KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:31 2014 Check: 00 .. Name: ENSP00000384527/1-1239 Len: 1649 Check: 4392 Weight: 1.00 Name: ENSBTAP00000021869/1-1232 Len: 1649 Check: 3032 Weight: 1.00 Name: ENSTTRP00000002337/1-1241 Len: 1649 Check: 9022 Weight: 1.00 Name: bmy_04526T0/1-1370 Len: 1649 Check: 433 Weight: 1.00 Name: BACU018271/1-1242 Len: 1649 Check: 627 Weight: 1.00 // 1 50 ENSP00000384527/1-1239 MELPNYSRQL LQQLYTLCKE QQFCDCTISI GTIYFRAHKL VLAAASLLFK ENSBTAP00000021869/1-1232 MELPNYSRQL LQQLYTLCKE QQFCDCTISI GTIYFRAHKL VLAAASLLFK ENSTTRP00000002337/1-1241 MELPNYSRQL LQQLYTLCKE QQFCDCTISI GTIYFRAHKL VLAAASLLFK bmy_04526T0/1-1370 ---------- ---------- ---------- ---------- ---------- BACU018271/1-1242 MELPNYSRQL LQQLYTLCKE QQFCDCTISI GTIYFRAHKL VLAAASLLFK 51 100 ENSP00000384527/1-1239 TLLDNTDTIS IDASVVSPEE FALLLEMMYT GKLPVGKHNF SKIISLADSL ENSBTAP00000021869/1-1232 TLLDNTDTIS IDASVVSPEE FALLLEMMYT GKLPVGKHNF SKIISLADSL ENSTTRP00000002337/1-1241 TLLDNTDTIS IDASVVSPEE FALLLEMMYT GKLPVGKHNF SKIISLADSL bmy_04526T0/1-1370 ---------- ---------- ---------- ---------- ---------- BACU018271/1-1242 TLLDNTDTIS IDASVVSPEE FALLLEMMYT GKLPVGKHNF SKIISLADSL 101 150 ENSP00000384527/1-1239 QMFDVAVSCK NLLTSLVNCS VQGQVVRDVS APSSETFRKE PEKPQVEILS ENSBTAP00000021869/1-1232 QMFDVAVSCK NLLASLVNCS VQGQVVRDVS TP-SEPSRKE SEKPETEILS ENSTTRP00000002337/1-1241 QMFDVAVSCK NLLASLVNCS VQGQVVRDVS TPSSESSRKE LEKAEVEILS bmy_04526T0/1-1370 ---------- ---------- ---------- ---------- ---------- BACU018271/1-1242 QMFDVAVSCK NLLTSLVNCS VQGQVVRDVS TPSSESSRKE LEKPEVEILS 151 200 ENSP00000384527/1-1239 SEGAGEPHSS PELAATPGGP VKAETEEAAH SVSQEMSVNS PTAQESQRNA ENSBTAP00000021869/1-1232 SEGAGEHHTS PEVSTPPGGP VKVEVKHGVH TAVQEMRVDP PAAQEIQGHT ENSTTRP00000002337/1-1241 SEGAGELHSS SDVSTPPGGP VKAEVGEVIQ TVVQEMSVDP SAAQGIQGNA bmy_04526T0/1-1370 ---------- ---------- ---------- ---------- ---------- BACU018271/1-1242 SEGAGELHSS PEVSTPPGGP VKAEMGEVIQ TVVQEMSVDP CAAQGIQGNA 201 250 ENSP00000384527/1-1239 ETPAETPTTA EACSPSPAVQ TFSEAKKTST EPGCERKHYQ LNFLLENEGV ENSBTAP00000021869/1-1232 DTPGSH--SA EVCPSAPVVQ TFREAKEAST EQEYEGKHYQ LNFLLENEKI ENSTTRP00000002337/1-1241 DTPVETPLTA EDFSPSPVVQ TFSEAKEASP ESEYEGKHYQ LNFLLENEKI bmy_04526T0/1-1370 ---------- ---------- ---------- ---------- ---------- BACU018271/1-1242 DTPVETPLTA EVFSPSPGVQ TFSEAKEASP EPEYEGKHYQ LNFLLENEKI 251 300 