KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:49 2014 Check: 00 .. Name: ENSP00000317992/1-749 Len: 780 Check: 8905 Weight: 1.00 Name: ENSBTAP00000021980/1-746 Len: 780 Check: 1693 Weight: 1.00 Name: ENSTTRP00000002989/1-731 Len: 780 Check: 9989 Weight: 1.00 Name: bmy_10003T0/1-757 Len: 780 Check: 805 Weight: 1.00 Name: BACU018715/1-739 Len: 780 Check: 8472 Weight: 1.00 // 1 50 ENSP00000317992/1-749 MAAAGSRKRR LAELTVDEFL ASGFDSESES ESENSPQAET REAREAARSP ENSBTAP00000021980/1-746 MAAALSRKRR LEELTVDEFL ASGFDSESES EPEGAPEAET QAVRAAAREP ENSTTRP00000002989/1-731 MAAAWTRKRR LAELTVDEFL ASGFDSESDS EPEGAPEAET RAARGATRSP bmy_10003T0/1-757 MAC-----RR LAELTVDEFL ASGFDSESDS EPEGAPETET RAARGAARSP BACU018715/1-739 MAAAWTRKRR LAELTVDEFL ASGFDSESDS EPEGAPEAET RAARGAARSP 51 100 ENSP00000317992/1-749 DKPGGSPSAS RRKGRASEHK DQLSRLKDRD PEFYKFLQEN DQSLLNFSDS ENSBTAP00000021980/1-746 DGPGGSPLAS RRKGGASEHK DQLSRLKDKD PEFYKFLQEN DQSLLNFSDS ENSTTRP00000002989/1-731 DGPGGSPLAS RRKGRASEHK DQLSRLKDKD PEFYEFLQEN DQSLLNFSDS bmy_10003T0/1-757 DGPGGRPLAS RWKGRASEHK DQLSRLKDKD PEFYKFLQEN DQSLLHFSDS BACU018715/1-739 DGPGGSPLAS RCKGRASEHK DQLSRLKDKD PEFYKFLQEN DQSLLNFSDS 101 150 ENSP00000317992/1-749 DSSEEEEGPF HSLPDVLEEA SEEEDGAEEG EDGDRVPRGL KGK-KNSVPV ENSBTAP00000021980/1-746 DSSEDEEEQL HSLPNMLEEA SEEEE----- -EEDGVPRGP EGKRRDSVPV ENSTTRP00000002989/1-731 DSSEGEEEQL HSLPEALEEA SEEED----- -EEDGAPRGP MGRRRGSASV bmy_10003T0/1-757 DSSEDEGDRL HPLPDVLEEA SEEEE----- DEEDRAPRGP AGKRRDSASV BACU018715/1-739 DSSEDEEDRL HPLPDVLEEA SEEEE----- DEEDRAPRGP AGKRRDSASV 151 200 ENSP00000317992/1-749 TVAMVERWKQ AAKQRLTPKL FHEVVQAFRA AVATTRGDQE SAEANKFQVT ENSBTAP00000021980/1-746 TLAMVEKWKQ AAKQHLTPKL FHEVVQAFRA AVATTQGDEE GAETSKFQVT ENSTTRP00000002989/1-731 TLATVERWTQ AAKQHLTPKL FHEVVQAFRA AVATAQGEQE GTETSKFQVT bmy_10003T0/1-757 TLAMVERWKQ AAKQHLTPKL FHEVVQAFRA AVATTQGEQE GTETSKFQVT BACU018715/1-739 TLAMVERWKQ AAKQHLTPKL FHEVVQAFRA AVATTQGEQE GTETSKFQVT 201 250 ENSP00000317992/1-749 DSAAFNALVT FCIRDLIGCL QKLLFGKVAK DSSRMLQPSS SPLWGKLRVD ENSBTAP00000021980/1-746 DSAVFNALVT FCIRDLFGCL QKLLFGKAPK DSSRVLQPSS SPLWAKLRLD ENSTTRP00000002989/1-731 DSAVFNALVT FCIRDLFGCL QELLFRKAPK DSSRVRQPSS