KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:02 2014 Check: 00 .. Name: ENSP00000448073/1-892 Len: 1001 Check: 1112 Weight: 1.00 Name: ENSBTAP00000022067/1-872 Len: 1001 Check: 1251 Weight: 1.00 Name: bmy_05774T0/1-976 Len: 1001 Check: 8474 Weight: 1.00 Name: ENSTTRP00000011192/1-872 Len: 1001 Check: 3045 Weight: 1.00 Name: BACU019859/1-865 Len: 1001 Check: 8443 Weight: 1.00 // 1 50 ENSP00000448073/1-892 MSVPDSGPRP PAAPAPFPPG PPMMPPPFMP PPGIPPPFPP MGLPPMSQRP ENSBTAP00000022067/1-872 ---------- ---------- --MMPPPFMP PPGIPPPFPP MGLPPMSQRP bmy_05774T0/1-976 ---------- ---------- --MMPPPFMP PPGIPPPFPP MGLPPMSQRP ENSTTRP00000011192/1-872 ---------- ---------- --MMPPPFMP PPGIPPPFPP MGLPPMSQRP BACU019859/1-865 ---------- ---------- --------MP PPGIPPPFPP MGLPPMSQRP 51 100 ENSP00000448073/1-892 PAIPPMPPGI LPPMLPPMGA PPPLTQIPGM VPPMMPGMLM PAVPVTAATA ENSBTAP00000022067/1-872 PAIPPMPPGI MPPMLPPMGA PPPLTQIPGM VPPMMPGMLM PAVPVTAATA bmy_05774T0/1-976 PAIPPMPPGI MPPMLPPIGA PPPLTQIPGM VPPMMPGMLM PAVPVTAATA ENSTTRP00000011192/1-872 PAIPPMPPGI MPPMLPPIGA PPPLTQIPGM VPPMMPGMLM PAVPVTAATA BACU019859/1-865 PAIPPMPPGI MPPMLPPIGA PPPLTQIPGM VPPMMPGMLM PAVPVTAATA 101 150 ENSP00000448073/1-892 PGADTASSAV AGTGPPRALW SEHVAPDGRI YYYNADDKQS VWEKPSVLKS ENSBTAP00000022067/1-872 PGADTASSAV AGTGPPRALW SEHVAPDGRI YYYNADDKQS VWEKPSVLKS bmy_05774T0/1-976 PGADTASSAV AGTGPPRALW SEHVAPDGRI YYYNADDKQS VWEKPSVLKS ENSTTRP00000011192/1-872 PGADTASSAV AGTGPPRALW SEHVAPDGRI YYYNADDKQS VWEKPSVLKS BACU019859/1-865 PGADTASSAV AGTGPPRALW SEHVAPDGRI YYYNADDKQS VWEKPSVLKS 151 200 ENSP00000448073/1-892 KAELLLSQCP WKEYKSDTGK PYYYNNQSKE SRWTRPKDLD DLEVLVKQEA ENSBTAP00000022067/1-872 KAELLLSQCP WKEYKSDTGK PYYYNNQSKE SRWTRPKDLD DLEALVKQEA bmy_05774T0/1-976 KAELLLSQCP WKEYKSDTGK PYYYNNQSKE SRWTRPKDLD DLEALVKQEA ENSTTRP00000011192/1-872 KAELLLSQCP WKEYKSDTGK PYYYNNQSKE SRWTRPKDLD DLEALVKQEA BACU019859/1-865 KAELLLSQCP WKEYKSDTGK PYYYNNQSKE SRWTRPKDLD DLEALVKQEA 201 250 ENSP00000448073/1-892 AGKQQQQLPQ TLQPQPPQPQ PDPPPVPPGP TPVPTGLLEP EPGGSEDCDV ENSBTAP00000022067/1-872 AGKQQQ--PQ ALQPQPPQPQ PDPPPVPPGP TLLPTGLLEP EPGGSEDCAV bmy_05774T0/1-976 AGKRQQ--PR TLQPQPPQPQ PDPPPVPPGP TLVPTGLLEP EPGGSEDCDV ENSTTRP00000011192/1-872 AGKRQQ--PR TLQPQPSQPQ PDPPPVPPGP TLVPTGLLEP EPGGSEDCDV BACU019859/1-865 AGKRQQ--PR TLQPQPPQPQ PDPPPVPPGP TLVPTGLLEP EPGGSEDCDV 251 300 ENSP00000448073/1-892 LEATQPLEQG FLQQLEEGPS SS-GQHQ-PQ QEEEESKPEP ERSGLSWSNR ENSBTAP00000022067/1-872 SEAAQPLEQG FLQQPEEGPS SSAGQHQPPQ QEEEESKPEP ERSGLSWSNR bmy_05774T0/1-976 SEAAQPLEQG FLQQPEEGPS SSAGQHQPPQ QEEEESKPEP ERSGLSWSNR ENSTTRP00000011192/1-872 SEAAQPLEQG FLQQPEEGPS SSAGQHQPPQ QEEEESKPEP ERSGLSWSNR BACU019859/1-865 SEAAQPLEQG FLQQPEEGPS SSAGQHQPPQ QEEEESKPEP ERSGLSWSNR 301 350 ENSP00000448073/1-892 EKAKQAFKEL LRDKAVPSNA SWEQAMKMVV TDPRYSALPK LSEKKQAFNA ENSBTAP00000022067/1-872 EKAKQAFKEL LRDKAVPSNA SWEQAMKMVV TDPRYSALPK LSEKKQAFNA bmy_05774T0/1-976 EKAKQAFKEL LRDKAVPSNA SWEQAMKMVV TDPRYSALPK LSEKKQAFNA ENSTTRP00000011192/1-872 EKAKQAFKEL LRDKAVPSNA SWEQAMKMVV TDPRYSALPK LSEKKQAFNA BACU019859/1-865 EKAKQAFKEL LRDKAVPSNA SWEQAMKMVV TDPRYSALPK LSEKKQAFNA 351 400 ENSP00000448073/1-892 YKAQREKEEK EEARLRAKEA KQTLQHFLEQ HERMTSTTRY ---------- ENSBTAP00000022067/1-872 YKAQREKEEK EEARLRAKEA KQTLQHFLEQ HERMTSTTRY ---------- bmy_05774T0/1-976 YKAQREKEEK EEARLKAKEA KQTLQHFLEQ HERMTSTTRY RSGGRAGVGP ENSTTRP00000011192/1-872 YKAQREKEEK EEARLKAKEA KQTLQHFLEQ HERMTSTTRY ---------- BACU019859/1-865 YKAQREKEEK EEARLKAKEA KQTLQHFLEQ HERMTSTTRY ---------- 401 450 ENSP00000448073/1-892 ---------- ---------- ---RRAEQTF GELEVWAVVP ERDRKEVYDD ENSBTAP00000022067/1-872 ---------- ---------- ---RRAEQTF GELEVWAVVP ERDRKEVYDD bmy_05774T0/1-976 GNPENPRAQS LFSACLLTAH MLHRRAEQTF GELEVWAVVP ERDRKEVYDD ENSTTRP00000011192/1-872 ---------- ---------- ---RRAEQTF GELEVWAVVP ERDRKEVYDD BACU019859/1-865 ---------- ---------- ---RRAEQTF GELEVWAVVP ERDRKEVYDD 451 500 ENSP00000448073/1-892 VLFFLAKKEK EQAKQLRRRN IQALKSILDG MSSVNFQTTW SQAQQYLMDN ENSBTAP00000022067/1-872 VLFFLAKKEK EQAKQLRRRN IQALKSILDG MSSVNFQTTW SQAQQYLMDN bmy_05774T0/1-976 VLFFLAKKEK EQAKQLRRRN IQALKSILDG MSSVNFQTTW SQAQQYLMDN ENSTTRP00000011192/1-872 