KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:35 2014 Check: 00 .. Name: bmy_19022T0/1-1031 Len: 1229 Check: 2666 Weight: 1.00 Name: ENSBTAP00000021878/1-1196 Len: 1229 Check: 7320 Weight: 1.00 Name: ENSP00000290039/1-1223 Len: 1229 Check: 3037 Weight: 1.00 Name: BACU000194/1-1223 Len: 1229 Check: 3471 Weight: 1.00 Name: ENSTTRP00000009150/1-1223 Len: 1229 Check: 3637 Weight: 1.00 // 1 50 bmy_19022T0/1-1031 ---------- ---------- ---------- ---MPE---- ---------- ENSBTAP00000021878/1-1196 ---------- ---------- ---------- ---IPQLAKK IREKFNRYLD ENSP00000290039/1-1223 MRRLAAEELG VVTMQRIFNS FVYTEKISNG ESEVQQLAKK IREKFNRYLD BACU000194/1-1223 MRRLAAEELG VVTMQRIFNS FVYTEKISNG ESEVQQLAKK IREKFNRYLD ENSTTRP00000009150/1-1223 MRRLAAEELG VVTMQRIFNS FVYTEKISNG ESEVQQLAKK IREKFNRYLD 51 100 bmy_19022T0/1-1031 ---------- ---AQCLRAP VD-LSVICLF PTP------- ---------- ENSBTAP00000021878/1-1196 VVNRNKQVVE ASYTAHLTSP LTAIQDCCTI PPSMMEFDGN FNTNVSRTIS ENSP00000290039/1-1223 VVNRNKQVVE ASYTAHLTSP LTAIQDCCTI PPSMMEFDGN FNTNVSRTIS BACU000194/1-1223 VVNRNKQVVE ASYTAHLTSP LTAIQDCCTI PPSMMEFDGN FNTNVSRTIS ENSTTRP00000009150/1-1223 VVNRNKQVVE ASYTAHLTSP LTAIQDCCTI PPSMMEFDGN FNTNVSRTIS 101 150 bmy_19022T0/1-1031 ---------- ---------- PVLADNLKSN PGIKWQYFSS EEGIFTVFPA ENSBTAP00000021878/1-1196 CDRLSTTVNS RAFNPGRDLN SVLADNLKSN PGIKWQYFSS EEGIFTVFPA ENSP00000290039/1-1223 CDRLSTTVNS RAFNPGRDLN SVLADNLKSN PGIKWQYFSS EEGIFTVFPA BACU000194/1-1223 CDRLSTTVNS RAFNPGRDLN SVLADNLKSN PGIKWQYFSS EEGIFTVFPA ENSTTRP00000009150/1-1223 CDRLSTTVNS RAFNPGRDLN SVLADNLKSN PGIKWQYFSS EEGIFTVFPA 151 200 bmy_19022T0/1-1031 HKFRCKGSYE HRSRPIYVST VRPQSKHIVV ILDHGASVTD TQLQIAKDAA ENSBTAP00000021878/1-1196 HKFRCKGSYE HRSRPIYVST VRPQSKQVVV ILDHGASVTD TQLQIAKDAA ENSP00000290039/1-1223 HKFRCKGSYE HRSRPIYVST VRPQSKHIVV ILDHGASVTD TQLQIAKDAA BACU000194/1-1223 HKFRCKGSYE HRSRPIYVST VRPQSKHIVV ILDHGASVTD TQLQIAKDAA ENSTTRP00000009150/1-1223 HKFRCKGSYE HRSRPIYVST VRPQSKHIVV ILDHGASVTD TQLQIAKDAA 201 250 bmy_19022T0/1-1031 QVILSAIDEH DKISMLTVAD TVRTCSLDQC