KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:00 2014 Check: 00 .. Name: ENSP00000262320/1-862 Len: 1084 Check: 608 Weight: 1.00 Name: ENSBTAP00000022053/1-830 Len: 1084 Check: 8298 Weight: 1.00 Name: ENSTTRP00000008625/1-866 Len: 1084 Check: 8730 Weight: 1.00 Name: bmy_01866T0/1-754 Len: 1084 Check: 513 Weight: 1.00 Name: BACU009262/1-919 Len: 1084 Check: 3577 Weight: 1.00 // 1 50 ENSP00000262320/1-862 MNIQEQGFPL DLGASFTEDA PRPPVPGEEG ELVSTDPRPA SYSFCSGKGV ENSBTAP00000022053/1-830 MNIQEQGFPL DLGASFTEDA PRPPVPGEEG ELVSTDPRPV SHSFCSGKGA ENSTTRP00000008625/1-866 MNIQEQGFPL DLGASFTEDA PRPPVPGEEG ELVSTDPRPI SHSFCSGKGA bmy_01866T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU009262/1-919 MNIQEQGFPL DLGASFTEDA PRPPVPGEEG ELVSTDPRPI SHSFCSGKGA 51 100 ENSP00000262320/1-862 GIKGETSTAT PRRSDLDLGY EPEGSASPTP PYLKWAESLH SLLDDQDGIS ENSBTAP00000022053/1-830 GIKGETSTAT PRRSDLDLGY EPEGSASPTP PYLKWAESLH SLLDDQDGIN ENSTTRP00000008625/1-866 GIKGETSTAT PRRSDLDLGY EPEGSASPTP PYLKWAESLH SLLDDQDGIN bmy_01866T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU009262/1-919 GIKGETSTAT PRRSDLDLGY EPEGSASPTP PYLKWAESLH SLLDDQDGIN 101 150 ENSP00000262320/1-862 LFRTFLKQEG CADLLDFWFA CTGFRKLEPC DSNEEKRLKL ARAIYRKYIL ENSBTAP00000022053/1-830 LFRTFLKQED CADLLDFWFA CSGFRKLEPC DSNEEKRLKL ARAIYRKYIL ENSTTRP00000008625/1-866 LFRTFLKQED CADLLDFWFA CSGFRKLEPC DSNEEKRLKL ARAIYRKYIL bmy_01866T0/1-754 ------MHED VV-------- ----RQLLTC ---------- ---------- BACU009262/1-919 LFRTFLKQED CADLLDFWFA CSGFRKLEPC DSNEEKRLKL ARAIYRKYIL 151 200 ENSP00000262320/1-862 DNNGIVSRQT KPATKSFIKG CIMKQLIDPA MFDQAQTEIQ ATMEENTYPS ENSBTAP00000022053/1-830 DNNGIVSRQT KPATKSFIKD CISKQQIDPA MFDQAQTEVQ STMEENTYPS ENSTTRP00000008625/1-866 DNNGIVSRQT KPATKSFIKD CIMKQQIDPA MFDQAQTEIQ STMEENTYPS bmy_01866T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU009262/1-919 DNNGIVSRQT KPATKSFIKD CIMKQQIDPA MFDQAQTEIQ STMEENTYPS 201 250 ENSP00000262320/1-862 FLKSDIYLEY TRTGSESPKV CSDQSSGSGT GKGISGYLPT LNEDEEWKCD ENSBTAP00000022053/1-830 FLKSDIYLEY TRTGSESPKL CSDQSSGSGT GKGVPGYLPT LNEDEEWKCD ENSTTRP00000008625/1-866 FLKSDIYLEY TRTGSESPKL CSDQSSGSGT GKGVPGYLPT LNEDEEWKCD bmy_01866T0/1-754 -----LFV-- ---------- ---------- ---------- ---------- BACU009262/1-919 FLKSDIYLEY TRTGSESPKL CSDQSSGSGT GKGVPGYLPT LNEDEEWKCD 251 300 ENSP00000262320/1-862 QDMDEDDGRD AAPPGRLPQK LLLETAAPRV SSSRRYSEGR EFR------- ENSBTAP00000022053/1-830 REVDEDSGRD PAPPGRLTQK LLLETAAPRA SSSRRYSEGR ELR------- ENSTTRP00000008625/1-866 QDVDEDDGRD PAPPGRLTQK LLLETAAPRA SSSRRYSEGR EFR------- bmy_01866T0/1-754 ---------- ---------- ---------- --------GR ---------- BACU009262/1-919 QDVDEDDGRD PAPPSRLTQK LLLETATPRA SSSRRYSEGR EFRMLGLLSK 301 350 ENSP00000262320/1-862 ---------- ---------- ---------- ---------- ------YGSW ENSBTAP00000022053/1-830 ---------- ---------- ---------- ---------- ------CGSW ENSTTRP00000008625/1-866 ---------- ---------- ---------- ---------- ------YGSW