KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:53 2014 Check: 00 .. Name: ENSP00000457353/1-379 Len: 467 Check: 5169 Weight: 1.00 Name: ENSBTAP00000022021/1-372 Len: 467 Check: 1446 Weight: 1.00 Name: ENSTTRP00000010793/1-420 Len: 467 Check: 8179 Weight: 1.00 Name: bmy_01927T0/1-246 Len: 467 Check: 1873 Weight: 1.00 Name: BACU009226/1-123 Len: 467 Check: 6583 Weight: 1.00 // 1 50 ENSP00000457353/1-379 -MARVGPGRA GVSCQGRGRG RGGSGQRRPP TWEISDSDAE DSAGSEAAAR ENSBTAP00000022021/1-372 -MARPGPGRA -------GSA RRGLGERRPP TWEISDSDAE GPAGVETPAR ENSTTRP00000010793/1-420 -VARAGSGRA -------GGS RRGRGL-QPP TWEISDSDIE GPAGEEAAAR bmy_01927T0/1-246 ---------- ---------M EGG------- ---------- ---------- BACU009226/1-123 MAARASSG-- -------GSC QGG------- ---------- ---------- 51 100 ENSP00000457353/1-379 ARDPAGERRA AAEALRLLRP EQVLKRLAVC VDTAILEDAG ADVLMEALEA ENSBTAP00000022021/1-372 GRDPAEERRP AAEALRRLRP GQAVRRLAVL VDPAVLEDAG ADTLMEALHA ENSTTRP00000010793/1-420 VRDPAEEHRA AAEVVRRLRP EQAVRRLAVL MDPAILEDAG ADILMEALDA bmy_01927T0/1-246 ---------- ---------- ---------- ---------- ---------- BACU009226/1-123 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000457353/1-379 LGCECRIEPQ RPARSLRWTR ASPDPCPRSL PPEVWAAGEQ ELLLLLEPEE ENSBTAP00000022021/1-372 LGCEPRAEPQ RPARSLRWSR ESPDPCPRGV PPEVWAEDEP HVLLLLEPEE ENSTTRP00000010793/1-420 LSCECRVEPE RPAWSLGWSR VKPDLCSLSV PPEVWAADEQ DRLLLLEPEE bmy_01927T0/1-246 ---------- ---------- ---------- ---------- ------EPE- BACU009226/1-123 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000457353/1-379 FLQGVATLTQ ISGPTHWVPW ISPETTARPH LAVIGLDAYL W--------- ENSBTAP00000022021/1-372 FVRGVLQLTQ VRGPTCPVPW VTPESPARPH LAVIGLDAYL W--------- ENSTTRP00000010793/1-420 FLQGVVQLTQ TCGPTCSVPR ISPESPACLH LAVIG-DVYL WYRSPHPPAC bmy_01927T0/1-246 ---------- ---------- ---------- ----GRSPLH R--------- BACU009226/1-123 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000457353/1-379 ---------- ---------- ---------- SRQHVSRGTQ QPESPKVAGA ENSBTAP00000022021/1-372 ---------- ---------- ---------- SQKPSAQETQ QPEHPAVTRA ENSTTRP00000010793/1-420 LGWEFGRGGL WGRGELMEGR EPEGWLPLHR SYQSSTQEAW QPERLVVTRA bmy_01927T0/1-246 ---------- ---------- ---------- SYQSSTQETW QPERPAVARA BACU009226/1-123 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000457353/1-379 EVAVSWPEVE E-----ALVL LQLWANLDVL LVASWQELSR HVCAVTKALA ENSBTAP00000022021/1-372 EVAVGWPEVE E-----ALVR LQLWANVDVL LVASWQELSQ HVCAFTKALA ENSTTRP00000010793/1-420 -VAVGWPEVE EVRLGWALVL LQLWVNVDVL LVASW-ELSQ HVCAFTKALT bmy_01927T0/1-246 KVAVGWPEVE E-----ALVL LQLWANVDVL LVASWQELSQ HVCAFTKALT BACU009226/1-123 ---------- ---------- ---------- ---SWL---- ---------- 301 350 ENSP00000457353/1-379 QYPLKQ---- ---------- ---------- ---------- --YRES---- ENSBTAP00000022021/1-372 QRPFKQ---- ---------- ---------- ---------- --ARES---- ENSTTRP00000010793/1-420 QRPFKCVTL- ---------- ---------- ---------- --QREG--GG bmy_01927T0/1-246 QRPFKCVTLT LLGAAAGGVG VPGGVAPLWP LEQRGLRVLL SWGRGAQESP BACU009226/1-123 ---------- ---------- ---------- ---------- --ARGG---- 351 400 ENSP00000457353/1-379 ---QAFSFCT AGRWAAGEPV ARDGAGLQAA WRRQIRQFSR VSPAVADAVV ENSBTAP00000022021/1-372 ---GAFPFCT SGRWAAGEQV ARDGTGLRRA WWRQVRQFNR VSPAVADAIV ENSTTRP00000010793/1-420 VSAGQSRECT TACWAAAEKV ARDGTGLRGA CWQQIRQFNC VSPAVANAVV bmy_01927T0/1-246 GSLGPFPSAP PGAGQQPRRV ARDGTGLRGA WWQQIRQFNC VSPAVANAVV BACU009226/1-123 ---------- RGAGQQLRIV ARDGTGLRGA WWQQIRQFNC VSPAVANAVV 401 450 ENSP00000457353/1-379 TAFPSPRLLQ QALEACSTER ERMGLLADLP VPPSEGGRPR RVGPDLSRRI ENSBTAP00000022021/1-372 SAFPSPRLLQ QAYMACGTEQ ERLGLLADLP VKTGKGVPPR RVGPDLSRRV ENSTTRP00000010793/1-420 AAFPSPCLLQ QVCVACGMEQ GCLALLADLP VRMGKGVRPH RLGPDLSCCI bmy_01927T0/1-246 AAFPSPCLLQ QVYVACGMEQ VHLALLADLP VKMGEDVRPH RVGPDLSRRI BACU009226/1-123 AAFPSPCLLQ QVYVACGMEQ ERLALLADLP VKMGEDVQPY -----LSRHI 451 500 ENSP00000457353/1-379 CLFLTTANPD LLLDLGS ENSBTAP00000022021/1-372 CLFLTTTDPD LLLDLGS ENSTTRP00000010793/1-420 CLFLMTTIPD LPLDLGS bmy_01927T0/1-246 CLFLTTTNPD LLLDLGS BACU009226/1-123 CLFLTTTNPN LLLDLGS