KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:28 2014 Check: 00 .. Name: ENSP00000381378/1-859 Len: 871 Check: 6351 Weight: 1.00 Name: ENSBTAP00000021852/1-861 Len: 871 Check: 2001 Weight: 1.00 Name: ENSTTRP00000011526/1-861 Len: 871 Check: 4263 Weight: 1.00 Name: bmy_01282T0/1-854 Len: 871 Check: 1888 Weight: 1.00 Name: BACU009374/1-571 Len: 871 Check: 142 Weight: 1.00 // 1 50 ENSP00000381378/1-859 MTSKQAMSSN EQERLLCYNG EVLVFQLSKG NFADKEPTKT PILHVRRMVF ENSBTAP00000021852/1-861 ------MSST EQERFCCYNG EVLIFHLSEG NFVDEGPKKT PVLHVRRMVF ENSTTRP00000011526/1-861 FTSKQAMSSN EQERLFCYNG EVLVFRLSKG NFVDEGPTKT TVLHVRRMVF bmy_01282T0/1-854 ------MSSN EQERLFCYNG EVLVFRLTKG NFVDEGPTKT PVLHVRRMVF BACU009374/1-571 ------MSSN EQERLFCYNG EVLVFRLSKG NFVDEGPTKT PVLHVRRMVF 51 100 ENSP00000381378/1-859 DRGTKVFVQK STGFFTIKEE NSHLKIMCCN CVSDFRTGIN LPYIVIEKNK ENSBTAP00000021852/1-861 GRGPEGFVQK STGFFSIKEE YSHLKIMCCD CVSDFRTGIN LPYVMIQCIK ENSTTRP00000011526/1-861 DRGTGVFVQK STGFFSIKEE YSHLRIMGCD CVSDFRTGIN LPYIMIQCIK bmy_01282T0/1-854 DRGTGVFVQK STGFFSIKEE YSHLKIMGCD CVSDFRTGIN LPYIMIQCIK BACU009374/1-571 DRGTGVFVQK STGFFSIKEE YSHLKIMGCD CVSDFRTGIN LPYIMIQCIK 101 150 ENSP00000381378/1-859 KNNVFEYFLL ILHSTNKFEM RLSFKLGYEM KDGLRVLNGP LILWRHVKAF ENSBTAP00000021852/1-861 EENIFKYFLL FLHGTNKFEK CLSFRLGYEL KDSIRVLNGP LVLWRHGQTF ENSTTRP00000011526/1-861 KSNVFRYFLL FLHSTNKFEK RLSFSLHCEL KDSIRVLNGP LVLWRHIQTF bmy_01282T0/1-854 ETNIFRYFLL FLHSTNKFEK RLSFRLLYEL KDSIRVLNGP LVLWRHVQTL BACU009374/1-571 ESNIFRYFLL FLHSTNKFEK RLSFRLLYEL KDSIRVLNGP LVLWRHVQTL 151 200 ENSP00000381378/1-859 FFISSQTGKV VSVSGNFSSI QWAGEIENLG MVLLGLKECC LSEEECTQEP ENSBTAP00000021852/1-861 FYISSQTGKV VTVPMNFSSV EWAGEIENLG MVLLGPKRCY LSAEGCTPKP ENSTTRP00000011526/1-861 FYISSQTGKV VTMSIKFSSI EWAGEIENVG MVLLGRKRCN LSEEGCTPQP bmy_01282T0/1-854 FYISSQTGKV VTVSIKFSSI EWAGEIENVG MVLLGRKTCY LSEEGCTPQP BACU009374/1-571 FYISSQTGKV VTVSIKFSSI EWAGEIENVG MVLLGRKTCY LPEEGCTPQP 201 250 ENSP00000381378/1-859 SKSDYAIWNT KFCVYSLESQ EVLSDIYIIP PAYSSVVTYV HICATEIIKN ENSBTAP00000021852/1-861 SKSDYATWNT HFCAYSLERA EIISDTYIIP PAYTSMITFV HVYSTEIVND ENSTTRP00000011526/1-861 SKSDYATWNT QFCVYSLERE EVISDTYIIP PVYTSVITCV HVCATEIVNN bmy_01282T0/1-854 SKSDYATWNT QFCVYSLERG EVISDTYIIP PAYTSVITCV HVCATEIVNN BACU009374/1-571 SKSDYATWNT QFCVYSLERG EVINETYIIP PAYNSVIACV HVCATEIVNN 251 300 ENSP00000381378/1-859 QLRISLIALT RKNQLISFQN GTPKNVCQLP