KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:59 2014 Check: 00 .. Name: bmy_15476T0/1-620 Len: 741 Check: 360 Weight: 1.00 Name: ENSP00000294954/1-699 Len: 741 Check: 6231 Weight: 1.00 Name: ENSBTAP00000022047/1-701 Len: 741 Check: 4743 Weight: 1.00 Name: ENSTTRP00000003243/1-642 Len: 741 Check: 6022 Weight: 1.00 Name: BACU013880/1-579 Len: 741 Check: 9561 Weight: 1.00 // 1 50 bmy_15476T0/1-620 ---------- ---------- ---------- ---------- ---------- ENSP00000294954/1-699 MKQRFSALQL LKLLLLLQPP LPR--ALREA LCPEPCNCVP DGALRCPGPT ENSBTAP00000022047/1-701 MGRPSLALRL LLALLLLPPP APLLWALRPA PCPEPCSCPP DGALRCPGPQ ENSTTRP00000003243/1-642 ---------- ---------- ---------- ---------- ---------- BACU013880/1-579 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_15476T0/1-620 ---------- -MCEAVNSEE FQ--KKAHES RGSQTRLFLP WKGKATAPPS ENSP00000294954/1-699 AGLTRLSLAY LPVKVIPSQA FRGLNEVIKI EISQIDSLER IEANAFDNLL ENSBTAP00000022047/1-701 AGLSRLSLTY LPIKVIPSQA FRGLNEVIKI EISQSDSLEK IEANAFDNLL ENSTTRP00000003243/1-642 ------SLTY LPIKVIPSQA FRGLNEVIKI EISQSDSLEK IEANAFDSLL BACU013880/1-579 ---------- MTNHKIPELG ---------- EISQSDSLEK IEANAFDNLL 101 150 bmy_15476T0/1-620 LLTELVLVFK ---------- ---------- --CQAS---- -----TLSPS ENSP00000294954/1-699 NLSEILIQNT KNLRYIEPGA FINLPRLKYL SICNTGIRKF PDVTKVFSSE ENSBTAP00000022047/1-701 NLSEILIQNT KNLVHIEAGA FTNLPRLKYL SICNTGIHKL PDVTKIFSSE ENSTTRP00000003243/1-642 NLSEILIQNT KNLVYIEPGA FTNLPRLKYL SICNTGIRKL PDVTKIFSSE BACU013880/1-579 NLSEMSI--- ---------- ---------- --CNTGIRKL PDVTKIFSSE 151 200 bmy_15476T0/1-620 YTYLYAAIDS DNLVSL---- ---------- ---------K VEIHPGDGT- ENSP00000294954/1-699 SNFILEICDN LHITTIPGNA FQGMNNESVT LKLYGNGFEE VQSHAFNGTT ENSBTAP00000022047/1-701 FNFILEICDN LHITTIPRNA FQGMNNESIT LKLYGNGFEE IQSHAFNGTT ENSTTRP00000003243/1-642 FNFILEICDN LHITTVPGNA FQGMNNESIT LKLYGNGFEE IQSHAFNGTT BACU013880/1-579 FNFILEICDN LHITTVPGNA FQGMNNESIT LKLYGNGFEE IQSHAFNGTT 201 250 bmy_15476T0/1-620 ---MELKENA YLEKIHNGAF RGATGPSILD ISSTKLQALP SYGLESIQTL ENSP00000294954/1-699 LTSLELKENV HLEKMHNGAF RGATGPKTLD ISSTKLQALP SYGLESIQRL ENSBTAP00000022047/1-701 LISLELKENA RLEKMHNDAF RGATGPSILD ISSTQLQALP TYGLESIQTL ENSTTRP00000003243/1-642 LISLELKENA HLEKIHDGAF RGATGPSILD ISSTKLQA-P SYGLESIQTL BACU013880/1-579 LISLELKENA HLEKIHNGAF RGATGPSILD ISSTKLQALP SYGLESIQTL 251 300 bmy_15476T0/1-620 IATSSYSLKK LPSREKFTSL LDATLTYPSH CCAFRNLPTK EQNFSFSIFK ENSP00000294954/1-699 IATSSYSLKK LPSRETFVNL LEATLTYPSH CCAFRNLPTK EQNFSHSISE ENSBTAP00000022047/1-701 IATSSYSLKK LPSREKFTNL LDATLTYPSH CCAFRNLPTN EQNFSFSIFK ENSTTRP00000003243/1-642 IATSSYSLKR LPSRETLTNL LDATLTYPSH CCAFRNVPTK EQNFSLSIFK BACU013880/1-579 IATSSYSLKK LPSREKFTNL LDATLTYPSH CCAFRNLPTK D--------- 301 350 bmy_15476T0/1-620 NFSKQCESTA RRPNNETLYF DVTKGLFNDS LISALAFHIP SNVIVLLKYI ENSP00000294954/1-699 NFSKQCESTV RKVNNKTL-- ---------- ---------- ---------- ENSBTAP00000022047/1-701 NFSKQCESTA RRPNNETL-- ---------- ---------- ---------- ENSTTRP00000003243/1-642 NFSKQCESTA RRPNNETL-- ---------- ---------- ---------- BACU013880/1-579 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_15476T0/1-620 