KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:40 2014 Check: 00 .. Name: bmy_20601T0/1-782 Len: 923 Check: 1669 Weight: 1.00 Name: ENSTTRP00000005492/1-707 Len: 923 Check: 5975 Weight: 1.00 Name: ENSP00000326424/1-706 Len: 923 Check: 6750 Weight: 1.00 Name: ENSBTAP00000021894/1-706 Len: 923 Check: 4532 Weight: 1.00 Name: BACU003581/1-706 Len: 923 Check: 7124 Weight: 1.00 // 1 50 bmy_20601T0/1-782 --MQVSCMTS ---------- ---------- ---------- ---------- ENSTTRP00000005492/1-707 MGRKVTVATC ALNQWALDFE GNLQRILKSI EIAKHKGARY RLGPELEICG ENSP00000326424/1-706 MGRKVTVATC ALNQWALDFE GNLQRILKSI EIAKNRGARY RLGPELEICG ENSBTAP00000021894/1-706 MGRKVTVATC ALNQWALDFE GNLQRILKSI EIAKHRGARY RLGPELEICG BACU003581/1-706 MGRKVTVATC ALNQWALDFE GNLQRILKSI EIAKHKGARY RLGPELEICG 51 100 bmy_20601T0/1-782 -GVLVQY--- ---------- ---------- ---------- ---------- ENSTTRP00000005492/1-707 YGCWDHYYES DTLLHSLQVL AALLESPVTQ DIICDVGMPV MHRNVRYNCR ENSP00000326424/1-706 YGCWDHYYES DTLLHSFQVL AALVESPVTQ DIICDVGMPV MHRNVRYNCR ENSBTAP00000021894/1-706 YGCWDHYYES DTLLHSLQVL AALLESPVTQ DIICDVGMPV MHRNVRYNCR BACU003581/1-706 YGCWDHYYES DTLLHSLQVL AALLESPVTQ DIICDVGMPI MHRNVRYNCR 101 150 bmy_20601T0/1-782 ---------- ------MAQT G--------- -WPRG----- ---LKR--SG ENSTTRP00000005492/1-707 VIFLNRKILL IRPKMALANE GNYRELRWFT PWSRSRXXXX XIFLPRMIQD ENSP00000326424/1-706 VIFLNRKILL IRPKMALANE GNYRELRWFT PWSRSRHTEE Y-FLPRMIQD ENSBTAP00000021894/1-706 VIFLNRKILL IRPKMALANE GNYRELRWFT PWSRSRQTEE Y-FLPRMLQD BACU003581/1-706 VIFLNRKILL IRPKMALANE GNYRELRWFT PWSRSRQTEE Y-FLPRMIQD 151 200 bmy_20601T0/1-782 LPTQETVPFG DAVLSTQDTC IGSEVCEELW TPHSPHVDMG LDGVEIFTNA ENSTTRP00000005492/1-707 LTKQETVPFG DAVLSTRDTC IGSEVCEELW TPHSPHVDMG LDGVEIFTNA ENSP00000326424/1-706 LTKQETVPFG DAVLVTWDTC IGSEICEELW TPHSPHIDMG LDGVEIITNA ENSBTAP00000021894/1-706 LTKQETVPFG DAVLSTWDTC IGSEVCEELW TPHSPHVDMG LDGVEIFTNA BACU003581/1-706 LTKQETVPFG DAVLSTRDTC IGSEVCEELW TPRSPHVDMG LDGVEIFTNA 201 250 bmy_20601T0/1-782 SGSHHVLRKA HARVDLVTMA TTKNGGIYLL ANQNGCDGDR LYYDGCALIA ENSTTRP00000005492/1-707 SGSHHMLRKA HARVDLVTMA TTKNGGIYLL ANQKGCDGDR LYYDGCALIA ENSP00000326424/1-706 SGSHQVLRKA NTRVDLVTMV TSKNGGIYLL ANQKGCDGDR LYYDGCAMIA ENSBTAP00000021894/1-706 SGSHHVLRKA HARVDLVTMA TTKNGGIYLL ANQKGCDGDR LYYDGCALIA BACU003581/1-706 SGSHHVLRKA HARVDLVTMA TTKNGGIYLL ANQKGCDGDR LYYDGCALIA 251 300 bmy_20601T0/1-782 MNGSIFAQGS QFSLDDVASR VSPYPRVKVD FALSCHEDLL EPLSEPVEWK ENSTTRP00000005492/1-707 VNGSIFAQGS QFSLDDVE-- ---------- -VLTATLDL- ---------- ENSP00000326424/1-706 MNGSVFAQGS