KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:51 2014 Check: 00 .. Name: ENSTTRP00000011778/1-736 Len: 741 Check: 9482 Weight: 1.00 Name: ENSBTAP00000022002/1-737 Len: 741 Check: 965 Weight: 1.00 Name: ENSP00000362687/1-737 Len: 741 Check: 1421 Weight: 1.00 Name: BACU001948/1-692 Len: 741 Check: 2306 Weight: 1.00 Name: bmy_04414T0/1-679 Len: 741 Check: 9247 Weight: 1.00 // 1 50 ENSTTRP00000011778/1-736 -MPGKLLWGD IMELEAPLEE TESQRKERQK SDRRKSRHHC DSDEKSETRE ENSBTAP00000022002/1-737 -MPGKLLWGD IMELEAPLEE TESQRKERQK SDRRKSRHHY DSDEKSETRE ENSP00000362687/1-737 -MPGKLLWGD IMELEAPLEE SESQKKERQK SDRRKSRHHY DSDEKSETRE BACU001948/1-692 MMPGKLLWGD IMELEAPLEE TESQRKERQK SDRRKSRHHY DSDEKSETRE bmy_04414T0/1-679 MMPGKLLWGD IMELEAPLEE TESQRKERQK SDRRKSRHHY DSDEKSETRE 51 100 ENSTTRP00000011778/1-736 NGVADDLDAP KPKKTKMKEK LNGGTEEGCN RLSDEFSKSR KSRRKDLSNG ENSBTAP00000022002/1-737 NGVTDDLDAP KPKKAKMKEK LNGDTEEGCD RLSDEFSKSH KPRRKDLSNG ENSP00000362687/1-737 NGVTDDLDAP KAKKSKMKEK LNGDTEEGFN RLSDEFSKSH KSRRKDLPNG BACU001948/1-692 NGVADDLDAP KPKKAKTKEK LNGDTEEGCN RLSDEFSKSC KSRRKDLSNG bmy_04414T0/1-679 NGVADDLDAP KPKKAKMKEK LNGDTEEGCN RLSDEFSKSR KSRRKDLSNG 101 150 ENSTTRP00000011778/1-736 DIDEYEKKSK RVSSLDSSTH KSSENKLEET LTREQKEGAF SNFPISEETI ENSBTAP00000022002/1-737 DIDEHEKRSK RVSSLNSSTH KSSDNKVEET LTREQKEGAF SNFPISEETI ENSP00000362687/1-737 DIDEYEKKSK RVSSLDTSTH KSSDNKLEET LTREQKEGAF SNFPISEETI BACU001948/1-692 DIDEYEKKSK RVSSLDSSTH KSSENKLEET LTREQKEGAF SNFPISEETI bmy_04414T0/1-679 DIDEYEKKSK RVSSLDSSTH KSSDNKLEET LTREQKEGAF SNFPISEETI 151 200 ENSTTRP00000011778/1-736 KLLKGRGVTY LFPIQVKTFG PVYEGKDLIA QARTGTGKTF SFAIPLIERL ENSBTAP00000022002/1-737 KLLKGRGVTY LFPIQVKTFG PVYEGKDLIA QARTGTGKTF SFAIPLIERL ENSP00000362687/1-737 KLLKGRGVTY LFPIQVKTFG PVYEGKDLIA QARTGTGKTF SFAIPLIERL BACU001948/1-692 KLLKGRGVTY LFPIQVKTFG PVYEGKGLIA QARTGTGKTF SFAIPLIERL bmy_04414T0/1-679 KLLKGRGVTY LFPIQVKTFG PVYEGKDLIA QARTGTGKTF SFAIPLIERL 201 250 ENSTTRP00000011778/1-736 QRNQETIKKS RSPKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022002/1-737 QRNQETIKKS