bmy_01866T0/1-754 ---------- ---------- ---------- ---------- ------YGSW BACU009262/1-919 RRPLSVHFAG EEPAQGPLAS DPEVSVARSV LSSQVLRGCT CRDGAGYGSW 351 400 ENSP00000262320/1-862 REPVNPYYVN AGYALAPATS ANDSEQQSLS SDADTLSLTD SSVDGIPPYR ENSBTAP00000022053/1-830 REPVNPYYVN SGYALAPATS ANDSEQQSLS SDADSLSLTD SSVDGVPPYR ENSTTRP00000008625/1-866 REPVNPYYVN SGYALAPATS ANDSEQQSLS SDADSLSLTD SSVDGVPPYR bmy_01866T0/1-754 REPVNPYYVN SGYALAPATS ANDSEQQSLS SDADSLSLTD SSVDGVPPYR BACU009262/1-919 REPVNPYYVN SGYALAPATS ANDSEQQSLS SDADSLSLTD SSVDGVPPYR 401 450 ENSP00000262320/1-862 IRKQHRREMQ ESVQVNGRVP LPHIPRTYRV PKEVRVEPQK FAEELIHRLE ENSBTAP00000022053/1-830 TRRQHRREMQ ESVQANGRVP LPHIPRTYRM PKEVRVEPQK FAAELIHRLE ENSTTRP00000008625/1-866 IRKQHRREMQ ESVQVNGRVP LPHIPXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01866T0/1-754 IRKQHRREMQ ESVQVNGRVP LPHIPRTYRM PKEVRVEPQK FAAELIHRLE BACU009262/1-919 IRKQHRREMQ ESVQVNGRVP LPHIPRTYRM PKEVRVEPQK FAAELIHRLE 451 500 ENSP00000262320/1-862 AVQRTREAEE KLEERLKRVR MEEEGEDGDP SSGPPGPCHK LPPAPAWHHF ENSBTAP00000022053/1-830 AVQRTREAEE ELEERLKRVR MEEEGEDSDM PSGPQGASHK LPSAPAWHHF ENSTTRP00000008625/1-866 XXXXXXXXXX XXXXXXXXXX XEEEGEDGDV SSGPPGASHK LPSAPAWHHF bmy_01866T0/1-754 AVQRTREAEE KLEERLKRVR MEEEGEDGDV SSGPPGASHK LPSAPAWHHF BACU009262/1-919 AVQRTREAEE KLEERLKRVR MEEEGEDGDV SSGPPGASHK LPSAPAWHHF 501 550 ENSP00000262320/1-862 PPRCVDMGCA GLRDAHEENP ESILDEHVQR VLRTPGRQSP GPGHRSPDSG ENSBTAP00000022053/1-830 PSRYADVGCT GLRDAHEENP ESILDEHVQR VMRTPGCQSP GPGHRSPDSA ENSTTRP00000008625/1-866 PPRYADVSCV GLRDAHEENP ESILDEHVQR VMRTPGCQSP GPGHRSPDSA bmy_01866T0/1-754 PPRYADMSCV GLRDAHEENP ESILDEHVQR VMRTPGCQSP GPGHRSPDSA BACU009262/1-919 PPRYADMSCV GLRDAHEENP ESILDEHVQR VMRTPGCQSP GPGHRSPDSA 551 600 ENSP00000262320/1-862 HVAKMPVALG GAASGHGKHV PKSGAKLDAA GLHHHRHVHH HVHHSTARPK ENSBTAP00000022053/1-830 HVPKIGV-LG GAMPGHGKHA PKLGAKLDPT GLHLHRHGHH HGHHGAARPK ENSTTRP00000008625/1-866 HMPKMGA-LG GTVPGHGKHV PKSGAKLDTA GLHLHRHGHH HGHHGSARPK bmy_01866T0/1-754 HMPKMGV-LG GTVPGHGKHV PKSGAKLDTA GLHLHRHGHH HGHHGSARPK BACU009262/1-919 HMPKMGV-LG GTVPGHGKHV PKSGAKLDTV GLHLHRHGHH HGHHGSARPK 601 650 ENSP00000262320/1-862 EQVEAEATRR AQSSFAWGLE PHSHGARSRG YSESVGAAPN ASDGLAHSGK ENSBTAP00000022053/1-830 EPAEAEAARR VPGSFAWGPE LHGHAAKPRS HVESTGAPPA GGDGLAYGGK ENSTTRP00000008625/1-866 EPAEAEASRR VQSSFAWGPE LHGHAAKPRS HVESMGAAPT TSDSLAYSGK bmy_01866T0/1-754 EPAEAEASRR VQSSFAWGPE LHGHAAKPRS HVESMGAAPT TSDSLAYSGK BACU009262/1-919 EPAEAEASRR VQSSFAWGPE LHGHAAKPRS HVESMGAAPT TSDSLAYSGK 651 700 ENSP00000262320/1-862 VGVACKRNAK KAESGKSAST EVPGASEDAE KNQKIMQWII EGEKEISRHR ENSBTAP00000022053/1-830 VGTTSKRNSK KAELGKSSST EAPGPSEDAE KNQKIMQWII EGEKEISRHR ENSTTRP00000008625/1-866 ASMTSKRNSK KAESGKSTSV EAPGPSEDAE KNQKIMQWII EGEKEISRHR bmy_01866T0/1-754 ASMTSKRNSK KAESGKSTSV EAPGPSEDAE KNQKIMQWII EGEKEISRHR BACU009262/1-919 ASMTSKRNSK KAESGKSTSV EAPGPSEDAE KNQKIMQWII EGEKEISRHR 701 750 ENSP00000262320/1-862 