FGDPCAVQLM DSGGGNLFFV ENSBTAP00000021852/1-861 QLRMSLIALT QKNQLISFLN GTPTSVCQLP FGDPCAVQLV DSGEEELLFI ENSTTRP00000011526/1-861 RLRMSLIALT QKNQLISFQD GTPKSVCQLP FGDPCAVQLM DSGGGDLLFV bmy_01282T0/1-854 QLRMSLIALT QKNQLISFQN GTPKSVCQLP FGDPCAVQLM DSGGGDLLFV BACU009374/1-571 QLRMSLIALT QKNQLISFQN GTPKSVCQLP FGDPCAVQLM DSGGGDLLFV 301 350 ENSP00000381378/1-859 VSFISNNACA VWKESFQVAA KWEKLSLVLI DDFIGSGTEQ VLLLFKDSLN ENSBTAP00000021852/1-861 ISFKSSHACA VWEKSFQVAA KWEKIRSVLI DDFFGTGTEQ VLLLFKDSWN ENSTTRP00000011526/1-861 ISFRASDACA VGKEKPQVAA KWEKVSSVLI DDFLGTGTEQ VLLLFKDPLN bmy_01282T0/1-854 VSFRSSDACA VWEKNFQVAA KWEKVSSVLV DDFLGTGTEQ VLLLFKDPLN BACU009374/1-571 ISFRSSDACA VWEKNFQVAA KWEKVSSVLI DDFLGTGTEQ VLLLFKDPLN 351 400 ENSP00000381378/1-859 SDCLTSFKIT DLGKINYSSE PSDCNEDDLF EDKQENRYLV VPPLETGLKV ENSBTAP00000021852/1-861 SDCRSSFEIM GHDAFNCSGE TLDCNEDDLF DDKHGNCYLV VLPLERRLKV ENSTTRP00000011526/1-861 SDCLSSFKIT DLDNLNYSSE SLDYNEDDLF DGKEN--YLV VPPLERRLKV bmy_01282T0/1-854 SDCLSSFKIT DLDNLNYSSE TLDYNEDDLL DNKKN--YLV VPPLERRLKV BACU009374/1-571 SDCLSSFKIT DLDSLNYS-- ---------- ---------- ---------V 401 450 ENSP00000381378/1-859 CFSSFRELRQ HLLLKEKIIS KSYKALINLV QGKDDNTSSA EE----KECL ENSBTAP00000021852/1-861 GFISIWELQQ HLLLKEKIIS KSYKALMNLF QRKDDSTLSA EEVKLNMECL ENSTTRP00000011526/1-861 GLVSVQELQQ HLLLKEKVIS KSYKALMNLF QGKDDSTSSA EE----KECL bmy_01282T0/1-854 GLVSVQELQQ HLLLKEKIIS KSYKALMNLF QGKDDSTSSA EE-----ECL BACU009374/1-571 GLVSVQELQQ HLLLKEKIIS KSYKALMNLF QGKDDSTSSA EE-----ECL 451 500 ENSP00000381378/1-859 VPLCGEEENS VHILDEKLSD NFQDSEQLVE KIWYRVIDDS LVVGVKTTSS ENSBTAP00000021852/1-861 VTLCGEEENP VCTFNEKLSD NFQDLEQLVE KIWYRVIEDS LVIGVKATSS ENSTTRP00000011526/1-861 ATLCGEEENP VYTFDEKLSD NFQDSEQLVE KIWYRVIEDS LVVGVKTTSS bmy_01282T0/1-854 VTLCGEEEHP VYTLDEKLXD NFQDSEQLVE KIWYRVIEDS LVVGVKATSS BACU009374/1-571 VTLCGEEENP VYTFDEKLSD NFQDSEQLVE KIWYRVIEDS LVVGVKTTSS 501 550 ENSP00000381378/1-859 LKLSLNDVTL SLLMDQAHDS RFRLLKCQNR VIKLSTNPFP APYLMPCEIG ENSBTAP00000021852/1-861 WKVSLNHVTL LLSVDQGSNS TFPLIKCQNK IFKLTRNSSP VLSSVPYEVG ENSTTRP00000011526/1-861 LKVSLNHVTL SLSMDQAPNS SFLLIKCQSR VIKLSRKCSP VPGSVPYEIG bmy_01282T0/1-854 LKVSLNHVTL SLSMDQAPNS SFPLIKCQNR VIKLSRKSSP VPGSVPYEIG BACU009374/1-571 LKV------- ---------- ---------- ---------- ---------- 551 600 ENSP00000381378/1-859 LEAKRVTLTP DS----KKEE SFVCEHPSKK ECVQIITAVT SLSPLLTFSK ENSBTAP00000021852/1-861 SEVKRIKLSV DS--KEEKEE