KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:59 2014 Check: 00 .. Name: ENSP00000380876/1-467 Len: 526 Check: 1110 Weight: 1.00 Name: bmy_01862T0/1-481 Len: 526 Check: 5864 Weight: 1.00 Name: ENSBTAP00000022048/1-465 Len: 526 Check: 7410 Weight: 1.00 Name: BACU018975/1-456 Len: 526 Check: 9347 Weight: 1.00 Name: ENSTTRP00000004812/1-459 Len: 526 Check: 2911 Weight: 1.00 // 1 50 ENSP00000380876/1-467 MAAGPAPPPG RPRAQMPHLR KMERVVVSMQ DPDQGVKMRS QRLLVTVIPH bmy_01862T0/1-481 ---------- ---------- ---------- -------MRS QRLLVTVIPH ENSBTAP00000022048/1-465 MAASPAPLGG HPRVQRPHLS KMERMVVTMQ DPDQGVRMRS QRLLVTVIPH BACU018975/1-456 ---------G HRRAQRPHLS KMERMVVSMQ DPDQGVKMRS QRLLVTVIPH ENSTTRP00000004812/1-459 ---GPASHGG LRRAQRPHLS -MERMVVSMQ DPDQGVKMRS QRLLITVIPH 51 100 ENSP00000380876/1-467 AVT------- ---------- --------GS DVVQWLAQKF CVSEEEALHL bmy_01862T0/1-481 AVTGEVLQGR GWGAGPASAS PYPSLCYAGN DVMEWLIQKY CLTEEEALHL ENSBTAP00000022048/1-465 AVN------- ---------- --------GS DIVEWLMQKY SIAEDEALHL BACU018975/1-456 AVT------- ---------- --------GN DVMEWLIQKY CITEAEALHL ENSTTRP00000004812/1-459 AVT------- ---------- --------GN DIMEWLIHKY CITEEEALHL 101 150 ENSP00000380876/1-467 GAVLVQHGYI YPLRDPRSLM LRPDETPYRF -------QTP YFWTSTLRPA bmy_01862T0/1-481 GTLLVRHGYL YPLRDPCHLE LRLDETPYRF QVRLNWEQTP YFWMSTLWPA ENSBTAP00000022048/1-465 GSLLVQHGYL YPLRDPRRLE LRPDETPYRF -------QTP YFWTSTLWPA BACU018975/1-456 GTLLVRHGYL YPLRDPCHLE LRLDETPYRF -------QTP YFWMSTLWPA ENSTTRP00000004812/1-459 GTLLVRHGYL YPLRDPCHLE LRLDETPYRF -------QTP YFWMSTLWPA 151 200 ENSP00000380876/1-467 AELDYAIYLA ------KKNI RKRGTL---- ---------- ---VDYEKDC bmy_01862T0/1-481 AELDYACALS FQPSTWPRRT SESGGAWLTT KRAGHRREFP TGDLNTPQEH ENSBTAP00000022048/1-465 AELDYAIYLA ------KKNI RKQGAL---- ---------- ---VDHEKEH BACU018975/1-456 AELDYAIYLA ------KKNI RKRGGL---- ---------- ---VDHEKEH ENSTTRP00000004812/1-459 AELDYAIYLA ------KKNI RKRGGL---- ---------- ---FDHEKEH 201 250 ENSP00000380876/1-467 YDRLHKKINH AWDLVLMQAR EQLRAAKQRS KGDRLVIACQ EQTYWLVNRP bmy_01862T0/1-481 YDQLHRKISH TWDLVVMQAR EQLRAAKQRR KGDRLVIACQ EQTYWLVNRP ENSBTAP00000022048/1-465 YQQLHRKINH AWDLVMMQAR EQLRAAKQRR KGDRLVIACQ EQTYWLVNRP BACU018975/1-456 YDQLHRKISH TWDLVVMQAR EQLRAAKQRR KGDRLVIACQ EQTYWLVNRP ENSTTRP00000004812/1-459 