RSPKVLVLAP TRELANQVAK DFKDVTRKLS VACFYGGTSY ENSP00000362687/1-737 QRNQETIKKS RSPKVLVLAP TRELANQVAK DFKDITRKLS VACFYGGTSY BACU001948/1-692 QRNQETIKKS RSPKVLVLAP TRELANQVAK DFKDITRKLS VACFYGGTSY bmy_04414T0/1-679 QRNQETIKKS RSPKVLVLAP TRELANQVAK DFKDITRKLS VACFYGGTSY 251 300 ENSTTRP00000011778/1-736 XXXXNHIRNA IDILVETPGR IKDHLQSGRL DLSKLRHVVL DEVDQMLDLG ENSBTAP00000022002/1-737 QSQINHIRNG IDILVGTPGR IKDHLQSGRL DLSKLRHVVL DEVDQMLDLG ENSP00000362687/1-737 QSQINHIRNG IDILVGTPGR IKDHLQSGRL DLSKLRHVVL DEVDQMLDLG BACU001948/1-692 QSQINHIRNG IDILVGTPGR IKDHLQSGRL DLSKLRHVVL DEVDQMLDLG bmy_04414T0/1-679 QSQINHIRNG IDILVGTPGR IKDHLQSGRL DLSKLRHVVL DEVDQMLDLG 301 350 ENSTTRP00000011778/1-736 FAEQVEDIIH ESYKTDSEDN PQTLLFSATC PQWVYKVAKK YMKSRYEQVD ENSBTAP00000022002/1-737 FAEQVEDILH ESYKTDSEDN PQTLLFSATC PQWVYKVAKK YMKSRYEQVD ENSP00000362687/1-737 FAEQVEDIIH ESYKTDSEDN PQTLLFSATC PQWVYKVAKK YMKSRYEQVD BACU001948/1-692 FAEQVEDIIH ESYKTDSEDN PQTLLFSATC PQWVYKVAKK YMKSRYEQVD bmy_04414T0/1-679 FAEQVEDIIH ESYKTDSEDN PXTLXFSATC PQWVYKVAKK YMKSRXEQVD 351 400 ENSTTRP00000011778/1-736 LVGKMTQKAA TTVEHLAIQC HWSQRPAVIG DVLQVYSGS- -RAIIFCETK ENSBTAP00000022002/1-737 LVGKMTQKAA TTVEHLAIQC HWSQRPAVIG DVLQVYSGSE GRAIIFCETK ENSP00000362687/1-737 LVGKMTQKAA TTVEHLAIQC HWSQRPAVIG DVLQVYSGSE GRAIIFCETK BACU001948/1-692 LVGKMTQKAA TTVEHLAIQC HWSQRPAVIG DVLQVYSGSE GRAIIFCETK bmy_04414T0/1-679 LVGKMTQKAA TTVEHLAIQC HWSQRPAVIG DVLQVYSGSE GRAIIFCETK 401 450 ENSTTRP00000011778/1-736 KNVTEMAMNP XXXXNAQCLH GDIAQSQREI TLKGFREGSF KVLVATNVAA ENSBTAP00000022002/1-737 KNVTEMAMNP HIKQNAQCLH GDIAQSQREI TLKGFREGSF KVLVATNVAA ENSP00000362687/1-737 KNVTEMAMNP HIKQNAQCLH GDIAQSQREI TLKGFREGSF KVLVATNVAA BACU001948/1-692 KNVTEMAMNP HIKQNAQCLH GDIAQSQREI TLKGFREGSF KVLVATNVAA bmy_04414T0/1-679 KNVTEMAMNP HIKQNAQCLH GDIAQSQREI TLKGFREGSF KVLVATNVAA 451 500 ENSTTRP00000011778/1-736 RGLDIPEVDL VIQSSPPQDV ESYIHRSGRT GRAGRTGICI CFYQPRERGQ ENSBTAP00000022002/1-737 RGLDIPEVDL VIQSSPPQDV ESYIHRSGRT GRAGRTGICI CFYQPRERGQ ENSP00000362687/1-737 RGLDIPEVDL VIQSSPPQDV ESYIHRSGRT GRAGRTGICI