VLFFLAKKEK EQAKQLRRRN IQALKSILDG MSSVNFQTTW SQAQQYLMDN BACU019859/1-865 VLFFLAKKEK EQAKQLRRRN IQALKSILDG MSSVNFQTTW SQAQQYLMDN 501 550 ENSP00000448073/1-892 PSFAQDHQLQ NMDKEDALIC FEEHIRALER EEEEERERAR LRERRQQRKN ENSBTAP00000022067/1-872 PSFAQDHQLQ NMDKEDALIC FEEHIRALER EEEEERERAR LRERRQQRKN bmy_05774T0/1-976 PSFAQDHQLQ NMDKEDALIC FEEHIRALER EEEEERERAR LRERRQQRKN ENSTTRP00000011192/1-872 PSFAQDHQLQ NMDKEDALIC FEEHIRALER EEEEERERAR LRERRQQRKN BACU019859/1-865 PSFAQDHQLQ NMDKEDALIC FEEHIRALER EEEEERERAR LRERRQQRKN 551 600 ENSP00000448073/1-892 REAFQTFLDE LHETGQLHSM STWMELYPAV STDVRFANML GQPGSTPLDL ENSBTAP00000022067/1-872 REAFQTFLDE LHETGQLHSM STWMELYPAV STDIRFANML GQPGSTPLDL bmy_05774T0/1-976 REAFQTFLDE LHETGQLHSM STWMELYPAV STDVRFANML GQPGSTPLDL ENSTTRP00000011192/1-872 REAFQTFLDE LHETGQLHSM STWMELYPAV STDVRFANML GQPGSTPLDL BACU019859/1-865 REAFQTFLDE LHETGQLHSM STWMELYPAV STDVRFANML GQPGSTPLDL 601 650 ENSP00000448073/1-892 FKFYVEELKA RFHDEKKIIK DILKDRGFCV EVNTAFEDFA HVISFDKRAA ENSBTAP00000022067/1-872 FKFYVEELKA RFHDEKKIIK DILKDRGFCV EVNTAFEDFA HVISFDKRAA bmy_05774T0/1-976 FKFYVEELKA RFHDEKKIIK DILKDRGFCV EVNTAFEDFA HVISFDKRAA ENSTTRP00000011192/1-872 FKFYVEELKA RFHDEKKIIK DILKDRGFCV EVNTAFEDFA HVISFDKRAA BACU019859/1-865 FKFYVEELKA RFHDEKKIIK DILKDRGFCV EVNTAFEDFA HVISFDKRAA 651 700 ENSP00000448073/1-892 ALDAGNIKLT FNSLLEKAEA REREREKEEA RRMRRREAAF RSMLRQAVPA ENSBTAP00000022067/1-872 ALDAGNIKLT FNSLLEKAEA REREREKEEA RRLRRREAAF RSMLRQAVPA bmy_05774T0/1-976 ALDAGNIKLT FNSLLEKAEA REREREKEEA RRLRRREAAF RSMLRQAVPA ENSTTRP00000011192/1-872 ALDAGNIKLT FNSLLEKAEA REREREKEEA RRLRRREAAF RSMLRQAVPA BACU019859/1-865 ALDAGNIKLT FNSLLEKAEA REREREKEEA RRLRRREAAF RSMLRQAVPA 701 750 ENSP00000448073/1-892 LELGTAWEEV RERFVCDSAF EQITLESERI RLFREFLQVL E-TECQHLHT ENSBTAP00000022067/1-872 LELGTAWEEV RERFVCDSAF EQITLESERI RLFREFLQVL EQTECQHLHS bmy_05774T0/1-976 VELGTAWEEV RERFVCDSAF EQITLESERI RLFREFLQVL E-TECQHLHS ENSTTRP00000011192/1-872 VELGTAWEEV RERFVCDSAF EQITLESERI RLFREFLQVL EQTECQHLHS BACU019859/1-865 VELGTAWEEV RERFVCDSAF EQITLESERI RLFREFLQVL E-TECQHLHS 