KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:22 2014 Check: 00 .. Name: ENSTTRP00000001658/1-479 Len: 806 Check: 9566 Weight: 1.00 Name: ENSP00000217159/1-722 Len: 806 Check: 9478 Weight: 1.00 Name: ENSBTAP00000021795/1-718 Len: 806 Check: 9924 Weight: 1.00 Name: bmy_16429T0/1-789 Len: 806 Check: 1737 Weight: 1.00 Name: BACU011253/1-447 Len: 806 Check: 653 Weight: 1.00 // 1 50 ENSTTRP00000001658/1-479 ---------- ---------- ---------- ---------- ---------- ENSP00000217159/1-722 ---------- ---------- ------MPLH QLGDKP---- --LTFPSPNS ENSBTAP00000021795/1-718 ---------- ---------- ------MPQH STGDKPLVSK PQLVFPGPAS bmy_16429T0/1-789 MDSSRRLDRC WNSAPTPAAV AVTPSEMPQH SMGDKHFVSM PQLAFPGPPL BACU011253/1-447 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001658/1-479 ---------- ---------- ---------- ---------- ---------- ENSP00000217159/1-722 AMENGLDHTP PSRRASPGTP LSPGSLRSAA HSPLDTSKQP LCQLWAEKHG ENSBTAP00000021795/1-718 GTDSECDRTP PSRRVSLSAP LS-------- --------QP LCQ--PEKCG bmy_16429T0/1-789 ATNSECDCTP PSRRASLGSP LS-------- --------QP LCQPRPEKRG BACU011253/1-447 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001658/1-479 ---------- ---------- ---------- ---------- ---------- ENSP00000217159/1-722 ARGTHEVRYV SAGQS-VACG WWAFAPPCLQ VLNTPKGILF FLCAAAFLQG ENSBTAP00000021795/1-718 PRAAQEVCYV AAGQPGEACG WRAFAPMCLQ AFNTPQGFLL FLCVASFLQG bmy_16429T0/1-789 PRATQEVRYV ATGRPDQACG WRAFAPTCLQ AFNTPQGFLL FLCAASFLQG BACU011253/1-447 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000001658/1-479 ---------- ---------- ---------- ---------- ---------- ENSP00000217159/1-722 MTVNGFINTV ITSLERRYDL HSYQSGLIAS SYDIAACLCL TFVSYFGGSG ENSBTAP00000021795/1-718 MTVNGFINTV ITSIERRYDL HSYQSGLIAS SYDVAACLCL TFVSYFGGQG bmy_16429T0/1-789 MTVNGFINTV VTSIERRYDL HSYQSGLIAS SYDVAACLCL TFVSYFGGHG BACU011253/1-447 MTVNGFINTV ITSIERRYDL HSYQSGLIAS SYDVAACLCL TFVSYFGGHG 201 250 ENSTTRP00000001658/1-479 ---------- ---------- ---------- ---------- ---------- ENSP00000217159/1-722 HKPRWLGWGV LLMGTGSLVF ALPHFTAGRY EVELDAGVRT CPANPGAVCA ENSBTAP00000021795/1-718 HKPRWLGWGV LVMGAGSLVF ALPHFTAGRY EVQMDEVVGT CWANHSSTCK bmy_16429T0/1-789 HKPRWLGWGV LVMGAGSLVF SLPHFTAGPY EAQVDEAVGT CRANRSATCG BACU011253/1-447 HKPRWLGWGV