YKTFLSPATS ETKRKMSTFV ENSBTAP00000021878/1-1196 QVILSAIDEH DKISVLTVAD TVRTCSLDQC YKTFLSPATS ETKRKMSTFV ENSP00000290039/1-1223 QVILSAIDEH DKISVLTVAD TVRTCSLDQC YKTFLSPATS ETKRKMSTFV BACU000194/1-1223 QVILSAIDEH DKISMLTVAD TVRTCSLDQC YKTFLSPATS ETKRKMSTFV ENSTTRP00000009150/1-1223 QVILSAIDEH DKISMLTVAD TVRTCSLDQC YKTFLSPATS ETKRKMSTFV 251 300 bmy_19022T0/1-1031 SSVKSLDSPT QHAVGFQKAF QLIRSTNNST KFQANTDMVI IYLSAGITSK ENSBTAP00000021878/1-1196 SSVKSLDSPT QHAVGFQKAF QLIRSTNNST KFQANTDMVI IYLSAGITSK ENSP00000290039/1-1223 SSVKSSDSPT QHAVGFQKAF QLIRSTNNNT KFQANTDMVI IYLSAGITSK BACU000194/1-1223 SSVKSLDSPT QHAVGFQKAF QLIRSTNNST KFQANTDMVI IYLSAGITSK ENSTTRP00000009150/1-1223 SSVKSLDSPT QHAVGFQKAF QLIRSTNNST KFQANTDMVI IYLSAGITSK 301 350 bmy_19022T0/1-1031 DSSEEDKKAT LRVISEENSF LNNSVMILTY ALMNDGVTGL KELAFLRDLA ENSBTAP00000021878/1-1196 DSSEEDKKAT LRVINEENSF LNNSVMILTY ALMNDGVTGL KELAFLRDLA ENSP00000290039/1-1223 DSSEEDKKAT LQVINEENSF LNNSVMILTY ALMNDGVTGL KELAFLRDLA BACU000194/1-1223 DSSEEDKKAT LRVISEENSF LNNSVMILTY ALMNDGVTGL KELAFLRDLA ENSTTRP00000009150/1-1223 DSSEEDKKAT LRVISEENSF LNNSVMILTY ALMNDGVTGL KELAFLRDLA 351 400 bmy_19022T0/1-1031 EQNSGKYGVL DRTALPVIKG SMMVLNQLSN LETTVGRFYT NLPNRMIDEA ENSBTAP00000021878/1-1196 EQNSGKYGVL DRIALPVIKG SMMVLNQLSN LETTVGRFYT NLPNRMIDEA ENSP00000290039/1-1223 EQNSGKYGVP DRMALPVIKG SMMVLNQLSN LETTVGRFYT NLPNRMIDEA BACU000194/1-1223 EQNSGKYGVL DRTALPVIKG SMMVLNQLSN LETTVGRFYT NLPNRMIDEA ENSTTRP00000009150/1-1223 EQNSGKYGVL DRTALPVIKG SMMVLNQLSN LETTVGRFYT NLPNRMIDEA 401 450 bmy_19022T0/1-1031 VFSLPFSDEM GDGLIMTVSK PCYFGNLLLG IVGVDVNLAY ILEDVTYYQD ENSBTAP00000021878/1-1196 VFSLPFSDEM GDGLIMTVSK PCYFGNLLLG IVGVDVNLAY ILEDVTYYQD ENSP00000290039/1-1223 VFSLPFSDEM GDGLIMTVSK PCYFGNLLLG IVGVDVNLAY ILEDVTYYQD BACU000194/1-1223 VFSLPFSDEM GDGLIMTVSK PCYFGNLLLG IVGVDVNLAY ILEDVTYYQD ENSTTRP00000009150/1-1223 VFSLPFSDEM GDGLIMTVSK PCYFGNLLLG IVGVDVNLAY ILEDVTYYQD 451 500 bmy_19022T0/1-1031 SLASYTFLID DKGYTLMHPS LTRPYLLSEP PLHTDIIHYE NIPKFELVRQ ENSBTAP00000021878/1-1196 