QFSLDDVE-- ---------- -VLTATLDL- ---------- ENSBTAP00000021894/1-706 MNGSIFAQGS QFSLDDVE-- ---------- -VLTATLDL- ---------- BACU003581/1-706 MNGSIFAQGS QFSLDDVE-- ---------- -VLTATLDL- ---------- 301 350 bmy_20601T0/1-782 YHSPAEEISL GPACWLWDFL RRSQQAGFFL PLSGGVDSGA TACLVYSMCH ENSTTRP00000005492/1-707 -----EDV-- ---------- ---------- ---------- ---------- ENSP00000326424/1-706 -----EDV-- ---------- ---------- ---------- ---------- ENSBTAP00000021894/1-706 -----EDI-- ---------- ---------- ---------- ---------- BACU003581/1-706 -----EDV-- ---------- ---------- ---------- ---------- 351 400 bmy_20601T0/1-782 QVCEAVKHGS RSGSAGRRPD HCEPDQLHPP GPPGALRPRP DHLLHGQREL ENSTTRP00000005492/1-707 ---------- ---------- ---------- ---------- ---------- ENSP00000326424/1-706 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021894/1-706 ---------- ---------- ---------- ---------- ---------- BACU003581/1-706 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_20601T0/1-782 LPGDVQQSRR SRPADRKVAG QGRRARPGGG DGGKLHPRPR LWASRVSPYP ENSTTRP00000005492/1-707 ------RSYR AEISSRNLA- ---------- ---------- --ASRVSPYP ENSP00000326424/1-706 ------RSYR AEISSRNLA- ---------- ---------- --ASRASPYP ENSBTAP00000021894/1-706 ------RSYR AEISSRNLA- ---------- ---------- --ASRVSPYP BACU003581/1-706 ------RSYR AEISSRNLA- ---------- ---------- --ASKVSPYP 451 500 bmy_20601T0/1-782 RVKVDFALSC HEDLLEPLSE PVEWKYHSPA EEISLGPACW LWDFLRRSQQ ENSTTRP00000005492/1-707 RVKVDFALSC HEDLLEPLSE PIEWKYHSPA EEISLGPACW LWDFLRRSQQ ENSP00000326424/1-706 RVKVDFALSC HEDLLAPISE PIEWKYHSPE EEISLGPACW LWDFLRRSQQ ENSBTAP00000021894/1-706 RVKVDFALSC HEDLLEPVSE PIEWKYHSPA EEISLGPACW LWDFLRRSRQ BACU003581/1-706 RVKVDFALSC HDDLLEPLSE PVEWKYHSPA EEISLGPACW LWDFLRRSQQ 501 550 bmy_20601T0/1-782 AGFFLPLSGG VDSGATACLV YSMCHQVCEA VKHGNQEVLA DVRTIVNQTS ENSTTRP00000005492/1-707 AGFFLPLSGG VDSGATACVV YSMCHQVCEA VKRGSQEVLD DVRTIVNQTS ENSP00000326424/1-706 AGFLLPLSGG VDSAATACLI YSMCCQVCEA VRSGNEEVLA DVRTIVNQIS ENSBTAP00000021894/1-706 AGFFLPLSGG VDSAATACLV YSMCHQVCEA VKRGNLEVLA DVRTIVNQLS BACU003581/1-706 AGFFLPLSGG VDSGATACLV YSMCHQVCEA VKHGNQEVLA DVRTIVNQTS 551 600 bmy_20601T0/1-782 YTPQDPRELC GRVLTTCYMA SENSSRETCS RAGDLAQQIG ---------- ENSTTRP00000005492/1-707 YTPQDPRELC GRILTTCYMA SENSSRETCN RARELAQQIG XXXXXXXXXX ENSP00000326424/1-706 YTPQDPRDLC GRILTTCYMA SKNSSQETCT RARELAQQIG SHHISLNIDP ENSBTAP00000021894/1-706 YTPQDPRELC GRVLTTCYMA SENSSQETCD RARELAQQIG SHHIGLHIDP BACU003581/1-706 YTPQDPRELC GRVLTTCYMA SENSSRETCS RARDLAQQIG SHHIGLNIDP 601 650 bmy_20601T0/1-782 ---------S LVTGKSPVFA AHGGSSRESL