KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:48 2014 Check: 00 .. Name: ENSP00000324944/1-495 Len: 495 Check: 6949 Weight: 1.00 Name: bmy_12645T0/1-348 Len: 495 Check: 505 Weight: 1.00 Name: ENSBTAP00000021975/1-490 Len: 495 Check: 8118 Weight: 1.00 Name: ENSTTRP00000008798/1-494 Len: 495 Check: 2270 Weight: 1.00 Name: BACU017610/1-494 Len: 495 Check: 3830 Weight: 1.00 // 1 50 ENSP00000324944/1-495 MAAEPQPSSL SYRTTGSTYL HPLSELLGIP LDQVNFVVCQ LVALFAAFWF bmy_12645T0/1-348 ---------- ---------- -------MVP IDS------- ---------- ENSBTAP00000021975/1-490 ---MQ-DGSG AYRTTGSTCL HPLSELLGIP LDQVNFVACQ LSALCAAFWF ENSTTRP00000008798/1-494 MAAEP-PPSL SYRTTGSTCL HPLSELLGIP LDQVNFVACQ LFALFAAFWF BACU017610/1-494 MAAEP-PPSF SYRTTGSTCL HPLSELLGIP LDQVNFVTCQ LFALFAAFWF 51 100 ENSP00000324944/1-495 RIYLRPGTTS SDVRHAVATI FGIYFVIFCF GWYSVHLFVL VLMCYAIMVT bmy_12645T0/1-348 ----RAGASD ---------- ---------- -W-------- ---------- ENSBTAP00000021975/1-490 RLYLSPGETS PAVRHAFATI FGIYFVIFCF GWYSVHLFVL VLMCYGIMVT ENSTTRP00000008798/1-494 RSYLSPGKTS PDVRHAFATI FGICFVIFCF GWYSVHLFVL VLMCYGIMVT BACU017610/1-494 RSYLSPGKTS PDVRHVFATI FGIYFVIFCF GWYSVHLFVL VLMCYGIMVT 101 150 ENSP00000324944/1-495 ASVSNIHRYS FFVAMGYLTI CHISRIYIFH YGILTTDFSG PLMIVTQKIT bmy_12645T0/1-348 ---------- ---------- ---------- ---------- PLMIVTQKIT ENSBTAP00000021975/1-490 ASISNIHRYS FFVAMGYLTI CHISRIYIFH YGILTTDFSG PLMIVTQKIT ENSTTRP00000008798/1-494 ASTSNIHRCS FFVAMGYLTI CHISRIYIFH YGILTTDFSG PLMIVTQKIT BACU017610/1-494 ASASNVHRYS FFVAMGYLTI CHISRIYIFH YGILTTDFSG PLMIVTQKIT 151 200 ENSP00000324944/1-495 TLAFQVHDGL GRRAEDLSAE QHRLAIKVKP SFLEYLSYLL NFMSVIAGPC bmy_12645T0/1-348 TLAFQVHDGL GRKAEDLSTE QRRLAVKAKP SFLEYVSYLL NFMSVIAGPC ENSBTAP00000021975/1-490 TLAFQVHDGL GRRAEDLSSE QHRLAVKAKP SFLEYVSYLL NFMSVIAGPC ENSTTRP00000008798/1-494 TLAFQVHDGL GRKAEDLSTE QRRLAVKAKP SFLEYVSYLL NFMSVIAGPC BACU017610/1-494 TLAFQVHDGL GRKAEDLSTE QHRLAVKAKP SFLEYVSYLL NFMSVIAGPC 201 250 ENSP00000324944/1-495 NNFKDYIAFI EGKHIHMKLL EVNWKRKGFH SLPEPSPTGA VIHKLGITLV bmy_12645T0/1-348 NNFKEYIAFI EGRHIHMKLL EVNWKEKGFH SLPEPSPTRA VIHKLCMTLV ENSBTAP00000021975/1-490 