KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:01 2014 Check: 00 .. Name: ENSTTRP00000011715/1-123 Len: 230 Check: 6184 Weight: 1.00 Name: ENSP00000357863/1-213 Len: 230 Check: 5193 Weight: 1.00 Name: ENSBTAP00000022058/1-230 Len: 230 Check: 7455 Weight: 1.00 Name: bmy_10359T0/1-200 Len: 230 Check: 9985 Weight: 1.00 Name: BACU001905/1-171 Len: 230 Check: 5002 Weight: 1.00 // 1 50 ENSTTRP00000011715/1-123 -----MAAVA EEPSRGYWDD EEEEEEE-XX XXXXXXXXXX XXXXXXXXXX ENSP00000357863/1-213 -----MAAAA DERSPEDGED EEEE----EQ LVLVELSGII DSDFLSKCEN ENSBTAP00000022058/1-230 QRSGGMAAAA KEPSWVDWDE EEEEEEETEQ LVMVELSGIL DSDLLSKCEN bmy_10359T0/1-200 ---------- ---------- --------EQ LVLVELSGII DSDFLSKCEN BACU001905/1-171 -----MAAAA KEP------- ---------- ---------- ---------- 51 100 ENSTTRP00000011715/1-123 XXXXXGIDTE KPILQVDSYV FAGEYE-DTL GTCVIFEENV EHVDAEGNNK ENSP00000357863/1-213 KCKVLGIDTE RPILQVDSCV FAGEYE-DTL GTCVIFEENV EHADTEGNNK ENSBTAP00000022058/1-230 KCKILGIDTE RPILQVDSYV FAGEYEADTV GTCVIFEENV EYVDAEGSNK bmy_10359T0/1-200 KCKILGIDTE KPILQVDSYV FAGEYE-DTL GTCVIFEENV EHVDAEGNNK BACU001905/1-171 ---------- -----MDSYV FAGEYE-DTL GTCVIFEENV EHVDAEGNNK 101 150 ENSTTRP00000011715/1-123 TALKYKCHTM KKLSMTRTLL TEKKEGEENI ---------- ---------- ENSP00000357863/1-213 TVLKYKCHTM KKLSMTRTLL TEKKEGEENI GGVEWLQIKD NDFSYRPNMI ENSBTAP00000022058/1-230 TVLKYKCHTM KKLSMTRTLL TEKKEGEENI GGVEWLQIKE NDFSYRPNMI bmy_10359T0/1-200 TVLKYKCHTM KKLSMTRTLL TEKKEGEENI GGVEWLQIKE NDFSCRPNMI BACU001905/1-171 TVLKYKCHTM KKLSMTRTLL TEKKEGEENI GGVEWLQIKE NDFSCRPNMI 151 200 ENSTTRP00000011715/1-123 ---------- ---------- ---------- ---------- ---------- ENSP00000357863/1-213 CNFLHENEDE EVVASAPDKS LELEEEEIQM NDSSNLSCEQ EKPMHLEIED ENSBTAP00000022058/1-230 CNFLHQHEED EAVAPDPDKS LELEEHETQM KDNSNLSFEQ EKPPNLEIED bmy_10359T0/1-200 CSFLHENEED EVVAPDPDKS LELEEQEIQM KDNSNLSYEQ EKPPNLDIED BACU001905/1-171 CSFLHENEAD EVVAPDPDTS LELEEQEIQM KDNSNLSYEQ EKPPNLNIED 201 250 ENSTTRP00000011715/1-123 ---------- ---------- ---------- ENSP00000357863/1-213 SGPLIDIPS- ETEGSVFMET Q-----MLP- ENSBTAP00000022058/1-230 SGPLIDIPSF ETEGSVFMDT QETAIEITPR bmy_10359T0/1-200 SGPLIDIPS- ETEGSVFMET QETALEITPR BACU001905/1-171 SGPLIDIPS- ETEGSVFMET QETALEITPR