RTGHGSSGTR KPQPHENSRP LSLE-----H PWAGPQLRTS VQPSHLFIQD ENSBTAP00000022053/1-830 KAGHGSSGAK KQQAHESSRP LSIERPGAVH PWVSAQLRSS VQPSHLFIQD ENSTTRP00000008625/1-866 KAGHGSSGAK KQQAHESSRP LSIERPGAVH PWVSAQLRTS VQPSHLFIQD bmy_01866T0/1-754 KAGHGSSGAK KQQAHESSRP LSIERPGAVH PWVSAQLRTS VQPSHLFIQD BACU009262/1-919 KAGHGSSGAK KQQAHESSRP LSIERPGAVH PWVSAQLRTS VQPSHLFIQD 751 800 ENSP00000262320/1-862 PTMPPHPAPN PLTQLEEARR RLEEEEKRAS RAPSKQRYVQ EVMRRGRACV ENSBTAP00000022053/1-830 PTMPPNPAPN PLTQLEEARR RLEEEEKRAS KAPSKQR--- ---------- ENSTTRP00000008625/1-866 PTMPPNPAPN PLTQLEEARR RLEEEEKRAS KAPSRQRYVQ EVIQRGRSCV bmy_01866T0/1-754 PTMPPNPAPN PLTQLEEARR RLEEEEKRAS KAPSRQRYVQ EVIQRGRSCV BACU009262/1-919 PTMPPNPAPN PLTQLEEARR RLEEEEKRAS KAPSRQRYVQ EVIQRGRACV 801 850 ENSP00000262320/1-862 RPACAPVLHV VPAVSDMELS ETETRSQRKV GGGSAQPCDS IVVAYYFCGE ENSBTAP00000022053/1-830 ---------- ---------- ---TKSQRKA GGGSTQPCDS IVVAYYFCGE ENSTTRP00000008625/1-866 RPACTPVLSV VPAVSDLELS ETETKSQRKA GGGSAQSCDS IVVAYYFCGE bmy_01866T0/1-754 RPACTPVLSV VPAVSDLELS ETETKSQRKA GGGSAQSCDS IVVAYYFCGE BACU009262/1-919 RPACTPVLSV VPAVSDLELS ETETKSQRKA GGGSAQSCDS IVVAYYFCGE 851 900 ENSP00000262320/1-862 PIPYRTLVRG RAVTLGQFKE LLTKKGSYRY YFKKVSDEFD CGVVFEEVRE ENSBTAP00000022053/1-830 PIPYRTLVRG RAVTLGQFKE LLTKKGNYRF YFKKVSDEFE CGVVFEEVRE ENSTTRP00000008625/1-866 PIPYRTLVRG RAVTLGQFKE LLTKKGNYRY YFKKVSDEFE CGVVFEEVRE bmy_01866T0/1-754 PIPYRTLVRG RAVTLGQFKE LLTKKGNYRY YFKKVSDEFE CGVVFEEVRE BACU009262/1-919 PIPYRTLVRG RAVTLGQFKE LLTKKGNYRY YFKKVSDEFE CGVVFEEVRE 901 950 ENSP00000262320/1-862 DEAVLPVFEE KIIGKVEKVD ---------- ---------- ---------- ENSBTAP00000022053/1-830 DTAVLPVFEE KIIGKVEKVD ---------- ---------- ---------- ENSTTRP00000008625/1-866 DGAVLPVFEE KVIGKVEKVD ---------- ---------- ---------- bmy_01866T0/1-754 DGAVLPVFEE KVIGKVEKEG GGPSGVPQAS THSSAGHSRA HPAGSPPWGR BACU009262/1-919 DGAVLPVFEE KVIGKVEKVD ---------- ---------- ---------- 951 1000 ENSP00000262320/1-862 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022053/1-830 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008625/1-866 ---------- ---------- ---------- ---------- ---------- bmy_01866T0/1-754 LETLPHGPLL LTADAPGAHP TGSASPSGTR PPWPALVRPV PEPGCRGPHG BACU009262/1-919 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000262320/1-862 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022053/1-830 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008625/1-866 ---------- ---------- ---------- ---------- ---------- bmy_01866T0/1-754 ASVHCTCHRV PSTQLVSCLT VWTRQRSTEA QAWAQRVPGP SLLRAHVNMY BACU009262/1-919 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000262320/1-862 ---------- ---------- ---------- ---- ENSBTAP00000022053/1-830 ---------- ---------- ---------- ---- ENSTTRP00000008625/1-866 ---------- ---------- ---------- ---- bmy_01866T0/1-754 ISQAWASGEG LPQARFSCAD LYNYLFKGTW IIMK BACU009262/1-919 ---------- ---------- ---------- ----