KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:15:26 2014 Check: 00 ..
Name: ENSP00000337816/1-562 Len: 583 Check: 2153 Weight: 1.00
Name: ENSBTAP00000021843/1-582 Len: 583 Check: 188 Weight: 1.00
Name: ENSTTRP00000003775/1-552 Len: 583 Check: 7224 Weight: 1.00
Name: bmy_02751T0/1-492 Len: 583 Check: 3644 Weight: 1.00
Name: BACU009180/1-544 Len: 583 Check: 3874 Weight: 1.00
//
1 50
ENSP00000337816/1-562 MRLRLR---- ---------- ---LLALLLL LLAPPARAPK PSAQDVSLGV
ENSBTAP00000021843/1-582 RRPRARGSPS SPSPPRPRPA PPGLLALLLP LLQPPARARE PSAQDVSLGV
ENSTTRP00000003775/1-552 ---MLR---- ---------- ---LLALLLP LLPQPARARE PSAQDVSLGV
bmy_02751T0/1-492 ---MLR---- ---------- ---LLALLLP LLPPPARARE PSAQDVSLGV
BACU009180/1-544 ---MLR---- ---------- ---LLALLLP LLPPLARARE PSAQDVSLGV
51 100
ENSP00000337816/1-562 DWLTRYGYLP PPHPAQAQLQ SPEKLRDAIK VMQRFAGLPE TGRMDPGTVA
ENSBTAP00000021843/1-582 DWLTRYGYLP PPHPAQAQLQ SPAKLRDAIK VMQRFAGLPE TGVLDPLTVA
ENSTTRP00000003775/1-552 DWLTRYGYLP PPHPAQAQLQ SPAKLRDAIK VMQRFAGLPE TGVLDPVTVA
bmy_02751T0/1-492 DWLTRYGYLP PPHPAQAQLQ SPAKLRDAIK VMQRFAGLPE TGVL----VA
BACU009180/1-544 DWLTRYGYLP PPHPAQAQLQ SPAKLRDAIK VMQRFA---- ----DPVTVA
101 150
ENSP00000337816/1-562 TMRKPRCSLP DVLGVAGLVR RRRRYALSGS VWKKRTLTWR VRSFPQSSQL
ENSBTAP00000021843/1-582 TMHKPRCSLP DVLGAAGLVR RRRRYALSGS VWKKRTLTWR VNSFPQGSGL
ENSTTRP00000003775/1-552 TMHKPRCSLP DVLGAAGLVR RRRRYALSGT VWKKRTLTWR VNSFPQGSVL
bmy_02751T0/1-492 TMHKPRCSLP DVLGAAGLVR RRRRYALSGS VWKKRTLTWR VNSFPQGSVL
BACU009180/1-544 TMHKPRCSLP DVLGAAGLVR RRRRYALSGS VWKKRTLTWR VNSFPQGSVL
151 200
ENSP00000337816/1-562 SQETVRVLMS YALMAWGMES GLTFHEVDSP QGQEPDILID FARAFHQDSY
ENSBTAP00000021843/1-582 SQETVRTLMH HALTTWGAES DLRFQEVGSQ GPTEPDILID FARAYHQDSY
ENSTTRP00000003775/1-552 SQETVRTLMH HALTTWGVES GLEFQEVGSQ DPMEPDILID FARAYHQDSY
bmy_02751T0/1-492 SQETVRTLMH HALTTWGVES GLEFQEVGSQ GLMEPDILID FARAYHQDSY
BACU009180/1-544 SQETVRTLMH HALTTWGVES GLEFQEVGSQ GPMEPDILID FARAYHQDSY
201 250
ENSP00000337816/1-562 PFDGLGGTLA HAFFPGEHPI SGDTHFDDEE TWTFGSKDGE GTDLFAVAVH
ENSBTAP00000021843/1-582 PFDGQGGTLA HAFFPGEHPI SGDTHFDDEE TWTFGSKDGE GTDLFAVAVH
ENSTTRP00000003775/1-552 PFDGQGGTLA HAFFPGEHSI SGDTHFDDEE IWTFGSKDGE GTDLFAVAVH
bmy_02751T0/1-492 PFDGQGGTLA HAFFPGEHSI SGDTHFDDEE TWTFGSKDGE GTDLFAVAVH
BACU009180/1-544 PFDGQGGTLA HAFFPGEHSI SGDTHFDDEE TWTFGSKDGE GTDLFAVAVH
251 300
ENSP00000337816/1-562 EFGHALGLGH SSAPNSIMRP FYQGPVGDPD KYRLSQDDRD GLQQLY----
ENSBTAP00000021843/1-582 EFGHALGLGH SSAPDSIMRP FYQGPVGNPA EYRLSQDDRE GLQQLYGTAG
