KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:50 2014 Check: 00 .. Name: bmy_17725T0/1-352 Len: 701 Check: 2538 Weight: 1.00 Name: ENSP00000420736/1-679 Len: 701 Check: 9441 Weight: 1.00 Name: ENSTTRP00000000128/1-673 Len: 701 Check: 8113 Weight: 1.00 Name: BACU015121/1-673 Len: 701 Check: 3854 Weight: 1.00 Name: ENSBTAP00000021993/1-674 Len: 701 Check: 9630 Weight: 1.00 // 1 50 bmy_17725T0/1-352 MIDA------ ---------- ---------- ---------- -----TPRTQ ENSP00000420736/1-679 MFQ-----CV FSSSVLQPHS TSCLFKHLFY HSATPASQKQ PEPIYSKKTE ENSTTRP00000000128/1-673 MMQESGTETK SNGSAIQNGS SGG--NHLLE CGGLREGRPN GE---TPAVD BACU015121/1-673 MMQESGTETK SNGSAIQNGS SGG--NHLLE CGGLREGRPN GE---TPAVD ENSBTAP00000021993/1-674 MMQESGTETK SNGSAIQNGS SGG--NHLLE CGSLREGRSN GE---TPAVD 51 100 bmy_17725T0/1-352 TG-------- ---------- ---------- ---------- ---------- ENSP00000420736/1-679 IQRQTVRAPF AKL-FIFSAL QVARQLLLQQ QQQQQVSGLK SPKRNDKQPA ENSTTRP00000000128/1-673 VG----AADL AHV-QQQQAL QVARQLLL-Q QQQQQVSGLK SPKRNDKQPA BACU015121/1-673 VG----AADL AHV-QQQQAL QVARQLLL-Q QQQQQVSGLK SPKRNDKQPA ENSBTAP00000021993/1-674 VG----TADL AHVQQQQQAL QVARQLLLQQ QQQQQVSGLK SPKRNDKQPA 101 150 bmy_17725T0/1-352 ---------- ---------- ---------- ---------- ---------- ENSP00000420736/1-679 LQVPVSVAMM TPQVITPQQM QQILQQQVLS PQQLQVLLQQ QQALMLQQQQ ENSTTRP00000000128/1-673 LQVPVSVAMM TPQVITPQQM QQILQQQVLS PQQLQVLLQQ QQALMLQQQQ BACU015121/1-673 LQVPVSVAMM TPQVITPQQM QQILQQQVLS PQQLQVLLQQ QQALMLQQQQ ENSBTAP00000021993/1-674 LQVPVSVAMM TPQVITPQQM QQILQQQVLS PQQLQVLLQQ QQALMLQQQQ 151 200 bmy_17725T0/1-352 VHAVFVKRIP EFKIELL--- ---------- ---------- ---------- ENSP00000420736/1-679 LQEFYKKQQE QLQLQLLQQQ HAGKQPKEQQ QVATQQLAFQ QQLLQMQQLQ ENSTTRP00000000128/1-673 LQEFYKKQQE QLQLQLL-QQ HAGKQPKEQQ QVATQQLAFQ QQLLQMQQLQ BACU015121/1-673 LQEFYKKQQE QLQLQLL-QQ HAGKQPKEQQ QVSTQQLAFQ QQLLQMQQLQ ENSBTAP00000021993/1-674 LQEFYKKQQE QLQLQLL-QQ HAGKQPKEQQ QVATQQLAFQ QQLLQMQQLQ 201 250 bmy_17725T0/1-352 --------RQ RIFI------ ---------- ---------- ---------- ENSP00000420736/1-679 QQHLLSLQRQ GLLTIQPGQP ALPLQPLAQG MIPTELQQLW KEVTSAHTAE ENSTTRP00000000128/1-673 QQHLLSLQRQ GLLTIQPGQP ALPLQPLAQG MIPTELQQLW KEVTSAHTTE BACU015121/1-673 QQHLLSLQRQ GLLTIQPGQP ALPLQPLAQG MIPTELQQLW KEVTSAHTTE ENSBTAP00000021993/1-674 QQHLLSLQRQ GLLTIQPGQP ALPLQPLTQG MIPTELQQLW KEVTSAHTTE 251 300 bmy_17725T0/1-352 ---------- ---------- ---------- ---------- ---------- ENSP00000420736/1-679 ETTGNNHSSL DLTTTCVSSS APSKTSLIMN PHASTNGQLS VHTPKRESLS ENSTTRP00000000128/1-673 ETTGNNHSSL DLTTTCVSSS APSKTSLIMN PHASTNGQLS VHTPKRESLS BACU015121/1-673 ETTGNNHSSL DLTTTCVSSS APSKTSLIMN PHASTNGQLS VHTPKRESLS ENSBTAP00000021993/1-674 ETTGNNHSSL DLTTTCVSSS APSKTSLIMN PHASTNGQLS VHTPKRESLS 301 350 bmy_17725T0/1-352 ---------- ---------- ---------- ---------- --GRATGKHR ENSP00000420736/1-679 HEEHPHSHPL YGHGVCKWPG CEAVCEDFQS FLKHLNSEHA LDDRSTAQCR ENSTTRP00000000128/1-673 HEEHPHSHPL YGHGVCKWPG CEAVCEDFQS FLKHLNSEHA LDDRSTAQCR BACU015121/1-673 HEEHPHSHPL