665/1-1394 RSMNINLWSE ITELLYKDGR YCQEPRGPTE AVGYFLYNLI DSMSDSEVQA ENSBTAP00000021773/1-1396 RSMNINLWSK ITELLYKDGR YCQEPPGPTE AVGYFLYNLI DSMSDSEVQA ENSTTRP00000006060/1-1393 RSMNINLWSK ITKLLYKDGR YCQEPPGPTE AVGYFLYNLI DSMSDSEVQA bmy_00340T0/1-1037 ---------- ---------- -------STE AVGYFLYNLI DSMSDSEVQA BACU013909/1-1334 RSMNINLWSK ITELLYKDGR YCQEPPGPTE AVGYFLYNLI DSMSDSEVQA 601 650 ENSP00000260665/1-1394 KEEHLRQYFH QLEKMNVKIP ENIYRGIRNL LESYHVPELI KDAHLLVESK ENSBTAP00000021773/1-1396 KEEHLRQYFH QLKEMNVKIP ENIYRGIRNL LDSYHVPELI KDVNILVERE ENSTTRP00000006060/1-1393 KEEHLRQYFH QLMEMNVKIP ENIYRGIRNL LDSYHVPELI KDVNMLVERE bmy_00340T0/1-1037 KEERLRQYFH QLMEMNVKIP ENIYRGIRNL LDSYHVPELI KDVNMLVERE BACU013909/1-1334 KEERLRQYFH QLMEMNVKIP ENIYRGIRNL LDSYHVPELI KDVNMLVERE 651 700 ENSP00000260665/1-1394 NLDFQK--TV QLTSSELEST LETLKAENQP IRDVLKQLIL VLCSEE---- ENSBTAP00000021773/1-1396 KTDSRKISTS QPSSSDLESK LEKLKAENQP IGDILKQLIL MLCSEE---- ENSTTRP00000006060/1-1393 KTDSRK--TT QPTSSDLESK LEKLKAENQP IGDVLKQLIL MLCSEE---- bmy_00340T0/1-1037 KTDSRK--TT QPTSSDLESK LEKLKAENQP IGDVLKQLIL MLCSEEVTFN BACU013909/1-1334 KTDSRK--TT QPTSSDLESK LEKLKAENQP IGDVLKQLIL MLCSEE---- 701 750 ENSP00000260665/1-1394 -------NMQ KALELKAKYE SDMVTGGYAA LINLCCRHDK VEDALNLKEE ENSBTAP00000021773/1-1396 -------NMQ KALELKAKYE SDMVVGGYAA LINLCCRHDN AEDALNLKRE ENSTTRP00000006060/1-1393 -------NMH KALELKAKYE SDMVIGGYAS LINLCCRHDN AEEALNLKRE bmy_00340T0/1-1037 YFKYAIKNMQ KALELKAKYE SDMVIGGYAS LINLCCRHDN AEEALNLKRE BACU013909/1-1334 -------NMQ KALELKAKYE SDMVIGGYAS LINLCCRHDN AEEALNLKRE 751 800 ENSP00000260665/1-1394 FDRLDSSAVL DTGKYVGLVR VLAKHGKLQD AINILKEMKE KDVLIKDTTA ENSBTAP00000021773/1-1396 FDRLDSSAVL DTGKYVRLVK VLGKHGKLQD AINILKEMKE KDVLIKDATV ENSTTRP00000006060/1-1393 FDRLDSSAVL DTSKYVRLVK VLGKHGKLQD AINILKEMKE KDVLIKDATV bmy_00340T0/1-1037 FDRLDSSAVL DTSKYVRLVK VLGKHGKLQD AINILKEMKE KDVLIKDATV BACU013909/1-1334 FDRLDSSAVL DTSKYVRLVK VLGKHGKLQD AINILKEMKE KDVLIKDATV 801 850 ENSP00000260665/1-1394 LSFFHMLNGA ALRGEIETVK QLHEAIVTLG LAEPSTNISF PLVTVHLEKG ENSBTAP00000021773/1-1396 LSFFHILNGA ALRGETETVK QLHEAIVTLG LAKPSTTLSS PLVTLYLEKD ENSTTRP00000006060/1-1393 LSFFHILNGA ALRGETETVK QLHEAIVTLG LAKPSTTLSS PLVTLYLEKD bmy_00340T0/1-1037 LSFFHILNGA ALRGETETVK QLHEAIVTLG LAKPSTTLSS PLVTLYLEKD BACU013909/1-1334 