KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:01 2014 Check: 00 .. Name: ENSP00000401338/1-771 Len: 813 Check: 289 Weight: 1.00 Name: ENSBTAP00000022065/1-723 Len: 813 Check: 4428 Weight: 1.00 Name: bmy_01869T0/1-805 Len: 813 Check: 3733 Weight: 1.00 Name: BACU009260/1-750 Len: 813 Check: 1200 Weight: 1.00 Name: ENSTTRP00000008644/1-724 Len: 813 Check: 8203 Weight: 1.00 // 1 50 ENSP00000401338/1-771 MGRAGTGTGG EAVAAVVAGP LLLLLLARPP PASAGYSGKS ---------- ENSBTAP00000022065/1-723 MRGAGTGTGG AAVA--VAMS LLLLLLSRSP PAAAGDGRKS ---------- bmy_01869T0/1-805 MRQAGTGTGG AAVA--VAVP LLLLLLARSP PAAAGDGKKS GEGDPGHPGL BACU009260/1-750 -MRASIFSPG EG-------- ---------D PGHPGLADST ---------- ENSTTRP00000008644/1-724 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000401338/1-771 -------EVG LVSEHFSQAP QRLSFYSWYG SARLFRFRVP PDAVLLRWLL ENSBTAP00000022065/1-723 -------DSR LVSEQFSQAP QKLAFYNWYG SARLFHFRVP PDTVLLHWLL bmy_01869T0/1-805 ADSAFSADAR LVSEQFSQAP QKLAFYSWYG SARLFHFRVP PDTVLLRWLL BACU009260/1-750 ----FSTDAR LVSEQFSQAP QKLAFYSWYG SARLFHFRVP PDTVLLRWLL ENSTTRP00000008644/1-724 --------AR LVSEQFSQAP QKLAFYSWYG SARLFHFRVP PDTVLLRWLL 101 150 ENSP00000401338/1-771 QVSRESGAAC TDAEITVHFR SGAPPVINPL GTSFPDDTAV QPSFQVGVPL ENSBTAP00000022065/1-723 QVTRGSGPTC NNVETTVYFR YGAPPVINPL GTSFANNTSV QPSF-----L bmy_01869T0/1-805 QVSRGSGPTC TNMEITVYFR YGAPPVINPL GTSFPDNTSV QPSF-----L BACU009260/1-750 QVSRGSGPTC TNMEITVYFR YGAPPVINPL GTSFPDNTSV QPSF-----L ENSTTRP00000008644/1-724 QVSRGSGPTC TNVEITVYFR YGAPPVINPL GTSFPDNTSV QPSF-----F 151 200 ENSP00000401338/1-771 STTPRSNASV NVSHPAPGDW FVAAHLPPSS QKIELKGLAP TCAYVFQPEL ENSBTAP00000022065/1-723 LRMLQDNASV NVSYPAPGDW FVAAHLPPSS HKIEVKDFIP TCAYIFQPDM bmy_01869T0/1-805 LKMLHSNASI NISHPAPGDW FVAAHLPPSS HKIEVKGFVP TCACIFQPDM BACU009260/1-750 LKMLHSNASV NISHPAPGDW FVAAHLPPSS HKIEVKGFVP TCAYIFQPDM ENSTTRP00000008644/1-724 LKMLHSNASI NISHPAPGDW FVAAHLPPSS HKIEVKGFVP TCAYIFQPDM 201 250 ENSP00000401338/1-771 LVTRVVEISI MEPDVPLPQT LLSHPSYLKV FVPDYTRELL LELRDCVSNG ENSBTAP00000022065/1-723 LVVRVVEMSI LEPD------ ---------- ---------- ---------- bmy_01869T0/1-805 LVVRVVEVSI LEPDVPLPQT LLSHPSYLKV FVPEYTQELR LELQGCASNG BACU009260/1-750 LVVRVVEVSI LEPDVPFPQT LLSHPSYLKV FVPEYTQELR LELQGCASNG ENSTTRP00000008644/1-724 