SSLWGKLRLD bmy_10003T0/1-757 DSAVFNALVT FCIRDLFGCL QELLFRKAPK DSSRVLQPSS SPLWGKLRLD BACU018715/1-739 DSAVFNALVT FCIRDLFGCL QELLFRKAPK DSSRVLQPSS SPLWGKLRLD 251 300 ENSP00000317992/1-749 IKAYLGSAIQ -LVSCLSETT VLAAVLRHIS VLVPCFLTFP KQCRMLLKRM ENSBTAP00000021980/1-746 VKAYLSSVIQ -LVACVAEAT VAAAILQHVG SSVPYYLTFP KQCRMLLKRM ENSTTRP00000002989/1-731 IKAYLSSVTQ XXXXXXXXXX XXXXXFQHVS SSVPYYL-FP KQC-MLLKRM bmy_10003T0/1-757 IKAYLGSVIQ -LVACVAEAT VVAAVLQHVS SSVPYYLTFP KQCRMLLKRM BACU018715/1-739 IKAYLSSVIQ -LVACVAEAT VVAAVLQHVS SCVPYCLTFP KQCRMLLKRM 301 350 ENSP00000317992/1-749 VIVWSTGEES LRVLAFLVLS RVCRHKKDTF LGPVLKQMYI TYVRNCKFTS ENSBTAP00000021980/1-746 VVLWSTGEET LRVLAFVVLI KVCRHKKDVF LSPVLKQMYI TYVRNCKFTS ENSTTRP00000002989/1-731 VVLWGTGEET LRVLAFLVLV KVCRHKKDVF LSPVLKQMYI TYVRNCRFTS bmy_10003T0/1-757 VVLWGTGEET LRVLAFLVLV KVCRHKKDVF LSPVLKQMYI TYVRNCRFTS BACU018715/1-739 VVLWGTGEET LRVLAFLVLV KVCRHKKDVF LSPVLKQMYI TYVRNCRFTS 351 400 ENSP00000317992/1-749 PGALPFISFM QWTLTELLAL EPGVAYQHAF LYIRQLAIHL RNAMTTRKKE ENSBTAP00000021980/1-746 PSTLPLINFM QRTLTELLAL DTGVAYQHAF LYIRQLAIHL RNAMTTRRKE ENSTTRP00000002989/1-731 PSTLPLVNFM QRTLTELLAL DAGVAYQHAF LYIRQLAIHL RNAMTTRKKE bmy_10003T0/1-757 PSTLPLVSFM QRTLTELLAL DAGVAYQHAF LYIRQLAIHL RNAMTMRKKE BACU018715/1-739 PSTLPLVSFM QRTLTELLAL DAGVAYQHAF LYIRQLAIHL RNAMTTRKKE 401 450 ENSP00000317992/1-749 TYQSVYNWQY VHCLFLWCRV LSTAGPSEAL QPLVYPLAQV IIGCIKLIPT ENSBTAP00000021980/1-746 TYQSVYNWQF VHCLYLWCRA LSTICPSEAL QPLIYPLSQV VIGCIKLVPT ENSTTRP00000002989/1-731 TRQSVYSWQF VHCLHLWGRA LSTICPSEAL QPLIYPLSQV VIGCIKLVPT bmy_10003T0/1-757 TYQSVYNWQF VHCLYLWCRA LSTICPSEAL QPLIYPLSQV VIGCIKLVPT BACU018715/1-739 TYQSVYNWQF VHCLYLWCRA LSTICPSEAL QPLIYPLSQV VIGCIKLVPT 451 500 ENSP00000317992/1-749 ARFYPLRMHC IRALTLLSGS SGAFIPVLPF ILE------- ---------- ENSBTAP00000021980/1-746 ARFYPLRMHC VRALTLLSES TGTFIPVLPF ILE------- ---------- ENSTTRP00000002989/1-731 ARFYPLRMHC VRTLTLLSES TGTFIPVLPF ILE------- ---------- bmy_10003T0/1-757 ARFYPLRMHC VRALTLLSES TGTFIPVLPF ILEMGLQRPR VLGWAGWADG BACU018715/1-739 ARFYPLRMHC VRALTLLSES TGTFIPVLPF ILE------- ---------- 501 550 ENSP00000317992/1-749 ----MFQQVD FNRKPGRMSS KPINFSVILK