KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:44 2014 Check: 00 .. Name: ENSBTAP00000021914/1-1131 Len: 1142 Check: 9402 Weight: 1.00 Name: BACU006453/1-1009 Len: 1142 Check: 3006 Weight: 1.00 Name: ENSP00000332756/1-1132 Len: 1142 Check: 2666 Weight: 1.00 Name: bmy_07997T0/1-949 Len: 1142 Check: 4619 Weight: 1.00 Name: ENSTTRP00000003193/1-1134 Len: 1142 Check: 3865 Weight: 1.00 // 1 50 ENSBTAP00000021914/1-1131 IYKVV----- -FNASCCAGE EKRVGTRTVF VGNHPVSETE AYIAQKFCDN BACU006453/1-1009 MEKCDEKLTF PLSLGQCAGE EKRVGTRTVF VGNHPVSETE AYIAQKFCDN ENSP00000332756/1-1132 MQMVP---SL PPA-SECAGE EKRVGTRTVF VGNHPVSETE AYIAQRFCDN bmy_07997T0/1-949 MEKCDEKLTF PLSLGQCAGE EKRVGTRTVF VGNHPVSETE AYIAQKFCDN ENSTTRP00000003193/1-1134 MERVP---SF PPA-SECAGE EKRVGTRTVF VGNHPVSETE AYIAQKFCDN 51 100 ENSBTAP00000021914/1-1131 RIISSKYTLW NFLPKNLFEQ FRRIANFYFL IIFLIQVTVD TPTSPITSGL BACU006453/1-1009 RIVSSKYTLW NFLPKNLFEQ FRRIANFYFL IIFLVQVTVD TPTSPVTSGL ENSP00000332756/1-1132 RIVSSKYTLW NFLPKNLFEQ FRRIANFYFL IIFLVQVTVD TPTSPVTSGL bmy_07997T0/1-949 RIVSSKYTLW NFLPKNLFEQ FRRIANFYFL IIFLVQVTVD TPTSPVTSGL ENSTTRP00000003193/1-1134 RIVSSKYTLW NFLPKNLFEQ FRRIANFYFL IIFLVQVTVD TPTSPVTSGL 101 150 ENSBTAP00000021914/1-1131 PLFFVITVTA IKQGYEDWLR HRADNEVNKS TVYIIENAKR VKKESEKIKV BACU006453/1-1009 PLFFVITVTA IKQGYEDWLR HRADNEVNKS TVYIIENAKR VRKESEKIKV ENSP00000332756/1-1132 PLFFVITVTA IKQGYEDCLR HRADNEVNKS TVYIIENAKR VRKESEKIKV bmy_07997T0/1-949 PLFFVITVTA IKQ------- ---------- ---------- ---------V ENSTTRP00000003193/1-1134 PLFFVITVTA IKQGYEDWLR HRADNEVNKS TVYIIENAKR VRKESEKIKV 151 200 ENSBTAP00000021914/1-1131 GDIVEVQADE TFPCDLILLS SCTVDGTCYV TTASLDGESN CKTHYAVRDT BACU006453/1-1009 GDVVEVQADE TFPCDLILLS SCTVDGTCYV TTASLDGESN CKTHYAVRDT ENSP00000332756/1-1132 GDVVEVQADE TFPCDLILLS SCTTDGTCYV TTASLDGESN CKTHYAVRDT bmy_07997T0/1-949 GDVVEVQADE TFPCDLILLS SCTIDGTCYV TTASLDGESN CKTHYAVRDT ENSTTRP00000003193/1-1134 GDVVEVQADE TFPCDLILLS SCTIDGTCYV TTASLDGESN CKTHYAVRDT 201 250 ENSBTAP00000021914/1-1131 IELRTVESID NLRAAIECEQ PQPDLYKFVG RINIYSNSIE AVARSLGPEN BACU006453/1-1009 IELCTAESID TLRAAIECEQ PQPDLYKFVG RISIYSNSLE AVARSLGPEN ENSP00000332756/1-1132 IALCTAESID TLRAAIECEQ PQPDLYKFVG RINIYSNSLE AVARSLGPEN bmy_07997T0/1-949 IELCTAESID TLRAAIECEQ PQPDLYKFVG RISIYSNSLE AVARSLGPEN ENSTTRP00000003193/1-1134 IELCTAESID TLRAAIECEQ PQPDLYKFVG RISIYSNSLE AVARSLGPEN 251 300 ENSBTAP00000021914/1-1131 LLLKGATLKN TKKIYGVAVY TGMETKMALN YQGKSQKRSA VEKSINAFLI BACU006453/1-1009 LLLKGATLKN TKKIYGVAVY TGMETKMALN YQGKSQKRSA VEKSINAFLI ENSP00000332756/1-1132 LLLKGATLKN TEKIYGVAVY TGMETKMALN YQGKSQKRSA VEKSINAFLI bmy_07997T0/1-949 LLLKGATLKN TKKIYGVAVY TGMETKMALN YQGKSQKRSA VEKSINAFLI ENSTTRP00000003193/1-1134 LLLKGATLKN TKKIYGVAVY TGMETKMALN YQGKSQKRSA VEKSINAFLI 301 350 ENSBTAP00000021914/1-1131 VYLFILLTKA AICTTLKYVW QSTPHNDEPW YNQKTQKERE TWKVLKMFTD BACU006453/1-1009 VYLFILLTKA AVCTTLKYVW QSTPYNDEPW YNQKTQKERE TLKVLKMFTD ENSP00000332756/1-1132 VYLFILLTKA AVCTTLKYVW QSTPYNDEPW YNQKTQKERE TLKVLKMFTD bmy_07997T0/1-949 VYLFILLTKA AVCTTLKYVW QSTPYNDEPW YNQKTQKERE TLKVLKMFTD ENSTTRP00000003193/1-1134 VYLFILLTKA AVCTTLKYVW QSTPYNDEPW YNQKTQKERE TLKVLKMFTD 351 400 ENSBTAP00000021914/1-1131 FLSFMVLFNF IIPVSMYVTV EMQKFLGSFF ISWDNDFYDE EINEGALVNT BACU006453/1-1009 FLSFMVLFNF IIPVSMYVTV EMQKFLGSFF ISWDKDFYDE EINEGALVNT ENSP00000332756/1-1132 FLSFMVLFNF IIPVSMYVTV EMQKFLGSFF ISWDKDFYDE EINEGALVNT bmy_07997T0/1-949 FLSFMVLFNF IIPVSMYVTV EMQKFLGSFF ISWDKDFYDE EINEGALVNT ENSTTRP00000003193/1-1134 FLSFMVLFNF IIPVSMYVTV EMQKFLGSFF ISWDKDFYDE EINEGALVNT 401 450 ENSBTAP00000021914/1-1131 SDLNEELGQV DYVFTDKTGT LTENTMEFIE CCIDGHKYKG VAQETDGLSQ BACU006453/1-1009 SDLNEELGQV DYVFTDKTGT LTENSMEFIE CCIDGHKYKG VTQEADGLSQ ENSP00000332756/1-1132 SDLNEELGQV DYVFTDKTGT LTENSMEFIE CCIDGHKYKG VTQEVDGLSQ bmy_07997T0/1-949 SDLNEELGQV DYVFTDKTGT LTENSMEFIE CCIDGHKYKG VTQEADGHSQ ENSTTRP00000003193/1-1134 SDLNEELGQV DYVFTDKTGT LTENSMEFIE CCIDGHKYKG VTQEADGLSQ 451 500 ENSBTAP00000021914/1-1131 TDGPLPYLDR ADKNREELFL RALCLCHTVE VKPNDTVDGV TESSELTYMS BACU006453/1-1009 TDGPLPYFDK ADKNREELFL RALCLCHTVE IKTNDAVDGV TESAELTYMS ENSP00000332756/1-1132 TDGTLTYFDK VDKNREELFL RALCLCHTVE IKTNDAVDGA TESAELTYIS bmy_07997T0/1-949 TDGPLPYFDK ADK------- ---------- ---------- -----VAFSA ENSTTRP00000003193/1-1134 TDGPLPYFDK ADKNREELFL RALCLCHTVE IKTNDAVDGV TESAELTYMS 501 550 ENSBTAP00000021914/1-1131 SSPDEIESEI TGGQRYGFTF VGVQNGYMRV ENQRKEIEEY ELLHTLNFDA BACU006453/1-1009 SSPDEI-ALV KGAKRYGFTF VGMRNGHMRV ENQRKEIEEY ELFHTLNFDS ENSP00000332756/1-1132 SSPDEI-ALV KGAKRYGFTF LGNRNGYMRV ENQRKEIEEY ELLHTLNFDA bmy_07997T0/1-949 ---------- -----YGFTF VGIRNGHMRV ENQRKEIEEY ELLHTLNFDS ENSTTRP00000003193/1-1134 SSPDEI-ALV KGAKRYGFTF VGMRNGHMRV ENQRKEIEEY