SLASYTFLID DKGYTLMHPS LTRPYLLSEP PLHTDIIHYE NIPKFELVRQ ENSP00000290039/1-1223 SLASYTFLID DKGYTLMHPS LTRPYLLSEP PLHTDIIHYE NIPKFELVRQ BACU000194/1-1223 SLASYTFLID DKGYTLMHPS LTRPYLLSEP PLHTDIIHYE NIPKFELVRQ ENSTTRP00000009150/1-1223 SLASYTFLID DKGYTLMHPS LTRPYLLSEP PLHTDIIHYE NIPKFELVRQ 501 550 bmy_19022T0/1-1031 NIL---SLPL GSQIIAVPVN STLSWHINKL RETGKEAYNV SYAWKMVQDT ENSBTAP00000021878/1-1196 NILSQCSLPL GSQIIAVPVN SSLSWHINKL RETGKEAYNV SYAWKMAQFN ENSP00000290039/1-1223 NIL---SLPL GSQIIAVPVN SSLSWHINKL RETGKEAYNV SYAWKMVQDT BACU000194/1-1223 NIL---SLPL GSQIIAVPVN STLSWHINKL RETGKEAYNV SYAWKMVQDT ENSTTRP00000009150/1-1223 NIL---SLPL GSQIIAVPVN SSLSWHINKL RETGKEAYNV SYAWKMVQDT 551 600 bmy_19022T0/1-1031 SFILCIVVIQ PEIPVKQLKN LNTVPSSKLL YHRLDLLGQP SACLHFKQLA ENSBTAP00000021878/1-1196 TSVLCLHRIQ PEIPVKQLKN LNTVPSSKLL YHRLDLLGQP SACLHFKQLA ENSP00000290039/1-1223 SFILCIVVIQ PEIPVKQLKN LNTVPSSKLL YHRLDLLGQP SACLHFKQLA BACU000194/1-1223 SFILCIVVIQ PEIPVKQLKN LNTVPSSKLL YHRLDLLGQP SACLHFKQLA ENSTTRP00000009150/1-1223 SFILCIVVIQ PEIPVKQLKN LNTVPSSKLL YHRLDLLGQP SACLHFKQLA 601 650 bmy_19022T0/1-1031 TLESPTVMLS AGSFSSPYEH LSQPETKRMV EHYTAYLSDN TRLIANPGLK ENSBTAP00000021878/1-1196 TLESPTVMLS AGSFSSPYEH LSQPETKRMV EHYTAYLSDN TRLIANPGLK ENSP00000290039/1-1223 TLESPTIMLS AGSFSSPYEH LSQPETKRMV EHYTAYLSDN TRLIANPGLK BACU000194/1-1223 TLESPTVMLS AGSFSSPYEH LSQPETKRMV EHYTAYLSDN TRLIANPGLK ENSTTRP00000009150/1-1223 TLESPTVMLS AGSFSSPYEH LSQPETKRMV EHYTAYLSDN TRLIANPGLK 651 700 bmy_19022T0/1-1031 FSVRNEVMAT SHVTDEWMTQ MEMSSLNTYI VRRYIATPNG VLRIYPGSLM ENSBTAP00000021878/1-1196 FSVRNEVMAT SHVTDEWMTQ MEMSSLNTYI VRRYIATPNG VLRIYPGSLM ENSP00000290039/1-1223 FSVRNEVMAT SHVTDEWMTQ MEMSSLNTYI VRRYIATPNG VLRIYPGSLM BACU000194/1-1223 FSVRNEVMAT SHVTDEWMTQ MEMSSLNTYI VRRYIATPNG VLRIYPGSLM ENSTTRP00000009150/1-1223 FSVRNEVMAT SHVTDEWMTQ MEMSSLNTYI VRRYIATPNG VLRIYPGSLM 701 750 bmy_19022T0/1-1031 DKAFDPTRRQ WYLHAVANPG LISLTGPYLD VGGAGYVVTI SHTIHSSSTQ ENSBTAP00000021878/1-1196 DKAFDPTRRQ WYLHAVANPG LISLTGPYLD VGGAGYVVTI SHTIHSSSTQ ENSP00000290039/1-1223 DKAFDPTRRQ WYLHAVANPG LISLTGPYLD VGGAGYVVTI SHTIHSSSTQ BACU000194/1-1223 DKAFDPTRRQ WYLHAVANPG LISLTGPYLD VGGAGYVVTI SHTIHSSSTQ ENSTTRP00000009150/1-1223 DKAFDPTRRQ WYLHAVANPG LISLTGPYLD VGGAGYVVTI SHTIHSSSTQ 751 800 bmy_19022T0/1-1031 LSSGHTVAVM GIDFTLRYFY KVLMDLLPVC NQDGGNKIRC FIMEDRGYLV ENSBTAP00000021878/1-1196 LSSGHTVAVM GIDFTLRYFY KVLMDLLPVC NQDGGNKIRC FIMEDRGYLV ENSP00000290039/1-1223 LSSGHTVAVM GIDFTLRYFY KVLMDLLPVC NQDGGNKIRC FIMEDRGYLV BACU000194/1-1223 LSSGHTVAVM GIDFTLRYFY KVLMDLLPVC NQDGGNKIRC FIMEDRGYLV ENSTTRP00000009150/1-1223 LSSGHTVAVM GIDFTLRYFY KVLMDLLPVC NQDGGNKIRC FIMEDRGYLV 801 850 bmy_19022T0/1-1031 AHPTLIDPKG HAPVEQQHIT HKEPLVANDI LNHPNFVKKN LCNSFSDRTV ENSBTAP00000021878/1-1196 AHPTLIDPKG HAPVEQQHIT HKEPLVANDI LNHPNFVKKN LCNSFSDRTV ENSP00000290039/1-1223 AHPTLIDPKG HAPVEQQHIT HKEPLVANDI LNHPNFVKKN LCNSFSDRTV BACU000194/1-1223 AHPTLIDPKG HAPVEQQHIT HKEPLVANDI LNHPNFVKKN LCNSFSDRTV ENSTTRP00000009150/1-1223 AHPTLIDPKG HAPVEQQHIT HKEPLVANDI LNHPNFVKKN LCNSFSDRTV 851 900 bmy_19022T0/1-1031 QRFYKFNTSL VGDLTNLVHG SHCSKYRLAR IPGTNAFVGI VNETCDSLAF ENSBTAP00000021878/1-1196 QRFYKFNTSL VGDLTNLVHG SHCSKYRLAR IPGTNAFVGI VNETCDSLAF ENSP00000290039/1-1223 QRFYKFNTSL AGDLTNLVHG SHCSKYRLAR IPGTNAFVGI VNETCDSLAF BACU000194/1-1223 QRFYKFNTSL VGDLTNLVHG SHCSKYRLAR IPGTNAFVGI VNETCDSLAF ENSTTRP00000009150/1-1223 QRFYKFNTSL VGDLTNLVHG SHCSKYRLAR IPGTNAFVGI VNETCDSLAF 901 950 bmy_19022T0/1-1031 CACSMVDRLC LNCHRMEQNE CECPCECPLE VNECTGNLTN AENRNPSCEV ENSBTAP00000021878/1-1196 CACSMVDRLC LNCHRMEQNE CECPCECPLE VNECTGNLTN AENRNPSCEV ENSP00000290039/1-1223 CACSMVDRLC LNCHRMEQNE CECPCECPLE VNECTGNLTN AENRNPSCEV BACU000194/1-1223 CACSMVDRLC LNCHRMEQNE CECPCECPLE VNECTGNLTN AENRNPSCEV ENSTTRP00000009150/1-1223 CACSMVDRLC LNCHRMEQNE CECPCECPLE VNECTGNLTN AENRNPSCEV 951 1000 bmy_19022T0/1-1031 HQEPVTYTAI DPGLQDALHQ CVNSRCSQRM E--------- ------NSDG ENSBTAP00000021878/1-1196 HQEPVTYTAI DPGLQDALHQ CVNSRCSQRT ESGDCFGVLD CEWCMVDSDG ENSP00000290039/1-1223 HQEPVTYTAI DPGLQDALHQ CVNSRCSQRL