KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:53 2014 Check: 00 .. Name: ENSP00000378050/1-255 Len: 300 Check: 3648 Weight: 1.00 Name: ENSBTAP00000022022/1-254 Len: 300 Check: 2449 Weight: 1.00 Name: ENSTTRP00000009725/1-253 Len: 300 Check: 9564 Weight: 1.00 Name: bmy_10865T0/1-297 Len: 300 Check: 6816 Weight: 1.00 Name: BACU019688/1-253 Len: 300 Check: 9421 Weight: 1.00 // 1 50 ENSP00000378050/1-255 ---------- --------MN FSGGGRQEAA GSRGRRAPR- PREQDRDVQL ENSBTAP00000022022/1-254 ---------- --------MN SSGGRRRETA GPKGRRAHRP PQDQDRDVQL ENSTTRP00000009725/1-253 ---------- --------MN APRGRRQEAA GPKGRRAQR- PREQDRDVQL bmy_10865T0/1-297 MGRSLTASTF HCSPQVLAMN ASRGRRQEAA GPKGRRAHR- PREQDRDVQL BACU019688/1-253 ---------- --------MN ASRGRRQEAA GPKGRRAHR- PREQDRDVQL 51 100 ENSP00000378050/1-255 SKALSYALRH GALKLGLPMG ADGFVPLGTL LQLPQFRGFS AEDVQRVVDT ENSBTAP00000022022/1-254 SKALSYALRH GALKLGLPMG ADGFVPLDAL LQLPQFRSFS AEDVQRVVDT ENSTTRP00000009725/1-253 SKALSYALRH GALKLGLPMG PDGFVPLDTL LQLPQFCSFS VEDVQRVVDT bmy_10865T0/1-297 SKALSYALRH GALKLGLPMG ADGFVPLGTL LQLPQFCSFS VEDVQRVVDT BACU019688/1-253 SKALSYALRH GALKLGLPMG ADGFVPLGTL LQLPQFCSFS VEDVQRVVDT 101 150 ENSP00000378050/1-255 NRKQRFALQL GDPSTGLLIR ANQGHSLQVG VPKLELMPLE TPQALPPMLV ENSBTAP00000022022/1-254 NVKQRFALQP GDPSTGPLIR ANQGHSLQ-- VPELELEPLE TPQALPLMLV ENSTTRP00000009725/1-253 NGKQRFALQP GDPGAGPLIR ANQGHSLK-- VPELELIPLE TPQALPLVLV bmy_10865T0/1-297 NGKQRFALRP GDPGAGPLIR ANQGHSLQ-- VPELELIPLE APQALPLMLV BACU019688/1-253 NGKQRFALRP GDPGAGPLIR ANQGHSLQ-- VPELELIPLE APQALPLMLV 151 200 ENSP00000378050/1-255 HGTFWKHWPS ILLKGLSCQG RTHIHLAPGL PGDPGII--- ---------- ENSBTAP00000022022/1-254 HGTFRQHWPS ILLKGLSCRG RTHIHLAPGL PGDPGVI--- ---------- ENSTTRP00000009725/1-253 HGTFWQHWPS ILLKGLSCWG RTHIHLAAGL LGDPGVI--- ---------- bmy_10865T0/1-297 HGTFWQHWPS ILLKGLSCRG RTHIHLAAGL PGDPGVISGQ CPLKLLPPIL BACU019688/1-253 HGTFWRHWPS ILLKGLSCRG RTHIHLAAGL PGDPGVV--- ---------- 201 250 ENSP00000378050/1-255 ---------- ---SGMRSHC EIAVFIDGPL ALADGIPFFR SANGVILTPG ENSBTAP00000022022/1-254 ---------- ---SGMRPNC EVAVFINGPL ALADGIPFFR STNGVILTPG ENSTTRP00000009725/1-253 ---------- ---SGMRPNC EVAVFINGPL ALADGIPFFR SANGVILTPG bmy_10865T0/1-297 SSQTPQTPAP IVYSGMRPNC EVAVFINGPL ALADGIPFFR SANGVILTPG BACU019688/1-253 ---------- ---SGMRPNC EVAVFINGPL ALADGIPFFR SANGVILTPG 251 300 ENSP00000378050/1-255 NTDGFLLPKY FKEALQLRPT RKPLSLAGDE ETECQSSPKH SSRERRRIQQ ENSBTAP00000022022/1-254 NADGVLPPKY FKEALQLRPT RKPLSLAGNE EKEHQRDSKH SSRGRGMTQQ ENSTTRP00000009725/1-253 NADGVLPPKY FKEALQLRPT RKPLSLAGNE ETECQSDPKH SSRGRRMTQQ bmy_10865T0/1-297 NADGVLPPKY FKEALQLRPT RKPLSLAGNE ETECQSDPKH SSRGRRMTQQ BACU019688/1-253 NADGVLPPKY FKEALQLRPT RKPLSLAGNE ETECQSDPKH SSRGRRMTQQ