ENSTTRP00000003775/1-552 EFGHALGLGH SSAANSIMRP FYQGPVGNPT EYRLSQDDLE GLQQLY----
bmy_02751T0/1-492 EFGHALGLGH SSAPDSIMRP FYQGPVGNPT EYRLSQDDLE GLQQLY----
BACU009180/1-544 EFGHALGLGH SSAPDSIMRP FYQGPVGNPT EYRLSQDDLE GLQQLY----
301 350
ENSP00000337816/1-562 GKAPQTPYDK PTRKPLAPPP QPPASPTHSP SFPIPDRCEG NFDAIANIRG
ENSBTAP00000021843/1-582 GRAPQTPYDK PTRKPLAPPP PPPALPPDST PQPLPDRCDG NFDAIANIRG
ENSTTRP00000003775/1-552 GKAAQTPLDK PTRKPLAPPP PPPALPPDRP SQPVPDRCDG HFDAIANIRG
bmy_02751T0/1-492 ---------- ---------- ---------- ---------- ----------
BACU009180/1-544 GKAPQTPLDK PTRKPLAPPP PPPALPPDSP SQPVPDRCGG HFDAIANIRG
351 400
ENSP00000337816/1-562 ETFFFKGPWF WRLQPSGQLV SPRPARLHRF WEGLPAQVRV VQAAYARHRD
ENSBTAP00000021843/1-582 ETFFFKGPWF WRLQPSGQLV SPRPARLHRF WEGLPTQVKV IQAAYARHPD
ENSTTRP00000003775/1-552 ETFFFKGPWF WRLQPSGQLV SPRPARLHRF WEGLPAQVKV IQAAYARPPD
bmy_02751T0/1-492 ------GPWF WRLQPSGQLV SPRPARLHRF WEGLPAQVKV IQAAYARHPD
BACU009180/1-544 ETFFFKGPWF WRLQPSGQLV SPRPARLHRF WEGLPAQVKV IQAAYARHPD
401 450
ENSP00000337816/1-562 GRILLFSGPQ FWVFQDRQLE GGARPLTELG LPPGEEVDAV FSWPQNGKTY
ENSBTAP00000021843/1-582 GRILLFSGPQ FWSFQDRLLE GAARPLTELG LPPGTEVDAV FSWPLNGKTY
ENSTTRP00000003775/1-552 GRILLFSGPQ FWVFQDRQLE GAARPLTELG LPAGEEVDAV FSWPLNGKTY
bmy_02751T0/1-492 GRILLFSGPQ FWVFQDRQLE GAARPLTELG LPPGEEVDAV FSWPLNGKTY
BACU009180/1-544 GRILLFSGPQ FWVFQDRQLE GAARPLTELG LPPGEEVDAV FSWPLNGKTY
451 500
ENSP00000337816/1-562 LVRGRQYWRY DEAAARPDPG YPRDLSLWEG APPSPDDVTV SNAGDTYFFK
ENSBTAP00000021843/1-582 LIRGRQYWRY DEAAARPDPG YPRDLSLWEG APSAPDDVTV SNTGDTYFFK
ENSTTRP00000003775/1-552 LIRGRRYWRY DEAAARPDPG YPRDLSLWEG APHAPDDVTV SNTGDTYFFK
bmy_02751T0/1-492 LIRGRRYWRY DEAAARPDPG YPRDLSLWEG APHAPDDVTV SNTGDTYFFK
BACU009180/1-544 LIRGRRYWRY DEAAARPDPG YPRDLSLWEG APHAPDDVTV SNTGDTYFFK
501 550
ENSP00000337816/1-562 GAHYWRFPKN SIKTEPDAPQ PMGPNWLDCP APSSGPRAPR PPKATPVSET
ENSBTAP00000021843/1-582 GLHYWRFPKG SIKAEPDSPQ PMGPKFLDCP APTVGPRAPR PPRATLKAGD
ENSTTRP00000003775/1-552 GAHYWRFPKG SVKAEQDSPQ PMGPKFLDCS -------APR PPKATLKPGA
bmy_02751T0/1-492 GAHYWRFRKG SVKAEQDSPQ PMGPKFLDCP -------APR PPKATLKPGA
BACU009180/1-544 GAHYWRFRKG SVKAEQDSPQ PMGPKFLDCP -------APR PPKATLKPGA
551 600
ENSP00000337816/1-562 CDCQCELNQA AGRWPAPIPL LLLPLLVGGV ASR
ENSBTAP00000021843/1-582 CDCQCGISRA AGRPSV-LLL PLLSLLVGGL ASP
ENSTTRP00000003775/1-552 CDCQCEISQA AGRPSVAPLL PLLPLLVAGF ASR
bmy_02751T0/1-492 CDCQCEISQA AGRPSVPPLL SLLPLLVGGF ASR
BACU009180/1-544 CDCQCEISQA AGRLSLPPLL PLLPLLVGGF ASR