YDQLHRKISH TWDLVVMQAR EQLWAAKQRR KGDRLVIACQ EQTYWLVNRP 251 300 ENSP00000380876/1-467 PPGAPDVLEQ GPGRGSCAAS RVLMTKSADF HKREIEYFRK ALGRTRVKSS bmy_01862T0/1-481 PPGVPSVLEQ GPQRGSCTAG RVQMTKTVDF YRREVECLRK AVGRARVKSS ENSBTAP00000022048/1-465 PPGAPSVLEQ GPGRGPCTAG RVPMTKTLDF YRREVECLRR ALGRARVKSS BACU018975/1-456 PPGVPSVLEQ GPQWGSCTAG RVQMGESRLV SSGASRGESV LLSPASVDTV ENSTTRP00000004812/1-459 PPGVPSVLEQ GPERNSCTAG RVQMXXXXXX XXXXXXXXXX XXXXXXXXXX 301 350 ENSP00000380876/1-467 VCLEAYLSFC GQRGPHDPLV SGCLPSNPWI SDNDAYWVMN APTVAAPTKL bmy_01862T0/1-481 VCLEAYLKFS SQRGPHDPIM SGCLPSNPWV TDNDTYWAMN APSAAVPTRL ENSBTAP00000022048/1-465 TCLEAYLKFS SQHGPHDPIM SGCLPSNPWV TDDDAYWAMN APSAAVPTRL BACU018975/1-456 FLDQIVFSFV VVGSVWSGIV TSEVVSDVFS TQEGCQSSSL FRGESSFDSL ENSTTRP00000004812/1-459 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 351 400 ENSP00000380876/1-467 RVERWGFSFR ELLEDPVGRA HFMDFLGKEF SGENLSFWEA CEEL--RYGA bmy_01862T0/1-481 RVEQWAFSFR ELLEDPVGRA HFMDFLRKEF SAENLSFWEA CEEL--RHGG ENSBTAP00000022048/1-465 RVEQWAFSFR ELLEDPVGRA HFMDFLGKEF SAENLSFWEA CEEL--RHGG BACU018975/1-456 AQIHDSMRVW DVLTHHCLPV LTPPLSARCW PSGTDHRGKA GLRLDSSFKH ENSTTRP00000004812/1-459 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX--XXXX 401 450 ENSP00000380876/1-467 QAQVPTLVDA VYEQFLAPGA AHWVNIDSRT MEQTLEGLRQ PHRYVLDDAQ bmy_01862T0/1-481 QAQVPAMVDA VYQQFLAPGA ARWVNIDSRT MERTLVGLGR PHRHVLDDAQ ENSBTAP00000022048/1-465 QAQVPALVDA VYQQFLAPGA ARWVNIDSRT MEQTLAGLTQ PHRHVLDDAQ BACU018975/1-456 NYLFIYLFMA ALGSVAAVRG LSLVAASGGY SSLRCAGFSL WWLLLLQSTG ENSTTRP00000004812/1-459 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 451 500 ENSP00000380876/1-467 LHIYMLMKKD SYPRFLKSDM YKALLAEAGI PLEMKRRVFP FTWRPRHSSP bmy_01862T0/1-481 LHIYMLMKKD SYPRFLKSDL YKDLLAEAVV PPETKQRVFP FMRKPRHSSP ENSBTAP00000022048/1-465 RHIYLLMKKD SYPRFLKSDL YRDLLAEAVV PLETKRRVFP FTRKPRHSSP BACU018975/1-456 SRPGCCLLQD SYPRFLKSDL YKDLLAEAVV PPETKRRVFP FMRKPRHSSP ENSTTRP00000004812/1-459 XXXXXXXXXD SYPRFLKSDL YKDLLAEAVV PPETKRRVFP FMRKPRHSSP 501 550 ENSP00000380876/1-467 SPALLPTPVE PTAACGPGGG DGVA-- bmy_01862T0/1-481 SPALLPA--- -SASGEPSGG DGEA-- ENSBTAP00000022048/1-465 SPALLPA--- -SASGEPVGG DGDGET BACU018975/1-456 SPALLPA--- -SASGEPSGG DGEA-- ENSTTRP00000004812/1-459 SPALLPA--- -SASREPSGG DGEA--