ESGDCFGVLD CEWCMVDSDG BACU000194/1-1223 HQEPVTYTAI DPGLQDALHQ CVNSRCSQRM ESGDCFGVLD CEWCMVDSDG ENSTTRP00000009150/1-1223 HQEPVTYTAI DPGLQEALHQ CVNSRCSQRM ESGDCFGVLD CEWCMVDSDG 1001 1050 bmy_19022T0/1-1031 KTHLDKSYCA PQKECFGGIV GAKSPYVDDM GAIGDEVVTL NMIKSAPVGP ENSBTAP00000021878/1-1196 KTHLDKSYCA PQKECFGGIV GAKSPYVDDM GSIGDEVVTL NMIKSAPVGP ENSP00000290039/1-1223 KTHLDKPYCA PQKECFGGIV GAKSPYVDDM GAIGDEVITL NMIKSAPVGP BACU000194/1-1223 KTHLDKSYCA PQKECFGGIV GAKSPYVDDL GAIGDEVVTL NMIKSAPVGP ENSTTRP00000009150/1-1223 KTHLDKSYCA PQKECFGGIV GAKSPYVDDM GAIGDEVVTL NMIKSAPVGP 1051 1100 bmy_19022T0/1-1031 VAGGIMGCIM VLVLAVYAYR HQIHRRSHQH MSPLAAQ--- EMSVRMSNLE ENSBTAP00000021878/1-1196 VAGGIMGCIM VLVLAVYAYR HQIHRRSHQH MSPLAAQGRV EMSVRMSNLE ENSP00000290039/1-1223 VAGGIMGCIM VLVLAVYAYR HQIHRRSHQH MSPLAAQ--- EMSVRMSNLE BACU000194/1-1223 VAGGIMGCIM VLVLAVYAYR HQIHRRSHQH MSPLAAQ--- EMSVRMSNLE ENSTTRP00000009150/1-1223 VAGGIMGCIM VLVLAVYAYR HQIHRRSHQH MSPLAAQ--- EMSVRMSNLE 1101 1150 bmy_19022T0/1-1031 NDRDERDDDG HEDRGIISNT RFIAAVIERH AHSPERRRRY WGRSGTESDH ENSBTAP00000021878/1-1196 NDRDERDDDG PEDRGIISNT RFIAAVIERH AHSPERRRRY WGRSGTESDH ENSP00000290039/1-1223 NDRDERDDDS HEDRGIISNT RFIAAVIERH AHSPERRRRY WGRSGTESDH BACU000194/1-1223 NDRDERDDDG HEDRGIISNT RFIAAVIERH AHSPERRRRY WGRSGTESDH ENSTTRP00000009150/1-1223 NDRDERDDDG HEDRGIISNT RFIAAVIERH AHSPERRRRY WGRSGTESDH 1151 1200 bmy_19022T0/1-1031 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021878/1-1196 GYSTMSPQED SENPPCTNDP LSAGVDVGNH DEDLELDTPP QTAALLSHKF ENSP00000290039/1-1223 GYSTMSPQED SENPPCNNDP LSAGVDVGNH DEDLDLDTPP QTAALLSHKF BACU000194/1-1223 GYSTMSPQED SENPPCTNDP LSAGVDVGNH DEDLELDTPP QTAALLSHKF ENSTTRP00000009150/1-1223 GYSTMSPQED SENPPCTNDP LSAGVDVGNH DEDLELDTPP QTAALLSHKF 1201 1250 bmy_19022T0/1-1031 ---------- ---------- --------- ENSBTAP00000021878/1-1196 HHYRLHHPTL HHSHHLQAAV TVHTVDAEC ENSP00000290039/1-1223 HHYRSHHPTL HHSHHLQAAV TVHTVDAEC BACU000194/1-1223 HHYRLHHPTL HHGHHLQAAV TVHTVDAEC ENSTTRP00000009150/1-1223 HHYRLHHPTL HHSHHLQAAV TVHTVDAEC