ENSP00000384527/1-1239 FSDALMVTQD VLKKLEMCSE IKGPQKEMIV KCFEGEGGHS AFQRILGKVR ENSBTAP00000021869/1-1232 FSDALLITQD VLKRLEECSE IKDVQKQTIM GCLEGE-GQS AFQRILDKVR ENSTTRP00000002337/1-1241 FSDALLITQD VLKRLEECSE IKGAQKETIM GCLVGEEGQS AFQRILDKVR bmy_04526T0/1-1370 ---------- ---------- ---------M GCLVGEEGQS AFQRILDKVR BACU018271/1-1242 FSDALLITQD VLKRLEECSE IKGAQKETIM GCLVGEEGQS AFQRILDKVR 301 350 ENSP00000384527/1-1239 EESLDVQTVV SLLRLYQYSN PAVKTALLDR KPEDVDTVQP KGSTEEGKTL ENSBTAP00000021869/1-1232 SESLGVQTVV SLLRLYQDSN PAVKTALSDR KLEAVEAVQP KGSTEEGKTL ENSTTRP00000002337/1-1241 SESLDVQTVV SLLRLFQDSN PAVKTTLLGR QPEAVEAVQP KGSTEEGKTL bmy_04526T0/1-1370 SESLDVQTVV SLLSLFQDSN PAVKAALLDG QPEAVEAVQP KGSTKEGKTL BACU018271/1-1242 SESLDVQTVV SLLRLFQDSN PAVKAALLDG QPEAVEAVQP KGNTEEGKTL 351 400 ENSP00000384527/1-1239 SVLLLEHKED LIQCVTQLRP IMESLETAKE EFLTGTEKRV ILNCCEGRTP ENSBTAP00000021869/1-1232 SVLLLEHKED LIRCVTQLRP ILEFLETVEE EFLPGSEKRV ILNCCEGSTP ENSTTRP00000002337/1-1241 SVLLLEHKED LIRCVTQLRP ILEFLETGEE EFLTGSEKRV ILNCCEGGTP bmy_04526T0/1-1370 SVLLLEHKED LIRCVTQLRP ILEFLETGEE EFLTGSEKRV ILNCCEGGTP BACU018271/1-1242 SVLLLEHKED LIRCVTQLRP ILEFLETGEE EFLTGSEKRV ILNCCEGGTP 401 450 ENSP00000384527/1-1239 KETIENLLHR MTEEKTLTAE GLVKLLQAVK TTFPNLGLLL EKLQKSATLP ENSBTAP00000021869/1-1232 KETIEKLLHR MSEEKTLSAE SLVKLLQAVK MTFPDLGLLL ENLQKLATLP ENSTTRP00000002337/1-1241 KETIENLLHR MTEEKTLSAE SLVKLLQAVK MTFPNLGLLL ENLQKLAALP bmy_04526T0/1-1370 KETIENLLHR MAEEKTLSAE SLVKLLQAVK MTFPNLGLLL ENLQKLAALP BACU018271/1-1242 KETIENLLHR MAEEKTLSAE SLVKLLQAVK MTFPNLGLLL ENLQKLAALP 451 500 ENSP00000384527/1-1239 STTVQPSPDD YGTELLRRYH ENLSEIFTDN QILLKMISHM TSLAPGEREV ENSBTAP00000021869/1-1232 STTAQANPDD YGIELLRRYH ENLSEIFTDN QVLLRMIPHV KSIVPGEKEV ENSTTRP00000002337/1-1241 STTVQASPDD YGIELLRRYH ENLSEIFTDN QMLQKMIPHV KSLAPGEREV bmy_04526T0/1-1370 STTVQASPDD YGIELLRRYH ENLSEIFTDD QMLQKMIPHV KSLAPGEREV BACU018271/1-1242 STTVQASPDD YGIELLRRYH ENLSEIFTDN QMLQKMIPHV KSLAPGEREV 501 550 ENSP00000384527/1-1239 MEKLVKRDSG SGGFNSLISA VLEKQTLSAT AIWQLLLVVQ ETKTCPLDLL ENSBTAP00000021869/1-1232 MEKLVRRAAG SRAVHALMSA VLEKHTVSAA AIWQLLLVAQ ETKPCPLSLL ENSTTRP00000002337/1-1241 MEKLVKRDSG SGGFSALMSA VLEEQTLSSA AIWRLLLVAQ ETKACPLNLL bmy_04526T0/1-1370 MEKLVKRDSG SGGFSALMSA VLEEQTLSAA AIWQLLLVAQ ETKACPLNLL BACU018271/1-1242 MEKLVKRDSG SGGFSALMSA VLEEQTLSAA AIWQLLLVAQ ETKACPLNLL 551 600 