KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:22 2014 Check: 00 .. Name: ENSTTRP00000001105/1-442 Len: 540 Check: 1093 Weight: 1.00 Name: ENSP00000290552/1-446 Len: 540 Check: 9802 Weight: 1.00 Name: BACU001860/1-355 Len: 540 Check: 169 Weight: 1.00 Name: bmy_02339T0/1-476 Len: 540 Check: 6787 Weight: 1.00 Name: ENSBTAP00000021815/1-445 Len: 540 Check: 2381 Weight: 1.00 // 1 50 ENSTTRP00000001105/1-442 MSFPHFGHPY GSASQFLVSA SSNATCCESA PRSVPDVASG SIPAAALCFA ENSP00000290552/1-446 MSFPHFGHPY RGASQFLASA SSSTTCCEST QRSVSDVASG STPAPALCCA BACU001860/1-355 ---------- ---------- ---------- ---------- ---------- bmy_02339T0/1-476 MSFPHFGHPY GSASQFLVSA SSNATCCESA PRSVPDVASG STPAAALCFA ENSBTAP00000021815/1-445 MSFPHFGHPY GSASQFLVSA SSSATCCESA PRSVPDVASG STPAAALCCA 51 100 ENSTTRP00000001105/1-442 PYDSRLLGSA RPELGAALGI YGAPYSAAAA AQSYAGYLPY SPEPPTLYGA ENSP00000290552/1-446 PYDSRLLGSA RPELGAALGI YGAPYAAAAA AQSYPGYLPY SPEPPSLYGA BACU001860/1-355 ---------- ---------- ---------- ---------- ---------- bmy_02339T0/1-476 PYDSRLLGSA RPELGAALGI YGHPYSAAAA AQSYAGYLPY SPEPPTLYGA ENSBTAP00000021815/1-445 PYDSRLLGSA RPELGAALGI YGAPYSAAAA AQSYPGYLPY SPEPPGLYGA 101 150 ENSTTRP00000001105/1-442 LNPQYEFNDD A-NFTPGLAQ PAYYY---EQ SGQYQYDRYG SVELGGAGRR ENSP00000290552/1-446 LNPQYEFKEA AGSFTSSLAQ PGAYYPYERT LGQYQYERYG AVELSGAGRR BACU001860/1-355 ---------- ---------- ---------- ---------- ---------- bmy_02339T0/1-476 L-------EA AGNFTPGLAQ PAAYYPYEQS LGQYQYDRYG AVELGGTGRR ENSBTAP00000021815/1-445 LNPQYEFKEA AGNFTSSLAQ PGAYYPYEPT LGQYQYERYG AVELSGAGRR 151 200 ENSTTRP00000001105/1-442 KNATRETTST LKAWLNEHRK NPYPTKGEKI MLAIITKMTL TQVSTWFANA ENSP00000290552/1-446 KNATRETTST LKAWLNEHRK NPYPTKGEKI MLAIITKMTL TQVSTWFANA BACU001860/1-355 ---------- ---------- ---------- MLAIITKMTL TQVSTWFANA bmy_02339T0/1-476 KNATRETTST LKAWLNEHRK NPYPTKGEKI MLAIITKMTL TQVSTWFANA ENSBTAP00000021815/1-445 KNATRETTST LKAWLNEHRK NPYPTKGEKI MLAIITKMTL TQVSTWFANA 201 250 ENSTTRP00000001105/1-442 RRRLKKENKM TWAPKNKGGE ERKEEGGAEE LLGCLNGDTK XXXXXXXXXX ENSP00000290552/1-446 RRRLKKENKM TWAPKNKGGE ERKAEGGEED SLGCLTADTK EVTASQEARG BACU001860/1-355 RRRLKKENKM TWAPKNKGGE ERKEEGGAEE LLGCLNGDTK DVSASQEARG bmy_02339T0/1-476 RRRLKKENKM TWAPKNKGGE ERKEEGGAEE LLGCLN---- DVSASQEARG ENSBTAP00000021815/1-445 RRRLKKENKM TWAPKNKGGE ERKEEGGAEE LLGCLNGDTK DVTAGQEPRG 251 300 ENSTTRP00000001105/1-442 XXXXXXXXX- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000290552/1-446 LRLSDLEDLE EEEEEEEEAE DEEVVATAGD RLTEFRKGAQ SLPGP-CAAA BACU001860/1-355 --LSDLEDL- -EEEEEEEAD EEEAVATATD RLAELHQDTQ SPPAAQGAAA bmy_02339T0/1-476 --LSDLEDL- -EEEEEEEAD EEEAVATATD RLAELHZDTQ SLPAAQCAAA ENSBTAP00000021815/1-445 LRLSDLEDL- --EEEEEEAD EEEAVATATD RLAEFHKDTQ PLPAAQCAAA 301 350 ENSTTRP00000001105/1-442 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000290552/1-446 REGRLERREC GLAAPRFSFN DPSGSEEADF LSAETGSPRL TMHYPCLEK- BACU001860/1-355 REGRLERREC SLAAPRFSFT EPPRSGETDF LRAEPGGRTL TMHYPRSEK- bmy_02339T0/1-476 REGRLERREC SLAAPRFSFT EPPRSGETDF LRAEPGGPTL TMHYPRSEK- ENSBTAP00000021815/1-445 REGRQERREC SLAAPRFLFT EPPRSGEADF LRAEPGGPTL TMHYPCSEKP 351 400 ENSTTRP00000001105/1-442 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000290552/1-446 PRIWSLAHTA TASAVEGAPP ARPRPRSPEC RMIPGQPPAS ARRLSVPRDS BACU001860/1-355 PRIWSLAHTA AASGVEGAPP NLSRPRSPEC HLIPGQPPGP GARPAVPRDS bmy_02339T0/1-476 PRIWSLAHTA AASGVEGAPP NLSRPRSPEC HLIPGQPPGP GARPAVPRDS ENSBTAP00000021815/1-445 PRIWSLAHTA AASVVEGAPP NLPQPRSPEH HLIPGQPPGP GARPAVPRDS 401 450 ENSTTRP00000001105/1-442 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXG-- ENSP00000290552/1-446 ACDESSCIPK AFGNPKFALQ GLPLNCAPCP RRSEPVVQCQ YPSGAEAG-- BACU001860/1-355 ACEESSRVAK AFGNPSFAQQ GLPLDCAPCP RRRAPAVRCQ YQSGAEDSPP bmy_02339T0/1-476 ACEESSRVAK AFGNPSFAQQ GLPLDCAPCP RRRAPAVQCQ YQSGAEGSGP ENSBTAP00000021815/1-445 ACQESPRVAK AFGNPTFALQ GLPLNCAPCP RRREPAVRCQ YPSGAEAG-- 451 500 ENSTTRP00000001105/1-442 ---------- ---------- ---------- ---------- ---------- ENSP00000290552/1-446 ---------- ---------- ---------- ---------- ---------- BACU001860/1-355 PSSLPLIHEP PSTEETLIHS FTSVAGPPAM QRSVQRCQLR LSQTELQMPW bmy_02339T0/1-476 PTALGVSVQK TPSPDTHIH- -------PPT PRVPSRCTLS LPLQHAQVQT ENSBTAP00000021815/1-445 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000001105/1-442 ---------- ---------- ---------- ---------- ENSP00000290552/1-446 ---------- ---------- ---------- ---------- BACU001860/1-355 SFGNSQSYPS KIELYSSMKI KGYIIKIRNE NISMPKCKQN bmy_02339T0/1-476 ---------- ---------- ---------- ---------- ENSBTAP00000021815/1-445 ---------- ---------- ---------- ----------