KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:15:42 2014 Check: 00 .. Name: bmy_06691T0/1-411 Len: 508 Check: 3846 Weight: 1.00 Name: ENSP00000345102/1-473 Len: 508 Check: 7076 Weight: 1.00 Name: ENSBTAP00000021901/1-466 Len: 508 Check: 711 Weight: 1.00 Name: ENSTTRP00000002920/1-427 Len: 508 Check: 804 Weight: 1.00 // 1 50 bmy_06691T0/1-411 MSNPEPPTET PGANAPTWLT QPTYSNLVWT RAR------- ---------- ENSP00000345102/1-473 MSSPEPPTEP PEPDNPTWST QPTYSNLGQI RAHLLPSKAC RLRTPGSLST ENSBTAP00000021901/1-466 MSNLEPPTKM PGANTPTCSA QHTYSNLGEV RTHLMPSKAC RPRTSEPPAT ENSTTRP00000002920/1-427 MSSPEPPTET PGANAPTWLT QPTYSNLS-- -ARLLPSKAC CSPTSERPAT 51 100 bmy_06691T0/1-411 ---------- QATTGRGQPV PLQSCPSSRW T--------- ---------- ENSP00000345102/1-473 NPEPLPPPLP KKILTRTQSL PTRRTLHPSS IQVQPPRRPF LGSHSVDKSQ ENSBTAP00000021901/1-466 DPQPLPPPLP KKTLTRTQSL PTHKASSPSL TRAGPPRKPL VGSRSVDESQ ENSTTRP00000002920/1-427 DPQPL----P KKTLTRAQSL PTHKSPSPGP TQAGQPQKPL LGPRSVHESQ 101 150 bmy_06691T0/1-411 ---------- ----PSWASP SA-------- ---------A LEARQLEGLR ENSP00000345102/1-473 AA---VGPAC LPAELTFGPA DAPLGLSLRD LHSPEAVHTA LAARQLQGLR ENSBTAP00000021901/1-466 AGDDRARPAQ PPAEPSFSSL DTELGLSLHD LHHPEAVHAA LEARQLEGLR ENSTTRP00000002920/1-427 AGDDRAGPAC RPAELPCCSL DTELGLSLR- ---------A LEARQLEGLR 151 200 bmy_06691T0/1-411 AVYARLHARL LGGLPGPCRP GHRLRLLDSS PCVESWDALY YRLVRRNKEA ENSP00000345102/1-473 TIYARLRARL MGGHPGPCHP GHSFRLLDSS PCAESGDALY YRVVRAHEDA ENSBTAP00000021901/1-466 SVHARLHTRL LGGRPGPCRP EHGFRLLDSS PCVESGDALY YRVVRVHEEA ENSTTRP00000002920/1-427 AVYARLHARL LGGLPGPCRP GHRFRLLDSS PCVENWDALH HRLVRRDKEA 201 250 bmy_06691T0/1-411 WHLLAAKVSP ASAPPPRRFP QCPVQGITQG SSDSGPIAYF ATNLRTNTVS ENSP00000345102/1-473 WHILVAKVPK PGADVPHPWG LELQASLSPH FNLQGLCGLV PEGTLPGA-- ENSBTAP00000021901/1-466 WHLLAAKVPK PGAEETHTWG LELQVSLRPH FNLQGLCGLL PEGSLPEA-- ENSTTRP00000002920/1-427 WHLLAAKVPK PGADKPHPCG LGPQASLAPH FNHQELCGLA PEGALPET-- 251 300 bmy_06691T0/1-411 PWSRVSQGRR PCWPGISTSR SCVVWRPRAH FPRRPGAAPW RWRRRCRSSR ENSP00000345102/1-473 PW-------- ---------R GAVALAAEV- ----PERTVA QWLAEACTQP ENSBTAP00000021901/1-466 PW-------- ---------S GCVVLVAEV- ----PELTVA QWLVEAGARP ENSTTRP00000002920/1-427 PW-------- ---------S SPVALAAEM- ----PELTVV QWPVETGAQP 301 350 bmy_06691T0/1-411 WSSGLWRRAR SRLRSSQGRG PAAPAALERR EARAAAPAEL RPENLLLAAP ENSP00000345102/1-473 PEEFVWAVAL LLLQLS---- ----AALKFL EAWGAALVEL RPENLLLVAP ENSBTAP00000021901/1-466 PEEFTKTVAL LLLQLS---- ----AALERL EARGVALAEL RPENMLLVAP ENSTTRP00000002920/1-427 PEEFA-AVPL GLL------- -----ALERP EARAVALAEL RPKNLMLAAL 351 400 bmy_06691T0/1-411 RGCSAARPQR LLLVDFGRG- --PPRPPG-- --------RP LREPLGPGAP ENSP00000345102/1-473 RGCATTGPPR LLLTDFGRVC LQPPGPPGSP GPHAPQLGSL LRALLSLAAP ENSBTAP00000021901/1-466 RGCMATGPPR LLLADFGRV- --RPRPPGTP GIHARQLSRL FRELLGPGAP ENSTTRP00000002920/1-427 RGCLAARPQR LLLADFGRG- --PPRPAA-- --HARQLGSP LRELLGPGAT 401 450 bmy_06691T0/1-411 LATSLAVGLE HLAAQLARAR PPAAGTHGAL QMLLWGPGPE LRGHGAPLGS ENSP00000345102/1-473 STTPLAAGLE LLAAQLTRLR PSASRTRGAL QALLWGPGPE LRGRGAPLGP ENSBTAP00000021901/1-466 LATPVAAGLE RLAAQLTRVR PSAARTRGAL QALLWGPGPE LRSHGTPLGS ENSTTRP00000002920/1-427 LATSLAVGLQ HLAAQLARAQ PSEAGTCGAV --LLWA---- -------LGS 451 500 bmy_06691T0/1-411 -------WLR MRHALLVLHL AERAVGGEVP SLEDWLCCEY LAKATEDSLY ENSP00000345102/1-473 WLRALGPWLR VRRGLLVLRL AERAAGGEAP SLEDWLCCEY LAEATESSMG ENSBTAP00000021901/1-466 -------WLQ VRRTMLVLHL AERAVGGEVP GLEDWLCCEY LMEATAASVD ENSTTRP00000002920/1-427 -------WLR MRRVLLVLHL AERAVGGEVP SLEDWLCCEY LAKATEDSLY 501 550 bmy_06691T0/1-411 LALELLWN ENSP00000345102/1-473 QALALLWD ENSBTAP00000021901/1-466 LALSLLWD ENSTTRP00000002920/1-427 LALELLCN