KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:15:59 2014 Check: 00 ..
Name: ENSP00000380876/1-467 Len: 526 Check: 1110 Weight: 1.00
Name: bmy_01862T0/1-481 Len: 526 Check: 5864 Weight: 1.00
Name: ENSBTAP00000022048/1-465 Len: 526 Check: 7410 Weight: 1.00
Name: BACU018975/1-456 Len: 526 Check: 9347 Weight: 1.00
Name: ENSTTRP00000004812/1-459 Len: 526 Check: 2911 Weight: 1.00
//
1 50
ENSP00000380876/1-467 MAAGPAPPPG RPRAQMPHLR KMERVVVSMQ DPDQGVKMRS QRLLVTVIPH
bmy_01862T0/1-481 ---------- ---------- ---------- -------MRS QRLLVTVIPH
ENSBTAP00000022048/1-465 MAASPAPLGG HPRVQRPHLS KMERMVVTMQ DPDQGVRMRS QRLLVTVIPH
BACU018975/1-456 ---------G HRRAQRPHLS KMERMVVSMQ DPDQGVKMRS QRLLVTVIPH
ENSTTRP00000004812/1-459 ---GPASHGG LRRAQRPHLS -MERMVVSMQ DPDQGVKMRS QRLLITVIPH
51 100
ENSP00000380876/1-467 AVT------- ---------- --------GS DVVQWLAQKF CVSEEEALHL
bmy_01862T0/1-481 AVTGEVLQGR GWGAGPASAS PYPSLCYAGN DVMEWLIQKY CLTEEEALHL
ENSBTAP00000022048/1-465 AVN------- ---------- --------GS DIVEWLMQKY SIAEDEALHL
BACU018975/1-456 AVT------- ---------- --------GN DVMEWLIQKY CITEAEALHL
ENSTTRP00000004812/1-459 AVT------- ---------- --------GN DIMEWLIHKY CITEEEALHL
101 150
ENSP00000380876/1-467 GAVLVQHGYI YPLRDPRSLM LRPDETPYRF -------QTP YFWTSTLRPA
bmy_01862T0/1-481 GTLLVRHGYL YPLRDPCHLE LRLDETPYRF QVRLNWEQTP YFWMSTLWPA
ENSBTAP00000022048/1-465 GSLLVQHGYL YPLRDPRRLE LRPDETPYRF -------QTP YFWTSTLWPA
BACU018975/1-456 GTLLVRHGYL YPLRDPCHLE LRLDETPYRF -------QTP YFWMSTLWPA
ENSTTRP00000004812/1-459 GTLLVRHGYL YPLRDPCHLE LRLDETPYRF -------QTP YFWMSTLWPA
151 200
ENSP00000380876/1-467 AELDYAIYLA ------KKNI RKRGTL---- ---------- ---VDYEKDC
bmy_01862T0/1-481 AELDYACALS FQPSTWPRRT SESGGAWLTT KRAGHRREFP TGDLNTPQEH
ENSBTAP00000022048/1-465 AELDYAIYLA ------KKNI RKQGAL---- ---------- ---VDHEKEH
BACU018975/1-456 AELDYAIYLA ------KKNI RKRGGL---- ---------- ---VDHEKEH
ENSTTRP00000004812/1-459 AELDYAIYLA ------KKNI RKRGGL---- ---------- ---FDHEKEH
201 250
ENSP00000380876/1-467 YDRLHKKINH AWDLVLMQAR EQLRAAKQRS KGDRLVIACQ EQTYWLVNRP
bmy_01862T0/1-481 YDQLHRKISH TWDLVVMQAR EQLRAAKQRR KGDRLVIACQ EQTYWLVNRP
ENSBTAP00000022048/1-465 YQQLHRKINH AWDLVMMQAR EQLRAAKQRR KGDRLVIACQ EQTYWLVNRP
BACU018975/1-456 YDQLHRKISH TWDLVVMQAR EQLRAAKQRR KGDRLVIACQ EQTYWLVNRP