YGHGVCKWPG CEAVCEDFQS FLKHLNSEHA LDDRSTAQCR ENSBTAP00000021993/1-674 HEEHPHSHPL YGHGVCKWPG CEAVCEDFQS FLKHLNSEHA LDDRSTAQCR 351 400 bmy_17725T0/1-352 ---------- ---------- ---------- ---------- LNLVSSVTLS ENSP00000420736/1-679 VQMQVVQQLE LQLAKDKERL QAMMTHLHVK STEPKAAPQP LNLVSSVTLS ENSTTRP00000000128/1-673 VQMQVVQQLE LQLAKDKERL QAMMTHLHVK STEPKTAPQP LNLVSSVTLS BACU015121/1-673 VQMQVVQQLE LQLAKDKERL QAMMTHLHVK STEPKTAPQP LNLVSSVTLS ENSBTAP00000021993/1-674 VQMQVVQQLE LQLAKDKERL QAMMTHLHVK STEPKTAPQP LNLVSSVTLS 401 450 bmy_17725T0/1-352 KSASEASPQS LPHTPTTPTA PITPVTQGPS VITTTSMHTV GPIRRRYSDK ENSP00000420736/1-679 KSASEASPQS LPHTPTTPTA PLTPVTQGPS VITTTSMHTV GPIRRRYSDK ENSTTRP00000000128/1-673 KSASEASPQS LPHTPTTPTA PITPVTQGPS VITTTSMHTV GPIRRRYSDK BACU015121/1-673 KSASEASPQS LPHTPTTPTA PITPVTQGPS VITTTSMHTV GPIRRRYSDK ENSBTAP00000021993/1-674 KSASEASPQS LPHTPTTPTA PITPATQGPS VITTTSMHTV GPIRRRYSDK 451 500 bmy_17725T0/1-352 YNVPISS-DI AQNQEFYKNA EVRPPFTYAS LIRQAILESP EKQLTLNEIY ENSP00000420736/1-679 YNVPISSADI AQNQEFYKNA EVRPPFTYAS LIRQAILESP EKQLTLNEIY ENSTTRP00000000128/1-673 YNVPISSADI AQNQEFYKNA EVRPPFTYAS LIRQAILESP EKQLTLNEIY BACU015121/1-673 YNVPISSADI AQNQEFYKNA EVRPPFTYAS LIRQAILESP EKQLTLNEIY ENSBTAP00000021993/1-674 YNVPISS-DI AQNQEFYKNA EVRPPFTYAS LIRQAILESP EKQLTLNEIY 501 550 bmy_17725T0/1-352 NWFTRMFAYF RRNAATWKGA IRTNLSLHKC FIRVEDEFGS FWTVDDEEFK ENSP00000420736/1-679 NWFTRMFAYF RRNAATWKNA VRHNLSLHKC FVRVENVKGA VWTVDEVEF- ENSTTRP00000000128/1-673 NWFTRMFAYF RRNAATWKXX XXXXXXXXKC FVRVENVKGA VWTVDEVEF- BACU015121/1-673 NWFTRMFAYF RRNAATWKNA VRHNLSLHKC FVRVENVKGA VWTVDEVEF- ENSBTAP00000021993/1-674 NWFTRMFAYF RRNAATWKNA VRHNLSLHKC FVRVENVKGA VWTVDEVEF- 551 600 bmy_17725T0/1-352 RGRHIQRGRP RKYCPDENFD ELVAHNPSLI KNMQTSHAYC TPLNAALQAS ENSP00000420736/1-679 -----QKRRP QK-------- --ISGNPSLI KNMQSSHAYC TPLNAALQAS ENSTTRP00000000128/1-673 -----QKRRP QK-------- --ISGNPSLI KNMQTSHAYC TPLNAALQAS BACU015121/1-673 -----QKRRP QK-------- --ISGNPSLI KNMQTSHAYC TPLNAALQAS ENSBTAP00000021993/1-674 -----QKRRP QK-------- --ISGNPSLI KNMQTSHAYC TPLNAALQAS 601 650 bmy_17725T0/1-352 MAENSIPLYT TASMGNPTLG NLASAIREEL NGAMEHTNSN ESDSSPGRSP ENSP00000420736/1-679 MAENSIPLYT TASMGNPTLG NLASAIREEL NGAMEHTNSN ESDSSPGRSP ENSTTRP00000000128/1-673 MAENSIPLYT TASMGNPTLG NLASAIREEL NGAMEHTNSN ESDSSPGRSP BACU015121/1-673 MAENSIPLYT TASMGNPTLG NLASAIREEL NGAMEHANSN ESDSSPGRSP ENSBTAP00000021993/1-674 MAENSIPLYT TASMGNPTLG NLASAIREEL NGAMEHTNSN ESDSSPGRSP 651 700 bmy_17725T0/1-352 MQAVHPVHVK EEPLDPEEAE GPLSLVTTAN HSPDFDHDRD YEDEPVNEDM ENSP00000420736/1-679 MQAVHPVHVK EEPLDPEEAE GPLSLVTTAN HSPDFDHDRD YEDEPVNEDM ENSTTRP00000000128/1-673 MQAVHPVHVK EEPLDPEEAE GPLSLVTTAN HSPDFDHDRD YEDEPVHEDV BACU015121/1-673 MPAVHPVHVK EEPLDPEEAE GPLSLVTTAN HSPDFDHDRD YEDEPVNEDM ENSBTAP00000021993/1-674 LQAVHPVHVK EEPLDPEEAE GPLSLVTTAN HSPDFDHDRD YEDEPVNEDM 701 750 bmy_17725T0/1-352 E ENSP00000420736/1-679 E ENSTTRP00000000128/1-673 E BACU015121/1-673 E ENSBTAP00000021993/1-674 E