ILSTHCISYS AIFAESELSG WDYDYGFCLP KTLQCAPEPD AFNPCEDIMG ENSP00000294954/1-699 --------YS SMLAESELSG WDYEYGFCLP KTPRCAPEPD AFNPCEDIMG ENSBTAP00000022047/1-701 --------YS AIFAESELSG WDYDYGFCLP KTLQCAPEPD AFNPCEDIMG ENSTTRP00000003243/1-642 --------XX XXXXXXXXXX XDYDYG-CLP KTLQCAPEPD AFNPCEDIMG BACU013880/1-579 --------YS AIFAESELSG WDYDYGFCLP KTLQCAPEPD AFNPCEDIMG 401 450 bmy_15476T0/1-620 YDFLRVLIWL INILAITGNV TVLFVLLTSR YKLTVPRFLM CNLSFADFCM ENSP00000294954/1-699 YDFLRVLIWL INILAIMGNM TVLFVLLTSR YKLTVPRFLM CNLSFADFCM ENSBTAP00000022047/1-701 YNFLRVLIWL INILAITGNV TVLFVLLTSR YKLTVPRFLM CNLSFADFCM ENSTTRP00000003243/1-642 YDFLRVLIWL INILAITGNV TVLFVLLTSR YKLTVPRFLM CNLSFADFCM BACU013880/1-579 YDFLRVLIWL INILAITGNV TVLLVLLTSR YKLTVPRFLM CNLSFADFCM 451 500 bmy_15476T0/1-620 GLYLLLIASV DAQTKGQYYN HAIDWQTGSG CSAAGFFTVF ASELSVYTLT ENSP00000294954/1-699 GLYLLLIASV DSQTKGQYYN HAIDWQTGSG CSTAGFFTVF ASELSVYTLT ENSBTAP00000022047/1-701 GLYLLLIASV DAQTKGQYYN HAIDWQTGSG CSAAGFFTVF ASELSVYTLT ENSTTRP00000003243/1-642 GLYLLLIASV DAQTKGQYYN HAIDWQTGSG CSAAGFFTVF ASELSVYTLT BACU013880/1-579 GLYLLLIASV DAQTKGQYYN HAIDWQTGSG CSAAGFFTVF ASELSVYTLT 501 550 bmy_15476T0/1-620 VITLERWHTI TYAIQLDQKL RLKHAIPIML GGWLFSTLIA MLPLVGVSNY ENSP00000294954/1-699 VITLERWHTI TYAIHLDQKL RLRHAILIML GGWLFSSLIA MLPLVGVSNY ENSBTAP00000022047/1-701 VITLERWHTI TYAIQLDQKL RLKHAIPVML GGWLFSTLIA VLPLVGVSNY ENSTTRP00000003243/1-642 VITLERWHTI TYAIQLDQKL RLKHAIPIML GGWLFSTLIA MLPLVGVSNY BACU013880/1-579 VITLERWHTI TYAIQLDQKL RLKHAIPIML GGWLFSTLIA MLPLVGVSNY 551 600 bmy_15476T0/1-620 MKVSICLPMD VETTLSQVYI LTILMLNVVA FIIICACYIK IYFAVQNPEL ENSP00000294954/1-699 MKVSICFPMD VETTLSQVYI LTILILNVVA FFIICACYIK IYFAVRNPEL ENSBTAP00000022047/1-701 MKVSICLPMD VESTLSQVYI LTILILNVMA FIIICACYIK IYFAVQNPEL ENSTTRP00000003243/1-642 MKVSICLPMD VETTLSQVYI LTILMLNVVA FIIICACYIK IYFAVQNPEL BACU013880/1-579 MKVSICLPMD VETTLSQVYI LTILMLNVVA FIIICACYIK IYFAVQNPEL 601 650 bmy_15476T0/1-620 MATNKDTKIA KKMAVLIFTD FTCMAPISFF AISAAFKVPL ITVTNSKVLL ENSP00000294954/1-699 MATNKDTKIA KKMAILIFTD FTCMAPISFF AISAAFKVPL ITVTNSKVLL ENSBTAP00000022047/1-701 MATNKDTKIA KKMAVLIFTD FTCMAPISFF AISAAFKVPL ITVTNSKVLL ENSTTRP00000003243/1-642 MATNKDTKIA KKMAVLIFTD FTCMAPISFF AISAAFKVPL ITVTNSKVLL BACU013880/1-579 MATNKDTKIA KKMAVLIFTD FTCMAPISFF AISAAFKVPL ITVTNSKVLL 651 700 bmy_15476T0/1-620 VLFYPVNSCA NPFLYAIFTK AFRRDFFLLL SKFGCCKYRA ELYRRKDFSA ENSP00000294954/1-699 VLFYPINSCA NPFLYAIFTK TFQRDFFLLL SKFGCCKRRA ELYRRKDFSA ENSBTAP00000022047/1-701 VLFYPVNSCA NPFLYAIFTK AFQRDFFLLL SKFGCCKYRA ELYRRKDFSA ENSTTRP00000003243/1-642 VLFYPVNSCA NPFLYAIFTK AFRRDFFLLL SKFGCCKYRA ELYRRKDFSA BACU013880/1-579 VLFYPVNSCA NPFLYAIFTK AFRRDFFLLL SKFGCCKYRA ELYRRKDFSA 701 750 bmy_15476T0/1-620 YTSNCKNGFT GSNKPSQSTL KVTTLQCQYS AVLDKTCCKE C ENSP00000294954/1-699 YTSNCKNGFT GSNKPSQSTL KLSTLHCQGT ALLDKTRYTE C ENSBTAP00000022047/1-701 YISNCKNGFT GSNKPSRSTF KLTTLQCQYS AVLDKTCYKE C ENSTTRP00000003243/1-642 YTSNCKNGFT GSNKPSQSTL -VTTLQCQYS AVLDKTCCKE C BACU013880/1-579 YTSNCKNGFT GSNKPSQSTL KVTTLQCQYS AVLDKTCCKE C