NNFKDYVAFI EGRHTHMKLL EVNWKEKGFH SLPEPSPTGA VMHKLCVTLV ENSTTRP00000008798/1-494 NNFKEYIAFI EGRHTHMKLL EVNWKEKGFH SLPEPSPTGA VIHKLCMTLV BACU017610/1-494 NNFKEYIAFI EGRHIHMKLL EVNWKEEGFH SLPEPSPTRA VIHKLCMTLV 251 300 ENSP00000324944/1-495 SLLLFLTLTK TFPVTCLVDD WFVHKASFPA RLCYLYVVMQ ASKPKYYFAW bmy_12645T0/1-348 SLLLFLTLTK TFPVTCLVDD WFVHKANFLT RLCYLYVVMQ ASKPKYYFAW ENSBTAP00000021975/1-490 SLLLFLTLTK TFPVTSLVDD WFVHEANFLT RLCYLYIVMQ ASKPKYYFAW ENSTTRP00000008798/1-494 SLLLFLTLTK TFPVTCLVDD WFVHKANFLT RLCYLYVVMQ ASKPKYYFAW BACU017610/1-494 SLLLFLTLTK TFPVTCLVDD WFVHKANFLT RLCYLYVVMQ ASKPKYYFAW 301 350 ENSP00000324944/1-495 TLADAVNNAA GFGFSGVDKN GNFCWDLLSN LNIWKIETAT SFKMYLENWN bmy_12645T0/1-348 TLADAVNNAA GFGFSGVDKN GNFCWDLLSN LNIWKIETAT SFKMYLENWN ENSBTAP00000021975/1-490 TLADAVNNAA GFGFSGVDKN GNFSWDLLSN LNIWKIETAT SFKMYVENWN ENSTTRP00000008798/1-494 TLADAVNNAA GFGFSGVDKN GNFCWDLLSN LNIWKIETAT SFKMYLENWN BACU017610/1-494 TLADAVNNAA GFGFSGVDKN GNFCWDLLSN LNIWKIETAT SFKMYLENWN 351 400 ENSP00000324944/1-495 IQTATWLKCV CYQRVPWYPT VLTFILSALW HGVYPGYYFT FLTGILVTLA bmy_12645T0/1-348 IQTATWLKRV CYERVPWYPT VLTFILSALW HGVYPGYYFT FLTGILVTLA ENSBTAP00000021975/1-490 IQTATWLKRV CYERVPWYPT VLTFILSALW HGVYPGYYFT FLTGILVTLA ENSTTRP00000008798/1-494 IQTATWLKRV CYERVPWHPT VLTFILSALW HGVYPGYYFT FLTGILVTLA BACU017610/1-494 IQTATWLKRV CYERVPWYPT VLTFILSALW HGVYPGYYFT FLTGILVTLA 401 450 ENSP00000324944/1-495 ARAVRNNYRH YFLSSRALKA VYDAGTWAVT QLAVSYTVAP FVMLAVEPTI bmy_12645T0/1-348 ARTVRNNYRH YFLSSKALKV FYDVVTWAVT QLAVSYTVAP FVMLAVEPTI ENSBTAP00000021975/1-490 ARTVRKNYRH YFLSSKALKA VYDIVTWAVT QLAVSYTVAP FVMLAVEPTI ENSTTRP00000008798/1-494 ARTVRNNYRH YFLSSKALKV VYDIVTWAAT QLAVSYTVAP FVMLAVEPTI BACU017610/1-494 ARTVRNNYRH YFLSSKALKV FYDIVTWAVT QLAVSYTVAP FVMLAVEPTI 451 500 ENSP00000324944/1-495 SLYKSMYFYL HIISLLIILF LPMKPQAHTQ RRPQTLNSIN KRKTD bmy_12645T0/1-348 SLYKSWQIES ISTDNLYVWF ---------- RWENV----- ----- ENSBTAP00000021975/1-490 SLYKSMYFYL HIISLLIILF LPIKPQAHNQ RWPQTLNSLN K-KMD ENSTTRP00000008798/1-494 SLYKSMYFYL HIISLLIILF LPIKPQAHNQ RRPQTLNSVN KKKID BACU017610/1-494 SLYKSMYFYL HVISLLIILF LPIKPQAHNQ RRPQTLNSVN KKKID