KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:23 2014 Check: 00 .. Name: ENSP00000418268/1-875 Len: 961 Check: 7046 Weight: 1.00 Name: ENSTTRP00000010536/1-872 Len: 961 Check: 9293 Weight: 1.00 Name: ENSBTAP00000021822/1-863 Len: 961 Check: 3383 Weight: 1.00 Name: bmy_09880T0/1-883 Len: 961 Check: 2119 Weight: 1.00 Name: BACU013807/1-943 Len: 961 Check: 8961 Weight: 1.00 // 1 50 ENSP00000418268/1-875 ---------- ---------- ---------- -MDEEEDNLS LLTALLEENE ENSTTRP00000010536/1-872 ---------- ---------- ---------- -MDVEEDDLS LLTALLEENE ENSBTAP00000021822/1-863 ---------- ---------- ---------- ---GEEDDLS LLTALLEENE bmy_09880T0/1-883 ---------- ---------- ---------- ----EEDDLS LLTALLEENE BACU013807/1-943 MRRLLCVKRK RKRASELDDT VGFLSFLFLL FPIGEEDDLS LLTTLLEENE 51 100 ENSP00000418268/1-875 SALDCNSEEN NFLTRENGEP DAFDELFDAD GDGESYTEEA DDGETGETRD ENSTTRP00000010536/1-872 SALDCNSEES QPLTQQDGEP DAFDELFDAD GDGESYTEEA DEGEVEKAED ENSBTAP00000021822/1-863 SALGCNSEES QPLTQEDGEP DSYDELFDAD GDGESYTEET DEGEVEKAEN bmy_09880T0/1-883 SALDCNSEES QSLTQKDGEP DAFDELFDAD GDGESYTEEA DEGEVEKAED BACU013807/1-943 SALDCNSEES QPLTQEDGEP DAFDELFDAD GDGESYTEEA DEGEVEKAED 101 150 ENSP00000418268/1-875 EKENLATLFG DMEDLTDEEE VPASQSTENR VLPAPAPRRE KTNEELQEEL ENSTTRP00000010536/1-872 QKENLDALFG DMDDLADEEE APTSRSTHSR VLPGPAPSQG KTNQELQDEL ENSBTAP00000021822/1-863 QKENLATLFG DMGDLTDEEE APTSQSTKER VVPAPGPSQG ----ALEHEL bmy_09880T0/1-883 QKENLDALFG DMEDLTDEEE APTSQSTNNR ALPAPAPSQG KTHQELQDEL BACU013807/1-943 QKENLDALFG DMEDLTDEEE APTSQSANHR ALPAPVPSQG KTHQELQDEL 151 200 ENSP00000418268/1-875 RNLQEQMKAL QEQLKVTTIK QTASPARLQK SPVEKSPRPP LKERRVQRIQ ENSTTRP00000010536/1-872 RKLQEQMKSL QEQLKLTTIK QPASPARLHK TPVDKSPRPP LKEKKVQRIQ ENSBTAP00000021822/1-863 RKLQEQMKSL QEQLKLATIK QPASPALSRK TP-DKSPRPP LKEKK---IQ bmy_09880T0/1-883 RKVQEQMKSL QEQLKLATIK QPASPARLHK TP-DKSPRPP LKEKKVQRIQ BACU013807/1-943 RKLQEQMKSL QEQLKLTTIK QPASPARLHK TPVDKSPRPP LKEKKVQRIQ 201 250 ENSP00000418268/1-875 ESTCFSAELD VPALPRTKRV ARTPKASPP- ---------- ------DPKS ENSTTRP00000010536/1-872 ESSRFSAELD VPTLPKPKRV ARTPKVSPA- ---------- ------EPQS ENSBTAP00000021822/1-863 ESLCFSAELD VPTLPKPKRV ARTPKVSPA- ---------- ------EPQC bmy_09880T0/1-883 ESSCFSAELD VPTLPKPKRV ARTPKVSPAG VVLEASLVSH CLGSVCKPQS BACU013807/1-943 ESSCFSAELD VPTLPKPKRV ARTPKVSPA- ---------- ------EPQS 251 300 ENSP00000418268/1-875 SSSRMTSAPS QPLQTISRNK PSGITRGQIV GTPGSSGETT QPICVEAFSG ENSTTRP00000010536/1-872 SSFKMTSAPS QPLRTTPGNK PGGMTRDQSA GTPRSSGETT QTVSVEAFSG ENSBTAP00000021822/1-863 SPLKMTSVPS QPLRTTPGNK PGGVTRDQSA GTPRSSGEMA QEVSVEAFSG bmy_09880T0/1-883 SSFRMTSAPS QPLRTTPGNK PGGMTRDQSA GTPRSSGETT QTVSVEAFSG BACU013807/1-943 