LSNVNLQEKA YRDGLVEQLY ENSBTAP00000021980/1-746 ----IFQQVD FNRRPGRISS RPINFAVILK LSKVNLQEKA YRDGLVEQLY ENSTTRP00000002989/1-731 ----IFQQVD FNRRPGRMSS RPINFAVILK LSKVNLQEKA YRDGLVEQLY bmy_10003T0/1-757 SLGQIFQQVD FNRRPGRMSS RPINFAVILK LSKVNLQEKA YRDGLVEQLY BACU018715/1-739 ----IFQQVD FNRRPGRMSS RPINFAVILK LSKVNLQEKA YRDGLVEQLY 551 600 ENSP00000317992/1-749 DLTLEYLHSQ AHCIGFPELV LPVVLQLKSF LRECKVANYC RQVQQLLGKV ENSBTAP00000021980/1-746 DLTLEYLHSQ AHSIAFPELV LPAVLQLKSF LRECKVANYC RQVRQLLEKV ENSTTRP00000002989/1-731 DLSLEYLHGQ AHSIAFPELA LPAVLQLKSF LRECKVANYC RQVRQLLEKV bmy_10003T0/1-757 DLSLEYLHSQ AHSIAFPELA LPAVLQLKSF LRECKVANYC RQVRQLLEKV BACU018715/1-739 DLSLEYLHSQ AHSIAFPELA LPAVLQLKSF LRECKVANYC RQVRQLLEKV 601 650 ENSP00000317992/1-749 QENSAYICSR RQRVSFGVSE QQAVEAWEKL TREEGTPLTL YYSHWRKLRD ENSBTAP00000021980/1-746 QENAEHIRSV RQKVSFGVSD QRAVDAWEKR TREEGTPLTK YYSQWRKLRD ENSTTRP00000002989/1-731 QENAEHIRRL RQRVSFGVSD QRAVDAWEKR TREEGTPLTK YYSQWRKLRD bmy_10003T0/1-757 QENAEHVRSL RQRASFGVSD QRAVDAWEKR TREEGTPLTK YYSQWRKLRD BACU018715/1-739 QENAEHVRSL RQRVSFGVSD QRAVDAWEKR TREEGTPLTK YYSQWRKLRD 651 700 ENSP00000317992/1-749 REIQLEISGK ERLEDLNFPE IKRRKMADRK DEDRKQFKDL FDLNSS---- ENSBTAP00000021980/1-746 REIQLEISGK ERLEDLNFPE VKRRKVGDRK DEDRAEFKDL FDLESD---- ENSTTRP00000002989/1-731 REIQLEISGK ERLEDLNFPE VKRRKVADRK SEDRAEFKDL FDLDVA---- bmy_10003T0/1-757 REIQLEISGK ERLEDLNFPE VKRRKAADGK SEDRAEFKDL FDLDSAEDED BACU018715/1-739 REIQLEISGK ERLEDLNFPE VKRRKAADRK DEDRAEFKDL FDLDSA--ED 701 750 ENSP00000317992/1-749 EEDDTEGFSE RGILRPLSTR HGVEDDEED- -EEEGEEDSS NSEDGDPDAE ENSBTAP00000021980/1-746 DEDDAPDFTK RGMPGSPGAW QKVEEEDDDS SSSSGEEEVS KSEDGSPDTE ENSTTRP00000002989/1-731 EDVDAEDFPE RGTPGSPRA- ---------- -----GEEVS GSEDGNPDTE bmy_10003T0/1-757 EDEDAPDFPE RGTPGSPRAW QRREE----- -----EEEVS DSEDGSPDTE BACU018715/1-739 EDEDAPDSPE RGTPGSPRAW QRREE----- -----EEEVS DSEDGSPDTE 751 800 ENSP00000317992/1-749 AGLAPGELQQ LAQGPEDELE DLQLSEDD-- ENSBTAP00000021980/1-746 AGLDPQELWQ LAQGPEDELQ DLQLSEED-- ENSTTRP00000002989/1-731 AGPDPQEPWR LAQGPEDELQ DLELSEDEDD bmy_10003T0/1-757 AGPDPQEPWQ LAQGPEDELQ DLELSEDD-- BACU018715/1-739 AGPDPQEPWR LAQGPEDELQ DLELSEDD--