LLMGAGSLVF SLPHFTTGPY EAQVDEAVGT CRANRSATCG 251 300 ENSTTRP00000001658/1-479 ---------- ---------- ------LYTL GVTYLDENVK SSYSPVYIAI ENSP00000217159/1-722 DSTSGLSRYQ LVFMLGQFLH GVGATPLYTL GVTYLDENVK SSCSPVYIAI ENSBTAP00000021795/1-718 DGASGLSSYR LVFMLGQFLH GMGATPLYTL GVTYLDENVK SSYSPVYIAT bmy_16429T0/1-789 GRASGLSSYQ LVFMLGQFLH GMGATPLYTL GVTYLDENVK SSYSPVYIAV BACU011253/1-447 GRASGLSSYQ LVFMLGQFLH GMGATPLYTL GVTYLDENVK SSYSPVYIAI 301 350 ENSTTRP00000001658/1-479 FYTAAILGPA AGYLVGGALL NIYTEIGQRX XXXXXXXXXX XXXXXXXXXX ENSP00000217159/1-722 FYTAAILGPA AGYLIGGALL NIYTEMGRRT ELTTESPLWV GAWWVGFLGS ENSBTAP00000021795/1-718 FYTAAILGPA AGYLVGGALL NIYTDISQQT QLTTESPLWV GAWWVGFLGA bmy_16429T0/1-789 FYTAAILGPA AGYLVGGALL NIYTEIGHRT ELTTESPLWV GAWWVGFLGT BACU011253/1-447 FYTAAILGPA AGYLVGGALL NIYTEIGHRT ELTTDSPLWV GAWWVGFLGT 351 400 ENSTTRP00000001658/1-479 XXXXXXXXXX XXXXXXXXXX SQRYMVMRAS DTHQLKDSSH RVTSNPDFGK ENSP00000217159/1-722 GAAAFFTAVP ILGYPRQLPG SQRYAVMRAA EMHQLKDSSR GEASNPDFGK ENSBTAP00000021795/1-718 GAAAFLVAIP ILGYPRQLPG SQRYVVMRAS ETYQLKDSSH KVTSNPDFGK bmy_16429T0/1-789 GAAAFLIAVP ILGYPRQLPG SQRYVVMRAS ETHQLKNSSH RVTSNPDFGK BACU011253/1-447 GAAAFLIAVP ILGYPRQLPG SQRYVVMRAS ETHQLKDRSH WVTSNPDFGK 401 450 ENSTTRP00000001658/1-479 TIRDLPLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000217159/1-722 TIRDLPLSIW LLLKNPTFIL LCLAGATEAT LITGMSTFSP KFLESQFSLS ENSBTAP00000021795/1-718 TISDLPLSIW LLLKNPTFIL LCLAGATEAT LIAGMSTFGP KFLESQFSLS bmy_16429T0/1-789 TIRDLPLSIW LLLKNPTFIL LCLAGATEAT LIAGMSTFGP KFLESQFSLS BACU011253/1-447 TIRDLPLSIW LLLKNPTFIL LCLAGATEAT LIAGMSTFGP KFLESQFSLS 451 500 ENSTTRP00000001658/1-479 XXXXXXXXXY LVVPAGGGGT FLGGFFVSRC KLRGSGIIRF CLLCSLTSML ENSP00000217159/1-722 ASEAATLFGY LVVPAGGGGT FLGGFFVNKL RLRGSAVIKF CLFCTVVSLL ENSBTAP00000021795/1-718 ASEAATLFGY LVVPAGGGGT FLGGFFVNKF KLRGSGIIKF CLLCTLVSLL bmy_16429T0/1-789 ASEAATLFGY LVVPAGGGGT FLGGVFVNKC KLRGLGAIRC CQLCGLVSML BACU011253/1-447 ASEAATLFGY LVVPAGGGGT FLGGFFVNKC KLRGSGIFKF CLLCTLVSML 501 550 ENSTTRP00000001658/1-479 AFLVFFMHCP NVPMAGVTAS YNGSLLPEGH LGLTDACNAA CGCQPEHYSP ENSP00000217159/1-722 GILVFSLHCP SVPMAGVTAS YGGSLLPEGH LNLTAPCNAA CSCQPEHYSP ENSBTAP00000021795/1-718 ASLIFLMHCP GVPMAGVTAG YNGSLLPEGH VELMAACNLH CGCQPEHYSP