LSFFHILNGA ALRGETETVK QLHEAIVTLG LAKPSTTLSS PLVTLYLEKD 851 900 ENSP00000260665/1-1394 DLSTALEVAI DCYEKYKVLP RIHDVLCKLV EKGETDLIQK AMDFVSQEQG ENSBTAP00000021773/1-1396 DLPAALESTI DCYEKYKILP RIHDVLCKLI EKGETELIQK AMDFVSQEQG ENSTTRP00000006060/1-1393 DLPTALEVTI DCYKKYKILP RIHDVLCKLI EKGETDLIQK AMDFVSQEQG bmy_00340T0/1-1037 DLPTALEVMI DCYEKYKILP RIHDVLCKLI EKGETDLIQK AMDFVSQEQG BACU013909/1-1334 DLPTALEVMI DCYEKYKILP RIHDVLCKLI EKGETDLIQK AMDFVSQEQG 901 950 ENSP00000260665/1-1394 EMVMLYDLFF AFLQTGNYKE AKKIIETPGI RARSARLQWF CDRCVANNQV ENSBTAP00000021773/1-1396 EMTMLYDLFF AFLQTGNYKE AKKIIETPGI RARPTRLQWF CDRCIANNQV ENSTTRP00000006060/1-1393 EMTMLYDLFF AFLQTGNYKE AKKIIETPGI RARPTRLQWF CDRCIASNQV bmy_00340T0/1-1037 EMTMLYDLFF AFLQTGNYKE AKKIIE---- ---------- ---------V BACU013909/1-1334 EMTMLYDLFF AFLQTGNYKE AKKIIETPGI RARPTRLQWF CDRCIASTQV 951 1000 ENSP00000260665/1-1394 ETLEKLVELT QKLFECDRDQ MYYNLLKLYK INGDWQRADA VWNKIQEENV ENSBTAP00000021773/1-1396 ETLEKLVELT QKLFECDRDQ LYYSLLKLYK VNGDWQKADA VWNKMQEENI ENSTTRP00000006060/1-1393 ETLEKLVELT QKLFECDRDQ LYYSLLKLYK VNGDWQRADA VWNKMQEENI bmy_00340T0/1-1037 ETLEKLVELT QKLFECDRDQ LYYNLLKLYK VNGDWQRADA VWNKMQEENI BACU013909/1-1334 ETLEKLVELT QKLFECDRDQ LYYNLLKLYK VNGDWQRADA VWNKMQEENI 1001 1050 ENSP00000260665/1-1394 IPREKTLRLL AEILREGNQE VPFDVPELWY EDEKHSLNSS SASTTEPDFQ ENSBTAP00000021773/1-1396 IPREKTLRLL AEILRNNNQD VPFDVPELWY EEEKDSP-TS LPSPVEVNLQ ENSTTRP00000006060/1-1393 IPRGRTLRLL AEILRNSNQE VPFDVPELWY EDEKHSL-TS SPSPVEVSLQ bmy_00340T0/1-1037 IPRGKTLRLL AEILRNSNQE VPFDVPELWY EDEKHSL-TS SPSPVEVSLQ BACU013909/1-1334 IPRGKTLRLL AEILRNSNQE VPFDVPELWY EDEKHSL-TS SPSPVEVSLQ 1051 1100 ENSP00000260665/1-1394 KDILIACRLN QKKGAYDIFL NAKEQNIVFN AETYSNLIKL LMSEDYFTQA ENSBTAP00000021773/1-1396 KELLNACRTR RNKDAFNIFL TAKKQNIVFD NEAYARLINL LLMKDNSTQA ENSTTRP00000006060/1-1393 KELLNACHRK KDKDAFNIFL KAKKQNVVFN SETYASLINL LLMKDNPTQA bmy_00340T0/1-1037 KELLNACHRK RDKDAFNIFL KAKKQNIVFD SETYASLINL LLMKDNPTQA BACU013909/1-1334 KELLNACHGR RDKDAFNIFL KAKKQNIVFN SETYACLINL LLMKDNPTQA 1101 1150 ENSP00000260665/1-1394 MEVKAFAETH IKGFTLNDAA NSRLIITQVR RDYLKEAVTT LKTVLDQQQT ENSBTAP00000021773/1-1396 MQVKDFAETH IKGFTLNDAA NSLLIITQVR RDYLKDALTT LKTALDLDQI ENSTTRP00000006060/1-1393 VQVKDFAETH IKGFTLNDAA NSRLIITQVR RDYLKDALTT LKTALDLEQI