KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:00 2014 Check: 00 .. Name: ENSTTRP00000007326/1-636 Len: 663 Check: 2187 Weight: 1.00 Name: bmy_04539T0/1-506 Len: 663 Check: 1387 Weight: 1.00 Name: BACU005766/1-660 Len: 663 Check: 4182 Weight: 1.00 Name: ENSP00000363745/1-636 Len: 663 Check: 4421 Weight: 1.00 Name: ENSBTAP00000022054/1-633 Len: 663 Check: 424 Weight: 1.00 // 1 50 ENSTTRP00000007326/1-636 ---------- ---------- --MANQVNGN AVQLKEEEEP MDTSSVTHTE bmy_04539T0/1-506 ---------- ---------- ---------- --MWGKSEEP TDK------- BACU005766/1-660 MSPELRTPNG LVDKEIGIQH NKMANQVNGN AVQLKEEEEP MDTSSVTHTE ENSP00000363745/1-636 ---------- ---------- --MANQVNGN AVQLKEEEEP MDTSSVTHTE ENSBTAP00000022054/1-633 ---------- ---------- --MANQVNGN AVQLKEEEEP MDTSSVNHTE 51 100 ENSTTRP00000007326/1-636 HYKTLIEAGL PQKVAERLDE IFQTGLVAYV DLDERAIDAL REFNEEGALS bmy_04539T0/1-506 ------EIG- ---IAKLTDD L---GILFYV D--------- -------ALK BACU005766/1-660 HYKTLIEAGL PQKVAERLDE IFQTGLVAYV DLDERAIDAL REFNEEGALS ENSP00000363745/1-636 HYKTLIEAGL PQKVAERLDE IFQTGLVAYV DLDERAIDAL REFNEEGALS ENSBTAP00000022054/1-633 HYKTLIEAGL PQKVAERLDE IFQTGLVAYV DLDERAIDAL REFNEEGALS 101 150 ENSTTRP00000007326/1-636 VLQQFKESDL SHVQNKSAFL CGVMKTYRQR EKQGSKVQES TKGPDEAKIK bmy_04539T0/1-506 VII------- ---------- ---------- ---------- ---------- BACU005766/1-660 VLQQFKESDL SHVQNKSAFL CGVMKTYRQR EKQGSKVQES TKGPDEAKIK ENSP00000363745/1-636 VLQQFKESDL SHVQNKSAFL CGVMKTYRQR EKQGSKVQES TKGPDEAKIK ENSBTAP00000022054/1-633 VLQQFKESDL SHVQNKSAFL CGVMKTYRQR EKQGSKVQES TKGPDEAKIK 151 200 ENSTTRP00000007326/1-636 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVF VGKIPRDLYE bmy_04539T0/1-506 ---------- ---------- ---------- ----IKTKVF VGKIPRDLYE BACU005766/1-660 ALLERTGYTL DVTTGQRKYG GPPPDSVYSG MQPGIGTEVF VGKIPRDLYE ENSP00000363745/1-636 ALLERTGYTL DVTTGQRKYG GPPPDSVYSG VQPGIGTEVF VGKIPRDLYE ENSBTAP00000022054/1-633 ALLERTGYTL DVTTGQRKYG GPPPDSVYSG VQPGIGTEVF VGKIPRDLYE 201 250 ENSTTRP00000007326/1-636 DELVPLFEKA GPIWDLRLMM DPLSGQNRGY AFITFCGKEA AQEAVKLCDS bmy_04539T0/1-506 DELVPLFEKA GPIWDLXLMM DPLSGQNRGY AFITFCGKEA AQEAVKLCDS BACU005766/1-660 DELVPLFEKA GPIWDLRLMM DPLSGQNRGY AFITFCGKEA AQEAVKLCDS ENSP00000363745/1-636 DELVPLFEKA GPIWDLRLMM DPLSGQNRGY AFITFCGKEA AQEAVKLCDS ENSBTAP00000022054/1-633 DELVPLFEKA GPIWDLRLMM DPLSGQNRGY AFITFCGKEA AQEAVKLCDS 251 300 ENSTTRP00000007326/1-636 YEIRPGKHLG VCISVANNRL FVGSIPKNKT KENILEEFSK VTGLTEGLVD bmy_04539T0/1-506 YXIRPGKHLG VCISVANNRL FVGSIPKNKT KENILEEFSK V---TEGLVD BACU005766/1-660 YEIRPGKHLG VCISVANNRL FVGSIPKNKT KENILEEFSK V---TEGLVD ENSP00000363745/1-636 YEIRPGKHLG VCISVANNRL FVGSIPKNKT KENILEEFSK VTGLTEGLVD ENSBTAP00000022054/1-633 YEIRPGKHLG VCISVANNRL FVGSIPKNKT KENILEEFSK V---TEGLVD 301 350 ENSTTRP00000007326/1-636 VILYHQPDDK KKNRGFCFLE YEDHKSAAQA RRRLMSGKVK VWGNVVTVEW bmy_04539T0/1-506 