ENSP00000384527/1-1239 MEEIRREPGA DAFFRAVTTP EHATLETILR HNQLILEAIQ QKIEYKLFTS ENSBTAP00000021869/1-1232 MEEIRREPGA NAFFRAVMTP ESAAFETILR YHRSILEAIQ QTAQLKCLAS ENSTTRP00000002337/1-1241 TEEIRREPGA DAYFRAVMTP ESAAFETILR HHRLILEAIQ QRAELKCLAS bmy_04526T0/1-1370 TEEIRREPGA DAFFRAVMTP ESAAFETILR HHRLILEAIQ QRAELKCLAS BACU018271/1-1242 TEEIRREPGA DAFFRAVMTP ESAAFETILR HRRLILEAIQ QRAELKCLAS 601 650 ENSP00000384527/1-1239 EEEHLAETVK EILSIPSETA SPEASLRAVL SRAMEKSVPA IEICHLLCSV ENSBTAP00000021869/1-1232 EEERLAETAK EILSSSSETA SPEASLGALL SRAAEKSISA TEICQLLCSI ENSTTRP00000002337/1-1241 EEERLAETVK EILSISSETA SPEASLRALL SKAMEKTTSA IEICQLLCSI bmy_04526T0/1-1370 EEERLAETVK EILSISSETA SPEASLRALL SRAMEKSISA IEICQLLCSI BACU018271/1-1242 EEERLAETVK EILSISSETA SPEASLRALL SRAMEKSISA IEICQLLCGI 651 700 ENSP00000384527/1-1239 HKSFPGLQPV MQELAYIGVL TKEDGEKETW KVSNKFHLEA NNKEDEK--- ENSBTAP00000021869/1-1232 HRSSPGLQPV MRELACAGFL TQEKGEKERW TVSGKFYSEG KDKAGEK--- ENSTTRP00000002337/1-1241 HRSFPGLQPV MQELAYAGFL TEEKGEKERW MVSNKFHLEA KDKADEKAAE bmy_04526T0/1-1370 HRSFPGLQPV MQALAYAGFL TQEKGEKERW MVSNKFHLEA KDKADEKAAE BACU018271/1-1242 HRSFPGLQPV MQELVYAGFL TQEKGEKERW MVSNKFHLEA KDKADEKAAE 701 750 ENSP00000384527/1-1239 AAKEDSQPGE QNDQGETGSL PGQQEKEASA SPDPAKKSFI CKACDKSFHF ENSBTAP00000021869/1-1232 PAGEDCQPGN QDSQGETAAL PEQQEKDAST SPDSAKKSFV CKACDKSFHF ENSTTRP00000002337/1-1241 PAEENCQPGK QNGQGETGSL PEEQEKDTSA SPDSAKKSFV CKACDKSFHF bmy_04526T0/1-1370 PAEENCQPGK QDGQGETGSL PEQQEKDTSA SPDSAKKSFV CKACDKSFHF BACU018271/1-1242 PAEENCQPGK QDGQGETGSL PEQQEKDTSA SPDSAKKSFV CKACDKSFHF 751 800 ENSP00000384527/1-1239 YCRLKVHMKR CRVAKSKQVQ CKECSETKDS KKELDKHQLE AHGAGGEPDA ENSBTAP00000021869/1-1232 YCRLKVHTKR CRVARSRQVQ CTECNETKDS KKELEKHQLE AHGAGGEPSI ENSTTRP00000002337/1-1241 YCRLKVHMKR CRVAKSKQVQ CKECNETKDS KKELEKHQLE AHGTGGEADV bmy_04526T0/1-1370 YCRLKVHMKR CRVAKSKQVQ CKECNETKDS KKELEKHQLE AHGTGGEPDV BACU018271/1-1242 YCRLKVHMKR CRVAKSKQVQ CKECNETKDS KKELEKHQLE AHGTGGEPDV 801 850 ENSP00000384527/1-1239 PKKKKKRLPV TCDLCGREFA HASGMQYHKL TEHFDEKPFS CEECGAKFAA ENSBTAP00000021869/1-1232 PKKKKKRLPV TCDLCGREFA HASGMQYHKL TEHFDEKPFS CEECGAKFAA ENSTTRP00000002337/1-1241 PKKKKKRLPV TCDLCGREFA HASGMQYHKL TEHFDEKPFS CEECGAKFAA bmy_04526T0/1-1370 PKKKKKRLPV TCDLCGREFA HASGMQYHKL TEHFDEKPFS CEECGAKFAA BACU018271/1-1242 PKKKKKRLPV TCDLCGREFA HASGMQYHKL TEHFDEKPFS CEECGAKFAA 851 900 