ELLHTLNFDS 551 600 ENSBTAP00000021914/1-1131 VRRRMSVIVK TQTGDILLFC KGADSAVFPR VQNHEIDLIK VHVEHNAMEG BACU006453/1-1009 VRRRMSVVVK TPSGDILLFC KGADSAVFPR VQNHEIELTK VHVERNAMDG ENSP00000332756/1-1132 VRRRMSVIVK TQEGDILLFC KGADSAVFPR VQNHEIELTK VHVERNAMDG bmy_07997T0/1-949 VRRRMSVVVK TPSGDILLFC KGADSAVFPR VQNHEIELTK VHVERNAMDG ENSTTRP00000003193/1-1134 VRRRMSVVVK TQSGDILLFC KGADSAVFPR VQNHEIELTK VHVERNAMDG 601 650 ENSBTAP00000021914/1-1131 YRTLCIAFKE IAPDDYERVN RQLIEAKMAL QDREEKMEKV FDEIETDMHL BACU006453/1-1009 YRTLCVAFKE IAPDDYERIN RQLIEAKMAL QDREEKMEKV FDEIETNMNL ENSP00000332756/1-1132 YRTLCVAFKE IAPDDYERIN RQLIEAKMAL QDREEKMEKV FDDIETNMNL bmy_07997T0/1-949 YRTLCVAFKE IAPDDYERIN RQLIEAKMAL QDREEKMEKV FDEIETNMNL ENSTTRP00000003193/1-1134 YRTLCVAFKE IAPDDYERIN RQLVEAKMAL QDREEKMEKV FDEIETNMNL 651 700 ENSBTAP00000021914/1-1131 IGATAVEDKL QDQAAETIEA LHAAGLKVWV LTGDKMETAK STCYACRLFQ BACU006453/1-1009 IGATAVEDKL QDQAAETIEA LHAAGLKVWV LTGDKMETAK STCYACRLFQ ENSP00000332756/1-1132 IGATAVEDKL QDQAAETIEA LHAAGLKVWV LTGDKMETAK STCYACRLFQ bmy_07997T0/1-949 IGATAVEDKL QDQAAETIEA LHAAGLKVWV LTGDKMETAK STCYACRLFQ ENSTTRP00000003193/1-1134 IGATAVEDKL QDQAAETIEA LHAAGLKVWV LTGDKMETAK STCYACRLFQ 701 750 ENSBTAP00000021914/1-1131 TNTELLELTT KTIEESERKE DRLHELLTEY RKKLLHEFPK STRSLKKAWT BACU006453/1-1009 TSTELLELTT KTIQESERKE DRLHELLIEY RKKLLHEFPK STRSLKKAWT ENSP00000332756/1-1132 TNTELLELTT KTIEESERKE DRLHELLIEY RKKLLHEFPK STRSFKKAWT bmy_07997T0/1-949 TSTELLELTT KTIQESERKE DRLHELLIEY RKKLLHEFPK STRSLKKAWT ENSTTRP00000003193/1-1134 TSTELLELTT KTIQESERKE DRLHELLIEY RKKLLHEFPK STRSLKKAWT 751 800 ENSBTAP00000021914/1-1131 EHQEYGLIID GSTLSLILNS SQDSGSNNYK SIFLQICMKC TAVLCCRMAP BACU006453/1-1009 EHQEYGLIID GSTLSLILNS SHDSGSNNYK SIFLQICMKC TAVLCCRMAP ENSP00000332756/1-1132 EHQEYGLIID GSTLSLILNS SQDSSSNNYK SIFLQICMKC TAVLCCRMAP bmy_07997T0/1-949 EHQEYGLIID GSTLSLILNS SHDSGSNNYK NIFLQICMKC TAVLCCRMAP ENSTTRP00000003193/1-1134 EHQEYGLIID GSTLSLILNS SQDSGSNNYK SIFLQICMKC TAVLCCRMAP 801 850 ENSBTAP00000021914/1-1131 LQKAQIVRMV KNLKGSPITL SIGDGANDVS MILESHVGIG IKGKEGRQAS BACU006453/1-1009 LQKAQIVRMV KNLKGSPITL SIGDGANDVS MILESHVGID ---------- ENSP00000332756/1-1132 LQKAQIVRMV KNLKGSPITL SIGDGANDVS MILESHVGIG IKGKEGRQAA bmy_07997T0/1-949 LQKAQIVRMV KNLKGSPITL SIGDGANDVS MILESHVGIG IKGKEGRQAA ENSTTRP00000003193/1-1134 LQKAQIVRMV KNLKGSPITL SIGDGANDVS