VILYHQPDDK KKNRGFCFLE YEDHKSAAQA RRRLMSGKVK VWGNVVTVEW BACU005766/1-660 VILYHQPDDK KKNRGFCFLE YEDHKSAAQA RRRLMSGKVK VWGNVVTVEW ENSP00000363745/1-636 VILYHQPDDK KKNRGFCFLE YEDHKSAAQA RRRLMSGKVK VWGNVVTVEW ENSBTAP00000022054/1-633 VILYHQPDDK KKNRGFCFLE YEDHKSAAQA RRRLMSGKVK VWGNVVTVEW 351 400 ENSTTRP00000007326/1-636 ADPVEEPDPE VMAKVKVLFV RNLATTVTEE ILEKSFSEFG KLERVKKLKD bmy_04539T0/1-506 ADPVEEPDPE VMAKVKVLFV RNLATTVTEE ILEKSFSEFG KLERVKKLKD BACU005766/1-660 ADPVEEPDPE VMAKVKVLFV RNLATTVTEE ILEKSFSEFG KLERVKKLKD ENSP00000363745/1-636 ADPVEEPDPE VMAKVKVLFV RNLATTVTEE ILEKSFSEFG KLERVKKLKD ENSBTAP00000022054/1-633 ADPVEEPDPE VMAKVKVLFV RNLATTVTEE ILEKSFSEFG KLERVKKLKD 401 450 ENSTTRP00000007326/1-636 YAFVHFEDRG AAVKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04539T0/1-506 YAFVHFEDRG AAVKAMDEMN GKEIEGEEIE IVLAKPPDKK RKERQAARQA BACU005766/1-660 YAFVHFEDRG AAVKAMDEMN GKEIEGEEIE IVLAKSPDKK RKERQAARQA ENSP00000363745/1-636 YAFVHFEDRG AAVKAMDEMN GKEIEGEEIE IVLAKPPDKK RKERQAARQA ENSBTAP00000022054/1-633 YAFVHFEDRG AAVKAMDEMN GKEIEGEEIE IVLAKPPDKK RKERQAARQA 451 500 ENSTTRP00000007326/1-636 XXXXXXXXXX XXPPPRMPPP IRGRGRGGGR GGYGYPPDYY GYEDYYDDYY bmy_04539T0/1-506 SRSTAYEDYY YHPPPRMPPP IRGRGRGGGR GGYGYPPDYY GYEDYYDDXY BACU005766/1-660 SRSTAYEDYY YHPPPRMPPT IRGRGRGGGR GGYGYSPDYY GYEDYYDDCY ENSP00000363745/1-636 SRSTAYEDYY YHPPPRMPPP IRGRGRGGGR GGYGYPPDYY GYEDYYDDYY ENSBTAP00000022054/1-633 SRSTAYEDYY YHPPPRMPPP IRGRGRGGGR GGYGYPPDYY GYEDYYDDYY 501 550 ENSTTRP00000007326/1-636 GYDYHDYRGG YEDPYYGYDD GYAVRGRGGG RGGRGAPPPP RGRGAPPPRG bmy_04539T0/1-506 GYDYHDYRGG YEDPYYGYDD GYAVRGRGGG RGGRGAPPPP RGRGAPPPRG BACU005766/1-660 GYDYHDYHGG YEDPYYGYDD GYAVRGRGGG RGGRGAPPPP RGRGAPPPRG ENSP00000363745/1-636 GYDYHDYRGG YEDPYYGYDD GYAVRGRGGG RGGRGAPPPP RGRGAPPPRG ENSBTAP00000022054/1-633 GYDYHDYRGG YEDPYYGYDD GYAVRGRGGG RGGRGAPPPP RGRGAPPPRG 551 600 ENSTTRP00000007326/1-636 RAGYSQRGAP LGPPRGSRGG RGGPAQQQRG RGSRGSRGNR GGNVGGKRKA bmy_04539T0/1-506 RAGYSQRGXP LGPPRXSRGG RGGPXQQQRG RGSRGSRGNR GGNVGGKRKA BACU005766/1-660 RADYSQRGAP LGPPRGSRGG RGGPAQQQRG RGSRGSRGNR GGNVGGKRKA ENSP00000363745/1-636 RAGYSQRGAP LGPPRGSRGG RGGPAQQQRG RGSRGSRGNR GGNVGGKRKA ENSBTAP00000022054/1-633 RAGYSQRGAP LGPPRGSRGG RGGPAQQQRG RGSRGSRGNR GGNVGGKRKA 601 650 ENSTTRP00000007326/1-636 DGYNQPDSKR RQTNNQQNWG SQPIAQQPLQ QGGDYSGNYG YNNDNQEFYQ bmy_04539T0/1-506 DGYNQPDSKR RQTNNQQXWG SQPIAQQPLQ QGGDYSGNYG YNNDNQEFYQ BACU005766/1-660 DGYNQPDSKR RQTNNQQNWG SQPIAQQPLQ QGGDYSGTMV TIMTTRNFIR ENSP00000363745/1-636 DGYNQPDSKR RQTNNQQNWG SQPIAQQPLQ QGGDYSGNYG YNNDNQEFYQ ENSBTAP00000022054/1-633 DGYNQPDSKR RQTNNQQNWG SQPIAQQPLQ QGGDYSGNYG YNNDNQEFYQ 651 700 ENSTTRP00000007326/1-636 DTYGQQWK-- --- bmy_04539T0/1-506 DTYGQQWK-- --- BACU005766/1-660 ILMGNSGNRQ VRA ENSP00000363745/1-636 DTYGQQWK-- --- ENSBTAP00000022054/1-633 DTYGQQWK-- ---