KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:38 2014 Check: 00 .. Name: ENSP00000347717/1-475 Len: 496 Check: 2666 Weight: 1.00 Name: ENSBTAP00000021892/1-475 Len: 496 Check: 9866 Weight: 1.00 Name: ENSTTRP00000005463/1-473 Len: 496 Check: 8563 Weight: 1.00 Name: bmy_20603T0/1-417 Len: 496 Check: 5290 Weight: 1.00 Name: BACU003580/1-496 Len: 496 Check: 709 Weight: 1.00 // 1 50 ENSP00000347717/1-475 MAAKSQPNIP KAKSLDGVTN DRTASQGQWG RAWEVDWFSL ASVIFLLLFA ENSBTAP00000021892/1-475 MAAKSQPSAP KTKSTSGLTN GNAAAQGQWG RAWEVDWFSL ASVIFLLLFA ENSTTRP00000005463/1-473 MAAKSQSNDP KTKSPGSIS- -KAATHGQWG RAWEVDWFSL ASVTFLLLFA bmy_20603T0/1-417 ---------- ---------- ---------- ---------- ---------- BACU003580/1-496 MAAKPQSNDP QTKSPGNITF GKAATQGQWG RAWEVDWFSS ASVIFLLLFA 51 100 ENSP00000347717/1-475 PFIVYYFIMA CDQYSCALTG PVVDIVTGHA RLSDIWAKTP PITRKAAQLY ENSBTAP00000021892/1-475 PFIVYYFIMA CDQYGCSLTV PVADLATGRA RLADIWARTP PVTAKAAQIY ENSTTRP00000005463/1-473 PFIVYYFIMA CDQYSCSLTA PLVDIATGQA RLSDIWAKTP PVTMKAAQIY bmy_20603T0/1-417 --------MA CDQYSCSLTA PLADIATGRA RLSDIWAKTP PVTTKAAQIY BACU003580/1-496 PFIVYYFIMA CDQYSCSLTA PLADIATGRA RLSDIWAKTP PVTTKAAQIY 101 150 ENSP00000347717/1-475 TLWVTFQVLL YTSLPDFCHK FLPGYVGGIQ EGAVTPAGVV NKYQINGLQA ENSBTAP00000021892/1-475 TAWVTLQVXL YMLLPDFCHK FLPGYVGGVQ EGAVTPAGAV NKYEINGLQA ENSTTRP00000005463/1-473 VAWVTFQVLL YVLLPDFCHK FLPGYVGGVQ EGAMTPAGIV NKYEINGLQA bmy_20603T0/1-417 VAWVTFQVLL YMLLPDFCHK FLPGYVGGVQ EGAMTPAGIV NKYEINGLQA BACU003580/1-496 VAWVTFQVLL YMLLPDFCHK FLPGYVGGVQ EGAMTPAGIV NKYEINGLQA 151 200 ENSP00000347717/1-475 WLLTHLLWFA NAHLLSWFSP TIIFDNWIPL LWCANILGYA VSTFAMVKGY ENSBTAP00000021892/1-475 WLLTHLLWFA NAHLLGWFSP TIIFDNWIPL LWCANILGYT VSTFAMVKGY ENSTTRP00000005463/1-473 WLITHLLWFL NSYLLACFSP TIIFDNWIPL LWCANILGYA VSTFAMIKGY bmy_20603T0/1-417 WLITHLLWFV NSYLLACFPP TIVFDNWIPL LWCANILGYA VSTFAMIKGY BACU003580/1-496 WLITHLLWFV NCYLLACFSP TVIFDNWIPL LWCANILGYA VSTFATVKGY 201 250 ENSP00000347717/1-475 FFPTSARDCK FTGNFFYNYM MGIEFNPRIG KWFDFKLFFN GRPGIVAWTL ENSBTAP00000021892/1-475 LFPTDARECK FTGNFFYNYM MGVEFNPRIG KWFDFKLFFN GRPGIVAWTL ENSTTRP00000005463/1-473 