bmy_16429T0/1-789 AFFVFFAHCP NVPMAGVTAS YNGSLLPEGH LGLTAACNAA CGCQPEHYSP BACU011253/1-447 AFFVFFMHCP NVPMAGVTAS YNGSLLPKGH LGLTAACNAA CGCQPEHYSP 551 600 ENSTTRP00000001658/1-479 VCGPDGLMYY SPCHAGCPEA ASPGPGGQKV YRDCSCVPQN FSSGFGHATA ENSP00000217159/1-722 VCGSDGLMYF SLCHAGCPAA TETNVDGQKV YRDCSCIPQN LSSGFGHATA ENSBTAP00000021795/1-718 VCGSDGLMYY SPCYAGCLEM AVSSPGGQKV YRDCSCVPQN FSSGFGHATA bmy_16429T0/1-789 VCGPDGLMYY SPCHAGCPEA ASPGPGGQQV YRDCSCVPQN FSSGFGHATA BACU011253/1-447 VCGPDGLMYY SPCHAGCPEA ASPGPGGQKV ---------- ---------- 601 650 ENSTTRP00000001658/1-479 GKCTSTCQRK PLLLLFIFVV IIFTFLSSIP ALTATLRCVC DQQRSFALG- ENSP00000217159/1-722 GKCTSTCQRK PLLLVFIFVV IFFTFLSSIP ALTATLRCVR DPQRSFALG- ENSBTAP00000021795/1-718 GKCTSTCQRK PLLLVFIFVV IVFTFLSSIP ALTATLRCVC DQQRSFALG- bmy_16429T0/1-789 GKCTSTCQRK PLLLVFIFVV IIFTFLSSIP ALTATLR-LR QSRRPWGISR BACU011253/1-447 ------CLRP AAIL------ ---------- ---------- ---------- 651 700 ENSTTRP00000001658/1-479 ---------- ---------I QWIVVRTL-- ---------- ---------- ENSP00000217159/1-722 ---------- ---------I QWIVVRIL-- ---------- ---------- ENSBTAP00000021795/1-718 ---------- ---------I QWIVVRTL-- ---------- ---------- bmy_16429T0/1-789 HGGKPPEKGT LSPLCTRCEH QWPKSRSLEP AWSGSLDDPL GGVRVLSVPL BACU011253/1-447 ---------- ---------- -----RTR-- ---------- ---------- 701 750 ENSTTRP00000001658/1-479 --GGIPGPIA FGWVIDKACL LWQTQCGQQG SCFVYQNSAM SQYLLIAGLS ENSP00000217159/1-722 --GGIPGPIA FGWVIDKACL LWQDQCGQQG SCLVYQNSAM SRYILIMGLL ENSBTAP00000021795/1-718 --GSIPGPIA FGWVIDKACL LWQDQCGQQG SCFVYQNSAM SWYLLIAGLG bmy_16429T0/1-789 SAGGIPGPIA FGWVIDKACL LWQNQCGQQG SCFVYENSAM SQYLLIAGLA BACU011253/1-447 ------DPVD RG-------- ---------- ---------- ---------- 751 800 ENSTTRP00000001658/1-479 YKVLGFVFFT TACFLYKPLS GSSDGLEASL PSQSSASDNP TD-------S ENSP00000217159/1-722 YKVLGVLFFA IACFLYKPLS ESSDGLETCL PSQSSAPDSA TD-------S ENSBTAP00000021795/1-718 YKVLGSIFFA IACFLYKSPP GSSDGLEASL PSQSSASDNP SDLQEAPSAL bmy_16429T0/1-789 YKVLGFIFFT TACFLYKPLS GSSDGLEASL PSQSSASDNP MDLQEAPSAL BACU011253/1-447 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000001658/1-479 QIQSDI ENSP00000217159/1-722 QLQSSV ENSBTAP00000021795/1-718 QIQSDI bmy_16429T0/1-789 QIQSNI BACU011253/1-447 ------