ENSP00000384527/1-1239 NSTLKNHLRL HTGDRPFMCK HCLMTFTQAS ALAYHTKKKH SEGKMYACQY ENSBTAP00000021869/1-1232 NSTLKNHLRL HTGDRPFMCK HCLMTFTQAS ALAYHTKKKH SEGKMYACQY ENSTTRP00000002337/1-1241 NSTLKNHLRL HTGDRPFMCK HCLMTFTQAS ALAYHTKKKH SEGKMYACQY bmy_04526T0/1-1370 NSTLKNHLRL HTGDRPFMCK HCLMTFTQAS ALAYHTKKKH SEGKMYACQY BACU018271/1-1242 NSTLKNHLRL HTGDRPFMCK HCLMTFTQAS ALAYHTKKKH SEGKMYACQY 901 950 ENSP00000384527/1-1239 CDAVFAQSIE LSRHVRTHTG DKPYVCRDCG KGFRQANGLS IHLHTFH--- ENSBTAP00000021869/1-1232 CDAVFAQSIE LSRHVRTHTG DKPYVCRDCG KGFRQANGLS IHLHTFH--- ENSTTRP00000002337/1-1241 CDAVFAQSIE LSRHVRTHTG DKPYVCRDCG KGFRQANGLS IHLHTFH--- bmy_04526T0/1-1370 CDAVFAQSIE LSRHVRTHTG DKPYVCRDCG KGFRQANGLS IHLHTFHILL BACU018271/1-1242 CDAVFAQSIE LSRHVRTHTG DKPYVCRDCG KGFRQANGLS IHLHTFH--- 951 1000 ENSP00000384527/1-1239 ---------- ---------- -----NIEDP YDCKKCRMSF PTLQDHRKHI ENSBTAP00000021869/1-1232 ---------- ---------- -----NIEDP YDCKKCRMSF PTLQDHRKHI ENSTTRP00000002337/1-1241 ---------- ---------- -----NIEDP YDCKKCRMSF PTLQDHRKHI bmy_04526T0/1-1370 LELHTENHLS LIVACGVPLP PLMEPDIEDP YDCKKCRMSF PTLQDHRKHI BACU018271/1-1242 ---------- ---------- -----NIEDP YDCKKCRMSF PTLQDHRKHI 1001 1050 ENSP00000384527/1-1239 HEVHSKEYHP CPTCGKIFSA PSMLERHVVT HVGGKPFSCG ICNKAYQQLS ENSBTAP00000021869/1-1232 HEVHSKEYHP CPTCGKIFSA PSMLERHMVT HVGGKPFSCG ICNKAYQQLS ENSTTRP00000002337/1-1241 HEVHSKEYHP CPTCGKIFSA PSMLERHMVT HVGGKPFSCG ICNKAYQQLS bmy_04526T0/1-1370 HEVHSKEYHP CPTCGKIFSA PSMLERHMVT HVGGKPFSCG ICNKAYQQLS BACU018271/1-1242 HEVHSKEYHP CPTCGKIFSA PSMLERHMVT HVGGKPFSCG ICNKAYQQLS 1051 1100 ENSP00000384527/1-1239 GLWYHNRTHH PDVFAAQNHR SSKFSSLQCS SCDKTFPNTI EHKKHIKAEH ENSBTAP00000021869/1-1232 GLWYHNRTHH PDVFAAQNHR SSKFSSLQCS SCDKTFSNTL EHKKHIKTEH ENSTTRP00000002337/1-1241 GLWYHNRTHH PDVFAAQNHR SSKFSSLQCS SCDKTFPNTI EHKKHIKAEH bmy_04526T0/1-1370 GLWYHNRTHH PDVFAAQNHR SSKFSSLQCS SCDKTFPNTI EHKKHIKAEH BACU018271/1-1242 GLWYHNRTHH PDVFAAQNHR SSKFSSLQCS SCDKTFPNTI EHKKHIKAEH 1101 1150 ENSP00000384527/1-1239 ADMKFHECDQ CKELFPTPAL LQVHVK---C Q-HSGSQPFR CLYCAATFRF ENSBTAP00000021869/1-1232 ADVKFHECDQ CKELFPTPAL LQVHVK---C Q-HSGSQPFR CLYCAATFRF ENSTTRP00000002337/1-1241 ADMKFHECGQ CKELFPTPAL LQVHIK---C Q-HSGSQPFR CLYCAA-FRF bmy_04526T0/1-1370 ADMKFHECDQ CKELFPTPAL LQVHINHSLC RPPPGSQPFR CLYCAATFRF BACU018271/1-1242 ADMKFHECDQ CKELFPTPAL LQVHIK---C Q-HSGSQPFR CLYCAATFRF 1151 1200 