CFYQPRERGQ BACU001948/1-692 RGLDIPEVDL VI-------- ---------- ---------- QSSPPQ---- bmy_04414T0/1-679 RGLDIPE--- --------DV ESYIHRSGRT GRAGRTGICI CFYQPRERGQ 501 550 ENSTTRP00000011778/1-736 LRYVEQKAGI TFKRVGVPST MDLVKSKSMD AIRSLACVSY AAVDFFRPSA ENSBTAP00000022002/1-737 LRYVEQKAGI TFKRVGVPST MDLVKSKSMD AIRSLASVSY AAVDFFRPSA ENSP00000362687/1-737 LRYVEQKAGI TFKRVGVPST MDLVKSKSMD AIRSLASVSY AAVDFFRPSA BACU001948/1-692 --------GI TFKRVGVPST MDLVKSKSMD AIRSLASVSY AAVDFFRPSA bmy_04414T0/1-679 LRYVEQKAGI TFKRVGVPST MDLVKSKSMD AIRSLASVSY AAVDFFRPSA 551 600 ENSTTRP00000011778/1-736 QRLIEEKGAV DALAAALAHI SGASSFEPRS LITSDKGFVT MTLESPEEIQ ENSBTAP00000022002/1-737 QRLIEEKGAV DALAAALAHI SGASSFEPRS LITSDKGFVT MTLESPEEIQ ENSP00000362687/1-737 QRLIEEKGAV DALAAALAHI SGASSFEPRS LITSDKGFVT MTLESLEEIQ BACU001948/1-692 QRLIEEKGAV DALAAALAHI SGASSFEPRS LITSDKGFVT MTLESPEEIQ bmy_04414T0/1-679 QRLIEEKGAV DALAAALAHI SGASSFEPRS LITSDK---- ---------- 601 650 ENSTTRP00000011778/1-736 DVSCAWKELN RKLSSNAVSQ ITRMCLLKGN MGVCFDVPTT ESERLQAEWH ENSBTAP00000022002/1-737 DVSCAWKELN RKLSSNAVSQ ITRMCLLKGN MGVCFDVPTT ESERLQAEWH ENSP00000362687/1-737 DVSCAWKELN RKLSSNAVSQ ITRMCLLKGN MGVCFDVPTT ESERLQAEWH BACU001948/1-692 DVSCAWKELN RKLSSNAVSQ ITRMCLLKGN MGVCFDVPTT ESESLQAEWH bmy_04414T0/1-679 ---------- ---------- ---------- -GVCFDVPTT ESERLQAEWH 651 700 ENSTTRP00000011778/1-736 DSDWVLSVPA KLPEIEEYYD GSTSSNSRQR SGWSSGRSGR SGRSGGRSGG ENSBTAP00000022002/1-737 DSDWILSVPA KLPEIEEYYD GNTSSNSRQR SGWSSGRLGR SGRSGGRSGG ENSP00000362687/1-737 DSDWILSVPA KLPEIEEYYD GNTSSNSRQR SGWSSGRSGR SGRSGGRSGG BACU001948/1-692 DSDWVLSVPA KLPEIEEYYD GNTSSNSRQR SGWS------ SGRSGGRPGG bmy_04414T0/1-679 DSDWVLSVPA KLPEIEEYYD GNTSSNSRQR SGWS------ SGRSGGRPGG 701 750 ENSTTRP00000011778/1-736 RSGRQSRQGS RSGSRQDGRR RSGNRNRSRS GGRKRSFDW- - ENSBTAP00000022002/1-737 RSGRQSRQGS RTGSRQDGRR RSGNRNRSRS GGHKRNFD-- - ENSP00000362687/1-737 RSGRQSRQGS RSGSRQDGRR RSGNRNRSRS GGHKRSFD-- - BACU001948/1-692 RSGRQSRQGS RSGSRQDGRR RSGNRNRSRS GGHKRSFD-- - bmy_04414T0/1-679 RSGRQSRQGS RSGSRQDGRR RXGNRNRSRS GGHKRSFDWD S