ENSTTRP00000004812/1-459 YDQLHRKISH TWDLVVMQAR EQLWAAKQRR KGDRLVIACQ EQTYWLVNRP
251 300
ENSP00000380876/1-467 PPGAPDVLEQ GPGRGSCAAS RVLMTKSADF HKREIEYFRK ALGRTRVKSS
bmy_01862T0/1-481 PPGVPSVLEQ GPQRGSCTAG RVQMTKTVDF YRREVECLRK AVGRARVKSS
ENSBTAP00000022048/1-465 PPGAPSVLEQ GPGRGPCTAG RVPMTKTLDF YRREVECLRR ALGRARVKSS
BACU018975/1-456 PPGVPSVLEQ GPQWGSCTAG RVQMGESRLV SSGASRGESV LLSPASVDTV
ENSTTRP00000004812/1-459 PPGVPSVLEQ GPERNSCTAG RVQMXXXXXX XXXXXXXXXX XXXXXXXXXX
301 350
ENSP00000380876/1-467 VCLEAYLSFC GQRGPHDPLV SGCLPSNPWI SDNDAYWVMN APTVAAPTKL
bmy_01862T0/1-481 VCLEAYLKFS SQRGPHDPIM SGCLPSNPWV TDNDTYWAMN APSAAVPTRL
ENSBTAP00000022048/1-465 TCLEAYLKFS SQHGPHDPIM SGCLPSNPWV TDDDAYWAMN APSAAVPTRL
BACU018975/1-456 FLDQIVFSFV VVGSVWSGIV TSEVVSDVFS TQEGCQSSSL FRGESSFDSL
ENSTTRP00000004812/1-459 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
351 400
ENSP00000380876/1-467 RVERWGFSFR ELLEDPVGRA HFMDFLGKEF SGENLSFWEA CEEL--RYGA
bmy_01862T0/1-481 RVEQWAFSFR ELLEDPVGRA HFMDFLRKEF SAENLSFWEA CEEL--RHGG
ENSBTAP00000022048/1-465 RVEQWAFSFR ELLEDPVGRA HFMDFLGKEF SAENLSFWEA CEEL--RHGG
BACU018975/1-456 AQIHDSMRVW DVLTHHCLPV LTPPLSARCW PSGTDHRGKA GLRLDSSFKH
ENSTTRP00000004812/1-459 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX--XXXX
401 450
ENSP00000380876/1-467 QAQVPTLVDA VYEQFLAPGA AHWVNIDSRT MEQTLEGLRQ PHRYVLDDAQ
bmy_01862T0/1-481 QAQVPAMVDA VYQQFLAPGA ARWVNIDSRT MERTLVGLGR PHRHVLDDAQ
ENSBTAP00000022048/1-465 QAQVPALVDA VYQQFLAPGA ARWVNIDSRT MEQTLAGLTQ PHRHVLDDAQ
BACU018975/1-456 NYLFIYLFMA ALGSVAAVRG LSLVAASGGY SSLRCAGFSL WWLLLLQSTG
ENSTTRP00000004812/1-459 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
451 500
ENSP00000380876/1-467 LHIYMLMKKD SYPRFLKSDM YKALLAEAGI PLEMKRRVFP FTWRPRHSSP
bmy_01862T0/1-481 LHIYMLMKKD SYPRFLKSDL YKDLLAEAVV PPETKQRVFP FMRKPRHSSP
ENSBTAP00000022048/1-465 RHIYLLMKKD SYPRFLKSDL YRDLLAEAVV PLETKRRVFP FTRKPRHSSP
BACU018975/1-456 SRPGCCLLQD SYPRFLKSDL YKDLLAEAVV PPETKRRVFP FMRKPRHSSP
ENSTTRP00000004812/1-459 XXXXXXXXXD SYPRFLKSDL YKDLLAEAVV PPETKRRVFP FMRKPRHSSP
501 550
ENSP00000380876/1-467 SPALLPTPVE PTAACGPGGG DGVA--
bmy_01862T0/1-481 SPALLPA--- -SASGEPSGG DGEA--
ENSBTAP00000022048/1-465 SPALLPA--- -SASGEPVGG DGDGET
BACU018975/1-456 SPALLPA--- -SASGEPSGG DGEA--
ENSTTRP00000004812/1-459 SPALLPA--- -SASREPSGG DGEA--