ENSP00000384527/1-1239 PGALQHHVTT EHFKQSETTF PCELCGELFT SQAQLDSHLE SEHPKVMSTE ENSBTAP00000021869/1-1232 PGALQHHVTT EHFKQSESTF PCELCGELFT SQAQLDCHLE SEHPKVLGAE ENSTTRP00000002337/1-1241 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04526T0/1-1370 PGALQHHVTT EHFKQSESTF PCELCGELFT SQAQLHCHLE SEHPKVTGTE BACU018271/1-1242 PGALQHHVTT EHFKQSENTF PCELCGELFT SQAQLDCHLE SEHPKVTGTE 1201 1250 ENSP00000384527/1-1239 TQAAASQMAQ VIQTPEPVAP TEQVITLEET QLAGSQVFVT LPDSQASQAS ENSBTAP00000021869/1-1232 TQ---SQMVQ VIQTPEPVAP MEQVVTLEET QLAGSQVFVT LPDSQTAQTS ENSTTRP00000002337/1-1241 XXXXXXXXXX VIQTPEPVAQ TEQVITLEET QLAGSQVFVT LPDSQTSQTS bmy_04526T0/1-1370 SQAAASQMEQ VIQTPEPVAQ TEQVITLEET QLAGSQVFVT LPDSQTSQTS BACU018271/1-1242 SQAAASQMVQ VIQTPEPVAQ TEQVITLEET QLAGSQVFVT LPDSQTSQTS 1251 1300 ENSP00000384527/1-1239 SELVAVTVED LLDGTVTLIC GEAK------ ---------- ---------- ENSBTAP00000021869/1-1232 SELVAVTVED LLDGTVTLIC GEAK------ ---------- ---------- ENSTTRP00000002337/1-1241 SELVAVTVED LLDGTVTLIC GEAK------ ---------- ---------- bmy_04526T0/1-1370 SELVAVTVED LLDGTVTLIC GEANVQSSSS VQASGPQSGA AGAASAFWPF BACU018271/1-1242 SELVAVTVED LLDGTVTLIC GEAK------ ---------- ---------- 1301 1350 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_04526T0/1-1370 KTERRAPSDH LGIPSLEHTQ PLPHGCRPSS PPHGGSRTGS SMLTQDGFIS BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_04526T0/1-1370 MLSPTSSVQS AIPKTKPLEC FFWECSVPAG EGSIWVMVGT SVTITRCWKG BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_04526T0/1-1370 RRWDLNTGQC VCWRPSCSVQ AAGPALPASS CVLISCANHL SLSAQGSSHS BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_04526T0/1-1370 EVSGGDPDHG RTLVFFRITR LATHFAKSGQ SSGICCQLHS HPVAQQQEHE BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_04526T0/1-1370 ACAGSGRHEG KARPDFRLCS EWTPEAAAST AISQCCALET PEHGFCCRKT BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- ---------- bmy_04526T0/1-1370 FSSPTWPFYS FLPLLPKRPS ELLPRRTCYR GPLVHITCSH VTVVVSALLP BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000384527/1-1239 ---------- ---------- ---------- ---------- --------- ENSBTAP00000021869/1-1232 ---------- ---------- ---------- ---------- --------- ENSTTRP00000002337/1-1241 ---------- ---------- ---------- ---------- --------- bmy_04526T0/1-1370 WCCPCGLRLN PGGIGSGVEE SVDFSEHIFI QACKTPGEEE RADRFQAGV BACU018271/1-1242 ---------- ---------- ---------- ---------- ---------