bmy_00340T0/1-1037 MQVKDFAETH IKGFTLNDAA NSLLIITQVR RDYLKDALTT LKTALDLEQI BACU013909/1-1334 MQVKDFAETH IKGFTLNDAA NSLLIITQVR RDYLKDAVTT LKTALDLEQI 1151 1200 ENSP00000260665/1-1394 PSRLAVTRVI QALAMKGDVE NIEVVQKMLN GLEDSIGLSK MVFINNIALA ENSBTAP00000021773/1-1396 PSRLAVTRLI QACALKGDTE SVQDIQKLVN GLEDSIGLSR MVFINNIALA ENSTTRP00000006060/1-1393 PSRIAVTRLI QACALKGDTE SIQDIQKLVN GLEDSIGLSR MVFINNIALA bmy_00340T0/1-1037 PSRVAVTRLI QACALKGDTE SIQDIQKLVN GLEDSIGLSR MVFINNIALA BACU013909/1-1334 PSRVAVTRLI QACALKGDTE SIQDIQKLVN GLEDSIGLSR MVFINNIALA 1201 1250 ENSP00000260665/1-1394 QIKNNNIDAA IENIENMLTS ENKVIEPQYF GLAYLFRKVI EEQLEPAVEK ENSBTAP00000021773/1-1396 QIKNNNIDVA IESIENMLTS ENQTVDPQYF GLAYLFRKVI EGQLEPALEK ENSTTRP00000006060/1-1393 QIKXXXXXXX XXXXXXXXXX XXXXXXXXXF GLAYLFRKVI EERLEPALEK bmy_00340T0/1-1037 QIKNNNIDGA IENIENMVTS GNQTMEPQYF GLAYLFRKVI EERLEPALEK BACU013909/1-1334 QIKNNNIDGA IENIENMLTS GNQTMEPQYF GLAYLFRKVI EEQLEPALEK 1251 1300 ENSP00000260665/1-1394 ISIMAERLAN QFAIYKPVTD FFLQLVDAGK VDDARALLQR CGAIAEQTPI ENSBTAP00000021773/1-1396 ISIMVERLAN QFAVYKPVTD LFLQLVDSGK VDDARALLQR CGAIAEQIPI ENSTTRP00000006060/1-1393 ISIMAERLAN QFAIYKPVTD LFLQLVDAGK VDDARALLQR CGAIAEQTPI bmy_00340T0/1-1037 ISIMAERLAN QFAIYKPVTD LFLQLVDSGK VDDARALLQR CGAIAEQTPI BACU013909/1-1334 ISIMAERLAN QFAIYKPVTD LFLQLVDSGK VDDARALLQR CGAIAEQTPI 1301 1350 ENSP00000260665/1-1394 LLLFLLRNSR KQGKASTVKS VLELIPELNE KEEAYNSLMK SYVSEKDVTS ENSBTAP00000021773/1-1396 LLVFCIRNSQ RSGKAPVMKS LLELIPELID KEEAYSCLMK SYVFDSDVAS ENSTTRP00000006060/1-1393 FLVYCIRNSR RSGKAPTVKS LLELIPELTE KEEAYTSIMK SYVLDSDVAS bmy_00340T0/1-1037 FLVFCIRNSR RPGKAPTVKS LLELIPELTE KEEAYTSIMK SYVLDSDVAS BACU013909/1-1334 FLVFCIRHSR RPGKAPTVKS LLELIPELTE KEEAYTSIMK SYVLDSDVAS 1351 1400 ENSP00000260665/1-1394 AKALYEHLTA KNTKLDDLFL KRYASLLKYA GEPVPFIEPP ESFEFYAQQL ENSBTAP00000021773/1-1396 AKALYESLTA KNVKLNDLFL KRYAVLLKNA GESVPFTEPP ESFEFYAKQL ENSTTRP00000006060/1-1393 AKALYENLTA KDVKLNDLFL KRYAVLLKNA GESVPFTEPP ESFEFYAKQL bmy_00340T0/1-1037 AKALYENLTA KDVKLNDLFL KRYAVLLKNA GESVPFTEPP ESFEFYAKQL BACU013909/1-1334 AKALYENLTA KDVKLNDLFL KRYAVLLKNA GESVPFTEPP ESFEFYAKQL 1401 1450 ENSP00000260665/1-1394 RKLRENSS ENSBTAP00000021773/1-1396 KESKETHL ENSTTRP00000006060/1-1393 KESKENPL bmy_00340T0/1-1037 KESKENPL BACU013909/1-1334 KESKENPL