MILESHVGIG IKGKEGRQAA 851 900 ENSBTAP00000021914/1-1131 RNSDYAVPKF KHLKKLLLAH GHLYYVRIAH LVQYFFYKNL CFILPQFLYQ BACU006453/1-1009 ---------- ---------- --------DC YITFLF---- ---------- ENSP00000332756/1-1132 RNSDYSVPKF KHLKKLLLAH GHLYYVRIAH LVQYFFYKNL CFILPQFLYQ bmy_07997T0/1-949 RNSDYSVPKF KHLKKLLLAH GHLYYVRIAH LVQYFFYK-- ---------- ENSTTRP00000003193/1-1134 RNSDYSVPKF KHLKKLLLAH GHLYYVRIAH LVQYFFYKNF CCSEPQ-LFQ 901 950 ENSBTAP00000021914/1-1131 FFC---GFSQ QPLYDAAYLT MYNICFTSLP ILAYSLLEQH INIDTLTSDP BACU006453/1-1009 --C---GLSL QPLYDAAYLT MYNICFTSLP ILAYSLLEQH INIDTLTSDP ENSP00000332756/1-1132 FFC---GFSQ QPLYDAAYLT MYNICFTSLP ILAYSLLEQH INIDTLTSDP bmy_07997T0/1-949 ---------- -PLYDAAYLT MYNICFTSLP ILAYSLLEQH INIDTLTSDP ENSTTRP00000003193/1-1134 CSCKREALVL PPLYDAAYLT MYNICFTSLP ILAYSLLEQH INIDTLTSDP 951 1000 ENSBTAP00000021914/1-1131 RLYMKISGNA MLQLGPFLYW TFLAAFEGTV FFFGTYFLFQ TTSLDENGKV BACU006453/1-1009 RLYMKISGNA MLQLGPFLYW TFLAAFEGTV FFFGTYFLFQ TSSLEENAK- ENSP00000332756/1-1132 RLYMKISGNA MLQLGPFLYW TFLAAFEGTV FFFGTYFLFQ TASLEENGKV bmy_07997T0/1-949 RLYMKISGNA MLQLGPFLYW TFLAAFEGTV FFFGTYFLFQ TSSLEENAKV ENSTTRP00000003193/1-1134 RLYMKISGNA MLQLGPFLYW TFLAAFEGTV FFFGTYFLFQ TSSLEENAKV 1001 1050 ENSBTAP00000021914/1-1131 YGNWTFGTII FTILVFTVTL KLALDTRFWT WINHLVIWGS LAFYVFFSFF BACU006453/1-1009 ----PIKTLP HCGVCPGLAN KQLTGKEMWP ---QFLVRG- ---------- ENSP00000332756/1-1132 YGNWTFGTIV FTVLVFTVTL KLALDTRFWT WINHFVIWGS LAFYVFFSFF bmy_07997T0/1-949 YGNWTFGTIV FTVLVFTVTL KLALDTRFWT WINHFVIWGS LAFYVFFSFF ENSTTRP00000003193/1-1134 YGNWTFGTIV FTVLVFTVTL KLALDTRFWT WINHFVIWGS LAFYVFFSFF 1051 1100 ENSBTAP00000021914/1-1131 WGGIIWPFLK QQRMYFVFAQ MLSSVSVWLT IILLIFVSLS PEMLRIVLRS BACU006453/1-1009 ------PIVD QASPHLM--- ---------- ---------- ---------- ENSP00000332756/1-1132 WGGIIWPFLK QQRMYFVFAQ MLSSVSTWLA IILLIFISLF PEILLIVLKN bmy_07997T0/1-949 WGGII----- ---------- ---------- ---------- ---------- ENSTTRP00000003193/1-1134 WGGIIWPFLK QQRMYFVFAQ MLSSVSTWLA IVLLIFISLF PEILLIVLKN 1101 1150 ENSBTAP00000021914/1-1131 VRRRSTRSNL SCKKASDSLS TRPSVRPLLL RTFS--DESN IF BACU006453/1-1009 ---------- -------GLG ASAMSRPLAE RTVHLLVEQN AC ENSP00000332756/1-1132 VRRRSARRNL SCRRASDSLS ARPSVRPLLL RTFS--DESN VL bmy_07997T0/1-949 ---------- ---------- ---------- ---------- -- ENSTTRP00000003193/1-1134 VRRRSARRNL SCKKASDSLS TRPSVRPLLL RTFS--DESN IL