751 800 ENSP00000448073/1-892 KGRKHGRKGK KHHHKRSHSP S--------- ---------- ---------- ENSBTAP00000022067/1-872 KGRKHGRKGK KHHRKRSHSP S--------- ---------- ---------- bmy_05774T0/1-976 KGRKHGRKGK KHHHKRSHSP SVSWRVERMW GEAGLSGGNK SHFSCFSPTS ENSTTRP00000011192/1-872 KGRKHGRKGK KHHRKRSHSP S--------- ---------- ---------- BACU019859/1-865 KGRKHGRKGK KHHRKRSHSP S--------- ---------- ---------- 801 850 ENSP00000448073/1-892 ---------- ---------- ---------- ---------- ---GSESEEE ENSBTAP00000022067/1-872 ---------- ---------- ---------- ---------- ---GSESGDE bmy_05774T0/1-976 PPLEEDLRIP LALDSPLCPQ FPYLRASGAQ VTSVLTRICR SPQGSESEDE ENSTTRP00000011192/1-872 ---------- ---------- ---------- ---------- ---GSESEDE BACU019859/1-865 ---------- ---------- ---------- ---------- ---GSESEDE 851 900 ENSP00000448073/1-892 ELPPPSLRPP KRRRRNPSES GSEPSSSLDS VESGGAALGG RGSPSSH-LL ENSBTAP00000022067/1-872 ELPPPSLRPP KRRRRNPSES GSEPSSSLDS VESGGAALGG RGSPSSRLLL bmy_05774T0/1-976 ELPPPSLRPP RRRRRNPSES GSEPSSSLDS VESGGAALGG RGSPSSRLLL ENSTTRP00000011192/1-872 ELPPPSLRPP RRRRRNPSES GSEPSSSLDS VESGGAALGG RGSPSSRLLL BACU019859/1-865 ELPPPSLRPP RRRRRNPSES GSEPSSSLDS VESGGAALGR RGSPSSRLLL 901 950 ENSP00000448073/1-892 GADHGLRKAK KPKKKTKKRR HKSNSPESET DPEEKAGKES DEKEQEQDKD ENSBTAP00000022067/1-872 GSDHGLRKAK KPKKKTKKRR HKSNSPESET DPEEKAAKES DEKEPEQDKD bmy_05774T0/1-976 GSDHGLRKVK KPKKRTKKRR HKSNSPESET DPEEKAGKES DEKEPEQDKD ENSTTRP00000011192/1-872 GSDHGLRKVK KPKKRTKKRR HKSNSPESET DPEEKAGKES DEKEPEQDKD BACU019859/1-865 GSDHGLRKVK KPKKRTKKRR HKSNSPESET DPEEKAGKES DEKEPEQDKD 951 1000 ENSP00000448073/1-892 RELQQAELPN RSPGFGIKKE KTGWDTSESE LSEGELERRR RTLLQQLDDH ENSBTAP00000022067/1-872 RDLRRAELPN RSPAFGVKKE KTGWDTSESE LSEGELERRR RTLLQQLDDH bmy_05774T0/1-976 RDLRRAELPN RSAGFGIKKE KTGWDTSESE LSEGELERRR RTLLQQLDDH ENSTTRP00000011192/1-872 RDLRRAELPN RSAGFGIKKE KTGWDTSESE LSEGELERRR RTLLQQLDDH BACU019859/1-865 RDLRRAELPN RSAGFGIKKE KTGWDTSESE LSEGELERRR RTLLQQLDDH 1001 1050 ENSP00000448073/1-892 Q ENSBTAP00000022067/1-872 Q bmy_05774T0/1-976 Q ENSTTRP00000011192/1-872 Q BACU019859/1-865 Q