FFPTDARDCK FTGNFLYNYM MGVEFNPRIG EWFDFKLFFN GRPGIVAWTL bmy_20603T0/1-417 FFPTDARDCK FTGNFFYNYM MGVEFNPRIG KWFDFKLFFN GRPGIVAWTL BACU003580/1-496 FFPTDARDCK FTGNFFYNYM MGVEFNPRIG KWFDFKLFFN GRPGIVAWTL 251 300 ENSP00000347717/1-475 INLSFAAKQR ELHSHVTNAM VLVN------ ---------- -----VLQAI ENSBTAP00000021892/1-475 INLSFAAKQQ ELYGHVTNSM VLVN------ ---------- -----ILQAI ENSTTRP00000005463/1-473 INLSFAAKQQ ELYGHVTNSM VLVN------ ---------- -----VLQAI bmy_20603T0/1-417 INLSFAAKQQ ELYGHVTNSM VLVN------ ---------- -----VLQAI BACU003580/1-496 INLSFAAKQQ ELYGHVTNSM VLVNVLQCGV PRAPISVCGP YTATPVLQAI 301 350 ENSP00000347717/1-475 YVIDFFWNET WYLKTIDICH DHFGWYLGWG DCVWLPYLYT LQGLYLVYHP ENSBTAP00000021892/1-475 YVLDFFWNET WYLKTIDICH DHFGWYLGWG DCVWLPYLYT LQGLYLVYHP ENSTTRP00000005463/1-473 YVLDFFWNET WYLKTIDICH DHFGWYLGWG DCVWLPYLYT LQGLYLVYHP bmy_20603T0/1-417 YVLDFFWNET WYLKTIDICH DHFGWYLGWG DCVWLPYLYT LQGLYLVYHP BACU003580/1-496 YVLDFFWNET WYLKTIDICH DHFGWYLGWG DCVWLPYLYT LQGLYLVYHP 351 400 ENSP00000347717/1-475 VQLSTPHAVG VLLLGLVGYY IFRVANHQKD LFRRTDGRCL IWGRKPKVIE ENSBTAP00000021892/1-475 VQLPTYYALG VLLLGLLGYY IFRMTNHQKD LFRRTDGRCL IWGRKPKAIE ENSTTRP00000005463/1-473 VQLPTRYSLG VLLLGLLGYY IFRMANHQKD LFRRTDGRCL IWGRKPRVIE bmy_20603T0/1-417 VQLPTRYSLG VLLLGLLGYY IFRTANHQKD LFRRTDGRCL IWGRKPKVIE BACU003580/1-496 VQLPTRYSLG VLLLGLLGYY IFRMANHQKD LFRRTDGRCL IWGRKPKVIE 401 450 ENSP00000347717/1-475 CSYTSADGQR HHSKLLVSGF WGVARHFNYV GDLMGSLAYC LACGGGHLLP ENSBTAP00000021892/1-475 CSYTSADGQR HHSKLLVSGF WGVARHFNYT GDLMGSLAYC LACGGGHLLP ENSTTRP00000005463/1-473 CSFTSADEQK HHSKLLVSGF WGVARHFNYT GDLMGSLAYC LACGGGHLLP bmy_20603T0/1-417 CSFTSADKQK HHSKLLVSGF WGVARHFNYT GDLMGSLAYC LACGGGHLLP BACU003580/1-496 CSFTSADKQK HHSKLLVSGF WGVARHFNYT GDLMGSLAYC LACGGGHLLP 451 500 ENSP00000347717/1-475 YFYIIYMAIL LTHRCLRDEH RCASKYGRDW ERYTAAVPYR LLPGIF ENSBTAP00000021892/1-475 YFYIIFMAIL LTHRCLRDEH RCANKYGRDW EHYTAAVPYR LLPGIF ENSTTRP00000005463/1-473 YFYIIYMAIL LTHRCLRDEH RCANKYGRDW ERYTAAVPYR LLPGIF bmy_20603T0/1-417 YFYIIYMAVL LTHRCLRDEH RCANKYGRDW DRYTAAVPYR LLPGIF BACU003580/1-496 YFYIIYMAVL LTHRCLRDEH RCASKYGRDW ERYTAAVPYR LLPGIF