SVVCEQPLKK EYVQMITAVT ALPPLLTFSN ENSTTRP00000011526/1-861 SEVKKIKLSV DSEEEEEKEE SVVFVQPSEK EYVQMITAVT SLSPLLAFGN bmy_01282T0/1-854 SEVKKIKLSV DSEEEEEKEE SIVCVQPSEK EYVQMITAVT SLSPLLAFSN BACU009374/1-571 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000381378/1-859 FCCTVLLQIM ERESGNCPKD RYVVCGRVFL SLEDLSTGKY LLTFPKKKPI ENSBTAP00000021852/1-861 FCCIVLLQM- -RENGNSSEA HYVQCGRIVL SVEDLSSGKC VLTFPERKPI ENSTTRP00000011526/1-861 FCCIVLLQIR ERENGNRSAT RYVQCGRIAL SLEDLSSGKY LLTFPKKKPI bmy_01282T0/1-854 FCCIVLLQIR EGENGNHSAA HYVQCGRIFL SLEDLSSGKY LLTFPKKKPI BACU009374/1-571 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000381378/1-859 EHMEDLFALL AAFHKSCFQI TSPGYALNSM KVWLLEHMKC EIIKEFPEVY ENSBTAP00000021852/1-861 EHMEDLFTLL AAWHRACFQI TSPMFALTSV RVWLLEHMKC EVLKEFPEIW ENSTTRP00000011526/1-861 EHMEDLFALL AAWQRACFQI ISPSYALTSM KVWLLEHMEC EVIKEFPEIC bmy_01282T0/1-854 EHMEDLFALL XAWQRACFQI ISPSYALTSM KVWLLEHMEC EVIKEFPEIC BACU009374/1-571 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000381378/1-859 FCERPGSFYG TLFTWKQRTP FEGILIIYSR NQTVMFQCLH NLIRILPINC ENSBTAP00000021852/1-861 FCKRPGSFYG TLFNWKQRTP FEGILVVYSR NQTVLFQCLH DLSTVLPINS ENSTTRP00000011526/1-861 FCKRPGSFYG TLFNWKQRTP FEGILIVYSR NQTVLFQCLH NLSSVLPINS bmy_01282T0/1-854 FCKRPGSFYG TLFNWKQRTP FEGILIVYSR NQTVLFQCLH NLSRVLPINS BACU009374/1-571 ---------- ---------- ---------- NQTVLFQCLH NLSRVLPINS 751 800 ENSP00000381378/1-859 FLKNLKSGSE NFLIDNMAFT LEKELVTLSS LSSAIAKHES NFMQRCEVSK ENSBTAP00000021852/1-861 FFKYLELESE DFLIGHLAVA LEKELVTLGS PPSALVKVET SLVQNCEVSK ENSTTRP00000011526/1-861 FFKYLKLGSE DFLIGHLGLA LEKELVILGS FSSALVKVES NLVQSCEASK bmy_01282T0/1-854 FFKYLXLGSE DFLIGNLALA LEKELVTLGS FSSALVKVES NLVQSCEASK BACU009374/1-571 FFKYLKLG-- ---------- ---------- -----IKVES NLVQSCEASK 801 850 ENSP00000381378/1-859 GKSSVVAAAL SDRRENIHPY RKELQREKKK MLQTNLKVSG ALYREITLKV ENSBTAP00000021852/1-861 EKSSDDGAAL SDIEKSIHLY RKELQREKEQ MLGTNLKVSG ALYREMTLKL ENSTTRP00000011526/1-861 EKTSGDVAAL SDIEESIHAY RKELQREKKQ KLGTNLKVSG ALYREMTLKL bmy_01282T0/1-854 EKSSGDVAAL SDIEESIHPY RKELQREKKQ MLGTNLKVSG ALYREMTLKL BACU009374/1-571 EKSSGDVAAL SDIEESTHPY RKELQREKEQ MLGTNLKVSG ALYREKTLKL 851 900 ENSP00000381378/1-859 AEVQLKSDFA AQKLSNL--- - ENSBTAP00000021852/1-861 AEVQLNSDLA AKQLTVYIIC L ENSTTRP00000011526/1-861 AEVQLKSDLA AQKVTDL--- - bmy_01282T0/1-854 AEVQLKSDLA AQKMTDL--- - BACU009374/1-571 AEVQLKSDLA AQKVTDL--- -