SSFRMTSAPS QPLRTTPGNK PAGMTRDQGA GTPRSSGETT QTVSVEAFSG 301 350 ENSP00000418268/1-875 LRLRRPRVSS TEMNKKMTGR KLIRLSQIKE KMAREKLEEI DWVTFGVILK ENSTTRP00000010536/1-872 LRLRKPRVSS TEMNKKMTGR RLIRLSQLKE KMASEKLEEI DWVTFGVILK ENSBTAP00000021822/1-863 LRLRKPRVSS TEMNKKMIGR KLIRLSQLKE KMASEKLEEI DWVTFGVILK bmy_09880T0/1-883 LRLRKPRVSS TEMNKKMTGR RLIRLSQLKE KMASEKLEEI DWVTFGVILK BACU013807/1-943 LRLRKPRVSS TEMNKKMTGR RLIRLSQLKE KMASEKLEEI DWVTFGVILK 351 400 ENSP00000418268/1-875 KVTPQSVNS- ---------- ---------- ---------- -------GKT ENSTTRP00000010536/1-872 KITPQSSNS- ---------- ---------- ---------- -------GKT ENSBTAP00000021822/1-863 KITPQSSNS- ---------- ---------- ---------- -------GKT bmy_09880T0/1-883 KITPQSSNS- ---------- ---------- ---------- -------GKT BACU013807/1-943 KITPQSSNSV SHFIDFSDVS SQIDSGDSYV LDLLPRTRQY FILKSLLGKT 401 450 ENSP00000418268/1-875 FSIWKLNDLR DLTQCVSLFL FGEVHKALWK TEQGTVVGIL NANPMKPKDG ENSTTRP00000010536/1-872 FSIWRLNDLR DLTRYVSLFL FGEVHKELWK TEQGTVVGLL NANPMKPKDG ENSBTAP00000021822/1-863 FSIWRLNDLR DLTRCVSLFL FGEVHKELWK TEQGSVIGLL NANPMKPKDG bmy_09880T0/1-883 FSIWRLNDLR DLTRYVSLFL FGEVHKELWK TEQGTVIGLL NANPMKPKDG BACU013807/1-943 FSIWRLNDLR DLTRYVSLFL FGEVHKELWK TEQGTVIGLL NANPMKPKDG 451 500 ENSP00000418268/1-875 SEEVCLSIDH PQKVLIMGEA LDLGTCKAKK KNGEPCTQTV NLRDCEYCQY ENSTTRP00000010536/1-872 SEEVCLSIDH PQKVLIMGEA LDLGTCKAKK KNGEPCTQTV NLNDC-YCQY ENSBTAP00000021822/1-863 SEEMCLSIDH PQKILIMGEA LDLGTCKAKK KNGEPCTQIV NLNDCEYCQY bmy_09880T0/1-883 SEDVCLSIDH PQKILIMGEA LDLGTCKAKK KNGEPCTQTV NLNDCEYCQY BACU013807/1-943 SEDVCLSIDH PQKILIMGEA LDLGTCKAKK KNGEPCTQTV NLNDCEYCQY 501 550 ENSP00000418268/1-875 HVQAQYKKLS AKRADLQSTF SGGRIPKKFA RRGTSLKERL CQDGFYYGGV ENSTTRP00000010536/1-872 HIQAQY-RLS ARRADLQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000021822/1-863 HIQAQYKRLS ARRADLQSTF SGGRIPKKFA CKGISLRERL CQDGFYYGGI bmy_09880T0/1-883 HIQAQYKKLS ARRADLQSTF SGGRIPKKFA RKGISLKERL CQDGFYYGGV BACU013807/1-943 HIQAQYKKLS ARRADLQSTF SGGRIPKKFA RKGISLKERL CQDGFYYGGV 551 600 ENSP00000418268/1-875 SSASYAASIA AAVAPKKKIQ TTLSNLVVKG TNLIIQETRQ KLGIPQKSLS ENSTTRP00000010536/1-872 XXXXXXXXXA AAVAPKKKIQ TTLTNLVVKG TDLILQETQQ KLGVRQKSLS ENSBTAP00000021822/1-863 SSASYAASIA AAVAPKKKIQ TTLSNLVVKG TDLILQETQQ KLGIPQKSLS bmy_09880T0/1-883 SSASYAASIA AAVAPKKKIQ TTLTNLVVKG ADLILQETQQ KLGIPQKSLS BACU013807/1-943 SSASYAASIA AAVAPKKKIQ TTLTNLVVKG ADLILQETQQ KLGIPQKSLS 601 650 ENSP00000418268/1-875 CSEEFKELMD LPTCGARNLK QHLAKATASG IMGSPKPAIK SISASALLKQ ENSTTRP00000010536/1-872 CSEEFRELMD LPTSGARNLK HHLAKVKSSG IMGSPKPAFQ SISASAFLKQ ENSBTAP00000021822/1-863 CSEEFRELMD LPTSGARNLK HHLAKAKSSG IVGSLKPAFQ SISASALLKQ bmy_09880T0/1-883 CSEEFRELMD LPTSGARNLK HHLAKVKSSG IMGSPKPAFQ SISASAFLKQ BACU013807/1-943 CSEEFRELMD LPTSGARNLK HHLAKVKSSG VMGSPKPAFQ SISASALLKQ 651 700 ENSP00000418268/1-875 QKQRMLEMRR RKSEEIQKRF LQSSSEVESP AVPSSSRQPP AQPPRTGSEF ENSTTRP00000010536/1-872 QKQHMLELRK KKSEEIQKRF LQSASEVESP AVPSSSRQPP SWSPPAGAEF ENSBTAP00000021822/1-863 QKQHMLEMRK KKSEEIQKRF LQSSSEIKSP AVPSSSQQPP CRSPPMGAEF bmy_09880T0/1-883 QKQHMLEMRK KKSEEIQKR- ---ASEVESP AVPSSSQQPP SWSPPTGAEF BACU013807/1-943 QKQHMLEMRK KKSEEIQKRF LQSASEVESP AVPSSSRQPP SWSPPTGAEF 701 750 ENSP00000418268/1-875 PRLEGAPATM TPKLGRGVLE GDDVLFYDES PPPRPKLSAL AEAKKLAAIT ENSTTRP00000010536/1-872 PKLKGTPAIQ MPKLGRDISE GDDVLFFDES PPPRPKLNKL AEAKKLAAIT ENSBTAP00000021822/1-863 PKMKGTPTTQ MPKLGRGISE GDDVLFFDES PPPRPKLNAL AEAKKLAAIT bmy_09880T0/1-883 PKLKGAPAIQ MPKLGRDISE GDDVLFFDES PPPRPKLSVL AEAKKLAAIT BACU013807/1-943 PKLKGAPAPQ MPKLGRDISE GDDVLFFDES PPPRPKLSVL AEAKKLAAIT 751 800 ENSP00000418268/1-875 KLRAKGQVLT KTNPNSIKKK QKDPQDILEV KERVEKNTMF SSQAEDELEP ENSTTRP00000010536/1-872 KLRVKGQILT KTDPNSI-KK LKEPQDVLEV KERVEKNNTF SPQAEDELEP ENSBTAP00000021822/1-863 KLRSKGRILT KTDPNSI-KK LKEPQDVLEV KERVEKNSTF SPQAEDELEP bmy_09880T0/1-883 KLRAKGQILT KTDPNSI-KK LKEPQDVLEV KERVEKNNTF SPQAEDELEP BACU013807/1-943 KLRAKGQILT KTDPNSI-KK LKEPQDVLEV KERVEKNNTF SPQAEDELEP 801 850 ENSP00000418268/1-875 ARKKRREQLA YLESEEFQKI LKAKSKHTGI LKEAEAEMQE RYFEPLVKKE ENSTTRP00000010536/1-872 ARKKRREQLA YLESEDFQKI LKAKSRHTGI LKEAEAELQE HYFEPLVKKE ENSBTAP00000021822/1-863 AKKKRREQLA YLESEEFQTI LKAKSRHTGI LKEAEAELQE RYFEPLVKKE bmy_09880T0/1-883 ARKKRREQLA YLESEDFQTI LKAKSRHTGI LKEAEAELQE HYFEPLVKKE BACU013807/1-943 ARKKRREQLA YLESEDFQTI LKAKSRHTGI LKEAEAELQE HYFEPLVKKE 851 900 ENSP00000418268/1-875 QMEEKMRNIR EVKCRVVTCK TCAYTHFKLL ETCVSEQHEY HWHDGVKRFF ENSTTRP00000010536/1-872 QIEEKMRNTR EVKCRVVTCR TCAYTHFKPL ETCVSEQHNY HWHDSVKRFF ENSBTAP00000021822/1-863 QMEEKMRNTR EVKCRVVTCK TCAYTHFKPL ETCVSEQHDY HWHDGVKRFF bmy_09880T0/1-883 QIEEKMRNTR EVKCRVVTCR TCAYTHFKPL ETCISEQHSY QWHDGVKRFF BACU013807/1-943 QIEEKMRNTR EVKCRVVTCR TCAYTHFKPL ETCVSEQHNY HWHDSVKRFF 901 950 ENSP00000418268/1-875 KCPCGNRSIS LDRLPNKHCS NCGLYKWERD GMLKEKTGPK IGGETLLPRG ENSTTRP00000010536/1-872 KCPCGNRTVS LGRLPQKHCS NCGLFKWERD GMLKEKTGPK IGGETLLPRG ENSBTAP00000021822/1-863 KCACGNRTIS LDRLPQKHCS NCGLFKWERD GMLKEKTGPK IGGETLLPRG bmy_09880T0/1-883 KCPCGNRSVS LDRLPQKHCS XCGLFKWERD GMLKEKTGPK IGGETLLPRG BACU013807/1-943 KCPCGNRSVS LDRLPQKHCS NCGLFKWERD GMLKEKTGPK IGGETLLPRG 951 1000 ENSP00000418268/1-875 EEHAKFLNSL K ENSTTRP00000010536/1-872 EEHAKFLNSL K ENSBTAP00000021822/1-863 EEHAKFLNSL - bmy_09880T0/1-883 EEHSKFLNSL K BACU013807/1-943 EEHAKFLNSL K