KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:15:44 2014  Check: 00 ..

 Name: ENSP00000064780/1-430     Len:    443  Check:  5052  Weight:  1.00
 Name: bmy_03684T0/1-358         Len:    443  Check:  6458  Weight:  1.00
 Name: ENSBTAP00000021927/1-437  Len:    443  Check:  8132  Weight:  1.00
 Name: BACU004972/1-433          Len:    443  Check:  2015  Weight:  1.00
 Name: ENSTTRP00000004360/1-429  Len:    443  Check:  3384  Weight:  1.00

//


                          1                                                   50
ENSP00000064780/1-430     -------MKP SLLCR---PL SCFLM--LLP WPLATLTSTT LWQCPPGEEP 
bmy_03684T0/1-358         --------MP CLSAFRSLSV SCPLFFQLLP WPLATATSTT PWPCPPGKEP 
ENSBTAP00000021927/1-437  STRWGLRMKL SPPPW---SL SCLLV--LLP WPLATATPTA PRQCPPGQEP 
BACU004972/1-433          --------MP CPSAFRSLSV SCPLFFQLLP WPLATATSTT PWPCPPGEEP 
ENSTTRP00000004360/1-429  -------MKL SPPHW---PL SCLLV--LLP WPLATATSTT PWPCPPGEEP 


                          51                                                 100
ENSP00000064780/1-430     DLDPGQGTLC RP-CPPGTFS AAWGSSPCQP HARCSLWRRL EAQVGMATRD 
bmy_03684T0/1-358         NL-----VVC PIRGPPCSLS SVLLDTPG-- ------YSRL ---------- 
ENSBTAP00000021927/1-437  NLEPGWGTLC RS-CPPGTFS ASWGSRPCQP HSRCSPRGRL EAQVGTATQD 
BACU004972/1-433          NLEPGQGTLC RS-CPPGTFS ASWGSSPCQP HSRCSPRGRL EAQVGTATRD 
ENSTTRP00000004360/1-429  NLEPGRGTLC RS-CPPGTFS ASWGSSPCQP HSRCSPQGRL EAQVGTATRD 


                          101                                                150
ENSP00000064780/1-430     TLCGDCWPGW FGPWGVPRVP CQPCSWAPLG THGCDEWGRR ARRGVEVAAG 
bmy_03684T0/1-358         -LRGGQRPQG LAILRAEEAL LRLADWSD-G QKGG-ERGRR ARRGVEVAAG 
ENSBTAP00000021927/1-437  ALCGDCQPGW FSPAEAPGVP CWPCSRTPLG GRSCFKRGRR ARRGVEVAAG 
BACU004972/1-433          TLCGNCQPGW FAPSEVPRVP CQPCSWTPLG TRGCYERGRR ARRGVEVAAG 
ENSTTRP00000004360/1-429  TLCGNCQPGW FAPSEVPHVP CRPCSWTPLG TRGCYERGRR ARRGMEVAAR 


                          151                                                200
ENSP00000064780/1-430     ASSGGETRQP GNGTRAGGPE ETAAQYAVIA IVPVFCLMGL LGILVCNLLK 
bmy_03684T0/1-358         ASGAGETRQP GNSTRAGSPE ETAAQYAVIA IVPIFCLMGL LGILVCNLLK 
ENSBTAP00000021927/1-437  AGGAAETRQP GNSTRAGSPE ETAAQYAVIA IVPIFCLMGL LGILVCNLLK 
BACU004972/1-433          ASGAGETRQP GNSTRAGSPE ETAAQYAVIA IVPIFCLMGL LGILVCNLLK 
ENSTTRP00000004360/1-429  ASGAGETRQP GNSTRAGSPE ETAAQYAVIA IVPIFCLMGL LGILVCNLLK 


                          201                                                250
ENSP00000064780/1-430     RKGYHCTAHK EVGPGPGGGG SGINPAYRTE DANEDTIGVL VRLITEKKEN 
bmy_03684T0/1-358         RKGYHCTAHK EVGPGPGGGG SGVNPAYQTE DANEDTIGVL VRLITEKKEN 
ENSBTAP00000021927/1-437  RKGYHCTAQK EVGPGPGGGG SGTNPACRPE DASEDTIGVL VRLITEKKEN 
BACU004972/1-433          RKGYHCTAHK EVGPGPGGGG SGVNPAYQTE DTNEDTIGVL VRLITEKKEN 
ENSTTRP00000004360/1-429  RKGYHCTAHK EVGPGPGGGG SGVNPAYHTD DANEDTIGVL VRLITEKKEN 


                          251                                                300
ENSP00000064780/1-430     AAALEELLKE YHSKQLVQTS HRPVSKLPPA PPNVPHICPH RHHLHTVQGL 
bmy_03684T0/1-358         AAALEELLKE YHSKQLAQTS HRPLPRLPPG PPSMPHVCPH RHHLHTVQGL 
ENSBTAP00000021927/1-437  AAALEELLKE YHSRQLVQTS HRPLPRLPPG PPSMPHVCPH RQHLHTVQGL 
BACU004972/1-433          AAALEELLKE YHSKQLAQTS HRPLPRLPPG PPSIPHVCPH RHHLHTVQDL 
ENSTTRP00000004360/1-429  AAALEELLKE YHSKQLVQTS HRPLPRLPPG PPSMPHVCPH RHHLHTVQGL 


                          301                                                350
ENSP00000064780/1-430     ASLSGPCCSR CSQKKWPEVL LSPEAVAATT PVPSLLPNPT RVPKAGAKAG 
bmy_03684T0/1-358         ASLSGPCCSR CSQ-KWPEVL LSPEAAAATT PTPRLLPNPA RAPKVGAKAG 
ENSBTAP00000021927/1-437  ASLSGPCCSR CSQKKWPEVL LSPEAAAATT PAPRLLPNPA RTPKAGAKAG 
BACU004972/1-433          ASLSGPCCSR CSQ-KWPEVL LSPEAAAATT PTPRLLPNPA RAPKVGAKAG 
ENSTTRP00000004360/1-429  ASLSGPCCSR CSQ-KWPEVL LSPEAAAATT PTPRLLPNPA RVPKVGAKAG 


                          351                                                400
ENSP00000064780/1-430     RQGEITILSV GRFRVARIPE QRTSSMVSEV KTITEAGPSW GDLPDSPQPG 
bmy_03684T0/1-358         RQGEITILSV GR-------- ---------- ---------- ---------- 
ENSBTAP00000021927/1-437  RQGEITILSV GRFRVARIPE QRVSSVASEV KTITEAGPSG GELPNSPRPG 
BACU004972/1-433          RQGEITILSV GRFRVARIPE QRTSSVASEV KTITEARPSG GDLPDSPQCG 
ENSTTRP00000004360/1-429  RQGEITILSV GRFRVARIPE QRMSSVASEV KTITEAGPSG GDLPDSPRRG 


                          401                                                450
ENSP00000064780/1-430     LPPEQQALLG SGGSRTKWLK PPAENKAEEN RYVVRLSESN LVI 
bmy_03684T0/1-358         ---EQWALLG SGGSHPKWLK PPAENKAE-- --VCPFSE-- --- 
ENSBTAP00000021927/1-437  LPSEQRALLG SGGSHAKWPK PPAENKAEEN RYVVRLSESN LVI 
BACU004972/1-433          LSSEQRALLG SGGSHPKWLK PPAENKAEEN RYVVRLSESN LVI 
ENSTTRP00000004360/1-429  LSSEQQTLLG SGGSHPKWLK SPAENKAEEN RYVVRLSESN LVI