LVVRVVEVSI LEPDVPLPQT LLSHPSYLKV FVPEYTQELR LELQGCASNG 251 300 ENSP00000401338/1-771 SLGCPVRLTV GPVTLPSNFQ KVLTCTGAPW PCRLLLPSPP WDRWLQVTAE ENSBTAP00000022065/1-723 -----VHLTV GSATLPGNFQ KVLTCSDPTT ACRLLLPSPP WERWLQVTAK bmy_01869T0/1-805 SLGCPVRLTV GSATLPGNFQ KVLTCSGPTQ ACRLLLPSPP WDRWLQVTAK BACU009260/1-750 SLGCPVSLTV GSATLPGNFQ KVLTCSGPTQ ACRLLLPSPP WDRWLQVTAK ENSTTRP00000008644/1-724 SLGCPVRLTV GLATLPGNFQ KVLTCSGPTQ ACHLLLPSPP WDRWLQVTAK 301 350 ENSP00000401338/1-771 SLVGPLGTVA FSAVAALTAC RPRSVTIQPL LQSSQNQSFN ASSGLLSPSP ENSBTAP00000022065/1-723 SLAGPRVLVT FSAVAALTAC RPWTANLQRL LQSSPNQSSN ASTGPPPLSP bmy_01869T0/1-805 SLSGPHVSVA FSVVAALTAC RPWSVNFQHL LQSSPNQSSN ASTGLLPPTP BACU009260/1-750 SLAGPRVSVA FSAVAALTAC RPWSVNFQHL LQSSPNQSSN ASTGLLPPTP ENSTTRP00000008644/1-724 SLAGPRVSVA FSAVAALTAC RPWSVNFQHL LQSSPNQSSN ASTGLLPPTP 351 400 ENSP00000401338/1-771 DHQDLGRSGR VDRSPFCLTN YPVTREDMDV VSVHFQPLDR VSVRVCSDTP ENSBTAP00000022065/1-723 NTQDLDQSGE AGSGAFCFRS FPILREDMDV VSVRFRPLDR ASVLVQSDMP bmy_01869T0/1-805 SYQDLDRRGR VGGGPFCLRS FPVLREDMDV VSVRFQPLDR VSVLVQSDMP BACU009260/1-750 SYQDLDRRGR VGGGPFCLRS FPVLREDVDV VSVRFQPLDR VSVLVQSDMP ENSTTRP00000008644/1-724 SYQDLDRRGR VGGGSFCLRS FPVLREDVDV VSVRFQPLDR VSVLVQSDMP 401 450 ENSP00000401338/1-771 SVMRLRLNTG MDSGGSLTIS LRANKTEMRN ETVVVACVNA ASPFLGFNTS ENSBTAP00000022065/1-723 SVMKLHLNTG MDSGGSLSIS VSVNQTVIAS NTSVVACVTA GSPFLSFNTS bmy_01869T0/1-805 SVMRLNLNTG MDSGGSLTVS MRVNKTAIAN -TSVVACVTA ASPLLSFNAS BACU009260/1-750 SVMRLNLNTG MDSGGSLTIS MRVNKTAIAN -TSVVACVTA ASPLLSFNAS ENSTTRP00000008644/1-724 SVMRLNLNTG MDSGGSLTIS MRVNKTAIAN -TSVVACVTA ASPLLSFNAS 451 500 ENSP00000401338/1-771 LNCTT----- ---------- ---------- AFFQGYPLSL SAWSRRANLI ENSBTAP00000022065/1-723 LNCTT----- ---------- ---------- AFFQGYPLSL SASSPTANLS bmy_01869T0/1-805 LSCTTGIGGI RPRDQQALWL PMTRSSSSPA AFFQGHPLSL SASSPTANLI BACU009260/1-750 LSCTT----- ---------- ---------- AFFQGHPLSL SASSPTANLI ENSTTRP00000008644/1-724 LSCTT----- ---------- ---------- AFFQGHPLSL SASSPTANLI 501 550 ENSP00000401338/1-771 IPYPETDNWY LSLQLMCPEN AEDCEQAVVH VETTLYLVPC LNDCGPYGQC ENSBTAP00000022065/1-723 IPYPETDNWY LSLQVLCPER PEECMQPSVL VETTLYLVPC LNDCGPYGQC bmy_01869T0/1-805 IPYPETDNWY LSLQLMCPER PEECEQASVL VETTLYLVPC LNDCGPYGQC BACU009260/1-750 IPYPETDNWY