ALQNVQARVR MVIAYLFVQL ENSTTRP00000005492/1-707 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXARVR MVIAYLFAQL ENSP00000326424/1-706 AVKAVMGIFS LVTGKSPLFA AHGGSSRENL ALQNVQARIR MVLAYLFAQL ENSBTAP00000021894/1-706 VVKALVGLFS LVTGASPRFA VHGGSDRENL ALQNVQARVR MVIAYLFAQL BACU003581/1-706 AVKAVMGIFS LVTGKSPVFA AHGGSSRESL ALQNVQARVR MVIAYLFAQL 651 700 bmy_20601T0/1-782 SLWSRGAPGR LLVLGSANVD ESTSGFSKTL ESAKLWPQGP GRSESSDAQG ENSTTRP00000005492/1-707 SLWSRGAPGR LLVLGSANVD E--------- ---------- ---------- ENSP00000326424/1-706 SLWSRGVHGG LLVLGSANVD E--------- ---------- ---------- ENSBTAP00000021894/1-706 SLWSRGAPGG LLVLGSANVD E--------- ---------- ---------- BACU003581/1-706 SLWSRGAPGR LLVLGSANVD E--------- ---------- ---------- 701 750 bmy_20601T0/1-782 LDGQATRFVE SAAPRVCCMD TACSFSCCSL LGYLTKYDCS SADVNPIGGI ENSTTRP00000005492/1-707 ---------- ---------- --------SL LGYLTKYDCS SADINPIGGI ENSP00000326424/1-706 ---------- ---------- --------SL LGYLTKYDCS SADINPIGGI ENSBTAP00000021894/1-706 ---------- ---------- --------SL LGYLTKYDCS SADINPIGGI BACU003581/1-706 ---------- ---------- --------SL LGYLTKYDCS SADVNPIGGI 751 800 bmy_20601T0/1-782 SKTDLRAFVQ LCMERFELPA LQSILAAPAT AELEPLAHGR VSQTDEEDMG ENSTTRP00000005492/1-707 SKTDLRAFVQ LCMERFQLPA LQSILVAPAT AELEPLAHGR VSQTDEEDMG ENSP00000326424/1-706 SKTDLRAFVQ FCIQRFQLPA LQSILLAPAT AELEPLADGQ VSQTDEEDMG ENSBTAP00000021894/1-706 SKTDLRAFVQ LCVERFQLPA LQSILAAPAT AELEPLAHGR VSQTDEEDMG BACU003581/1-706 SKTDLRAFVQ LCVERFELPA LQSILVAPAT AELEPLAHGR VSQTDEEDMG 801 850 bmy_20601T0/1-782 VTYAELSVYG RLRKIAKMGP YSMFCKLLCM WKDVCTPRQV ADKVKRFFSK ENSTTRP00000005492/1-707 VTYAELSVYG RLRKIAKMGP YSMFCKLLYV WKDVCTPRQV ADKVKRFFSK ENSP00000326424/1-706 MTYAELSVYG KLRKVAKMGP YSMFCKLLGM WRHICTPRQV ADKVKRFFSK ENSBTAP00000021894/1-706 MTYAELSVYG RLRKVAKTGP YSMFCKLLDM WRDTCSPRQV ADKVKCFFSK BACU003581/1-706 VTYAELSVYG RLRKIAKMGP YSMFCRLLYM WKDVCTPRQV ADKVKRFFSK 851 900 bmy_20601T0/1-782 YSMNRHKMTT LTPAYHAESY SPDDNRFDLR PFLYNTRWPW QFRCIETQVN ENSTTRP00000005492/1-707 YSTNRHKMTT LTPAYHAESY SPDDNRFDLR PFLYNARWPW QFRCIEAQVL ENSP00000326424/1-706 YSMNRHKMTT LTPAYHAENY SPEDNRFDLR PFLYNTSWPW QFRCIENQVL ENSBTAP00000021894/1-706 YSMNRHKMTT LTPAYHAESY SPDDNRFDLR PFLYNTRWPW QFRCIENQVL BACU003581/1-706 YSTNRHKMTT LTPAYHAESY SPDDNRFDLR PFLYNTRWPW QFRCIETQVL 901 950 bmy_20601T0/1-782 QAKMVFLPVK YLLREYQLIS IEV ENSTTRP00000005492/1-707 QLER------ ---AEHQDLD GVD ENSP00000326424/1-706 QLER------ ---AEPQSLD GVD ENSBTAP00000021894/1-706 QLEG------ ---RQRQELD GVD BACU003581/1-706 QLER------ ---RQRQDLD GVD