LSLQLMCPER PEECEQASVL VETTLYLVPC LNDCGPYGQC ENSTTRP00000008644/1-724 IPYPETDNWY LSLQLMCPER PEECEQASVL VETTLNLVPC LNDCGPYGQC 551 600 ENSP00000401338/1-771 LLLRRHSYLY ASCSCKAGWR GWSCTDNSTA QTVAQQRAAT LLLTLSNLMF ENSBTAP00000022065/1-723 LLLRRHGYLY AGCSCRAGWR GWSCTDNSTA QTLAQQKVAT LLLTLSNLMF bmy_01869T0/1-805 LLLRRHGYLY AGCSCKAGWR GWSCTDNSTA QTAAQQKAAA LLLTLSNLVF BACU009260/1-750 LLLRRHGYLY AGCSCKAGWR GWSCTDNSTA QTAAQQKAAA LLLTLSNLVF ENSTTRP00000008644/1-724 LLLRRHGYLY AGCSCKAGWR GWSCTDNSTA QTAAQQKAAA LLLTLSNLVF 601 650 ENSP00000401338/1-771 LAPIAVSVRR FFLVEASVYA YTMFFSTFYH ACDQPGEAVL CILSYDTLQY ENSBTAP00000022065/1-723 LAPIAISVHR CLLVEASVYA YTMFFSTFYH ACDQPGDAVL CILNYDTLQY bmy_01869T0/1-805 LAPIAISVHR SLLVEASVYA YTMFFSTFYH ACDQPGEAVL CILNYDTLQY BACU009260/1-750 LAPIAISVHR SLLVEASVYA YTMFFSTFYH ACDQPGEAVL CILNYDTLQY ENSTTRP00000008644/1-724 LAPIAISVHR SLLVEASVYA YTMFFSTFYH ACDQPGEAVL CILNYDTLQY 651 700 ENSP00000401338/1-771 CDFLGSGAAI WVTILCMARL KTVLKYVLFL LGTLVIAMSL QLDRRGMWNM ENSBTAP00000022065/1-723 CDFLGSGVSI WVTVLCMARL KASLKYVLFI LGALVFAMSL QLDRRAAWNT bmy_01869T0/1-805 CDFLGSGVSI WVTVLCMARL KAALKYVLFL LGALVFAMSL QLDRRAAWNT BACU009260/1-750 CDFLGSGVSI WVTILCMARL KAALKYVLFL LGALVFAMSL QLDRRAAWNT ENSTTRP00000008644/1-724 CDFLGSGVSI WVTVLCMARL KAALKYVLFL LGALVFAMSL QLDRRAAWNT 701 750 ENSP00000401338/1-771 LGPCLFAFVI MASMWAYRCG HRRQCYPTSW QRWAFYLLPG VSMASVGIAI ENSBTAP00000022065/1-723 TGPCLFAIVV MVTMWVYRCG RRRHCYPPSW QRWVFYLLPG LSMAALALTI bmy_01869T0/1-805 MGPCLFAIVV MVTMWVYRCG RRRHCYPPSW QRWVFYLLPG ISMAAVAITI BACU009260/1-750 MGPCLFAIVV MVTMWVYRCG RRRHCYPPSW QRWVFYLLPG ISMAAVAITI ENSTTRP00000008644/1-724 MGPCLFAIVV MVTMWVYRCG RRRHCYPPSW QRWVFYLLPG ISMAAVAITI 751 800 ENSP00000401338/1-771 YTSMMTSDNY YYTHSIWHIL LAGSAALLLP PPDQPAEPWA CSQKFPCHYQ ENSBTAP00000022065/1-723 YVSMMTSENY YYTHSIWHML LAGSAAFLLP PREQHAEPWA CAQKLTCHYE bmy_01869T0/1-805 YASMMTSDNY YYTHSIWHML LAGSAAFLLP PREQHTKPWA CSQKLTCHYE BACU009260/1-750 YTSMMTSDNY YYTHSIWHML LAGSAAFLLP PREQHTKPWA CSQKLTCHYE ENSTTRP00000008644/1-724 YTSMMTSDNY YYTHSIWHML LAGSAAFLLP PREQHTKPWA CSQKLTCHYE 801 850 ENSP00000401338/1-771 ICKNDREELY AVT ENSBTAP00000022065/1-723 ICKNHRDELY TVT bmy_01869T0/1-805 ICKNHRDELY TVT BACU009260/1-750 ICKNHRDELY TVT ENSTTRP00000008644/1-724 ICKNHRDELY TVT