KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:03 2014 Check: 00 .. Name: ENSP00000262305/1-756 Len: 846 Check: 5284 Weight: 1.00 Name: ENSBTAP00000022068/1-738 Len: 846 Check: 9379 Weight: 1.00 Name: ENSTTRP00000008706/1-691 Len: 846 Check: 1403 Weight: 1.00 Name: bmy_01872T0/1-613 Len: 846 Check: 807 Weight: 1.00 Name: BACU009258/1-504 Len: 846 Check: 1634 Weight: 1.00 // 1 50 ENSP00000262305/1-756 MASAPPASPP GSEPPGPDPE -----PGGPD GPGA------ --AQLAPGPA ENSBTAP00000022068/1-738 PRARPPAPPR GCPRPPPRPE RLCLPPAAPL ASGTRAAAGG APMKMEPGRP ENSTTRP00000008706/1-691 PAPRLGSRPR D--------- -----PSWPA SPGA------ --AR------ bmy_01872T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU009258/1-504 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000262305/1-756 ELRLGAPVGG PDPQSPGLDE PAPGAAADGG ARWSAGPAPG LEGGPRDPGP ENSBTAP00000022068/1-738 ASPAGGPGPD PEPGGPG--- -APSAPARSP GLGPQDPAAG VDAG-RSPGW ENSTTRP00000008706/1-691 -----AQTQS PVPGAPA--- -APAPLG--- ---SPALAAG ADAG-RAPGR bmy_01872T0/1-613 --MVLGTVGS ISPDATC--- ---------- ------ALAG AVAG------ BACU009258/1-504 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000262305/1-756 SAPPPRSGPR GQLASPDAPG PGPRSEAPLP ELDPLFSWTE EPEECGPASC ENSBTAP00000022068/1-738 ERRPQRAGR- ---DPDPDPD PDSDPDLALP ELGPFFSWTM EPEGDGP--- ENSTTRP00000008706/1-691 ERQPQRSSR- ---DSDPDP- -------PLP ELGPLFSWMT EQEGDGP--- bmy_01872T0/1-613 ---------- ----TPEDP- ---------- ---------- ---------- BACU009258/1-504 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000262305/1-756 PESAPFRLQG SSSSHRARGE VDVFSPFPAP TAGELALEQG PGSPPQPSDL ENSBTAP00000022068/1-738 GHSASIRAQD FSRSHHLRGE VDFFPSFAAP EVGDSALELG PGDPDGPSDF ENSTTRP00000008706/1-691 PHSASGRAQD FSRSHHLRGE VDFFPSFASP AVGEPALELG PGDPDRPSDF bmy_01872T0/1-613 ---------- ---------- ---------- --MALTFSTA PCKPPASLNV BACU009258/1-504 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000262305/1-756 SQTHPLPSEP VGSQEDGPRL RAVFDALDGD GDGFVRIEDF IQFATVYGAE ENSBTAP00000022068/1-738 SQTHPLTSEP AGCPEDSPRL RAVFDALDGD GDGFVRIEDF VQFATVYGAE ENSTTRP00000008706/1-691 SQTCPLTSEP AGCPEDGPRL RAVFDALDGD GDGFVRIEDF VQFATVYGAE bmy_01872T0/1-613 ---------- ---------- ---------- ---------- ---------- BACU009258/1-504 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000262305/1-756 QVKDLTKYLD PSGLGVISFE DFYQGITAIR NG-DPDGQCY GGVASAQDEE ENSBTAP00000022068/1-738 QVTDLTRYLD PSGLGVISFE DFYRGIEAIR NG-DPDSP-L CSVTPAPDEE ENSTTRP00000008706/1-691 QVKDLTRYLD PSGLGVISFE DFYRGITAIR NG-DPDGQ-L CSVTPAPDEE bmy_01872T0/1-613 -VKDLTRYLD PSGLGVISFE DFYRGITAIR NGADPDGQ-L CSVTPAPDEE BACU009258/1-504 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000262305/1-756 PLACPDEFDD FVTYEANEVT DSAYMGSEST YSECETFTDE DTSTLVHPEL ENSBTAP00000022068/1-738 LPACPEEFDD FVTFEANEVT DSAYMGSEST YSECETFTDE DTGTLVPPE- ENSTTRP00000008706/1-691 PPACPEEFDD FVTFEANEVT DSAYMGSEST YSECETFTDE DTGTLVPPE- bmy_01872T0/1-613 PPACPEEFDD F----ANEVT DSAYMGSEST YSECETFTDE DTGTLVPPE- BACU009258/1-504 ---------- ---------- ----MGSEST YSECETFTDE DTGTLVPPE- 351 400 ENSP00000262305/1-756 QPEGDADSAG GSAVPSECLD AMEEPDHGAL LLLPGRPHPH GQSVITVIGG ENSBTAP00000022068/1-738 ---------- -------CLD AAEEPGHGAL LLLPGRSHLQ GQSVVAVIGG ENSTTRP00000008706/1-691 ---------- -------CLD ATEEPGHGAL LLLPGRSHLH SQSVVTVIGG bmy_01872T0/1-613 ---------- -------CLD ATEEPGHGAL LLLPG----- SQSVVTVIGG BACU009258/1-504 ---------- -------CLD ATEEPGHGAL LLLPGRSHLH SQSVVTVIGG 401 450 ENSP00000262305/1-756 EEHFEDYGEG SEAELSPETL CNGQLGCSDP AFLTP----- ---------- ENSBTAP00000022068/1-738 EEHFEDYGEG SEAELSPETL CGGDRGCRDP AFLTP----- ---------- ENSTTRP00000008706/1-691 EEHFEDYGEG SEAELSPETL CNGEHGCRDP IFLTP----- ---------- bmy_01872T0/1-613 EEHFEDYGEG SEAELSPETL CNGEHGCRDP VFLTPSADPL AAKLHSILTD BACU009258/1-504 EEHFEDYGEG SEAELSPETL CNGEHGCRDP VFLTPSADPL AAKLHSILTD 451 500 ENSP00000262305/1-756 ---------- ---------- ---------- SPTKRLSSKK VARYLHQSGA ENSBTAP00000022068/1-738 ---------- ---------- ---------- SPAKRLSSKK VARHLQQSGA ENSTTRP00000008706/1-691 ---------- ---------- ---------- SPSKRLSSKK VARHLHQSGA bmy_01872T0/1-613 EAFEFYCSQC HKQINRLEDL SARLNDLEKN SPSKRLSSKK VARHLHQSGA BACU009258/1-504 EAFEFYCSQC HKQINRLEDL SARLNDLEKN SPSKRLSSKK VARHLHQSGA 501 550 ENSP00000262305/1-756 LTMEALEDPS PELMEGPEED IADKVVFLER RVLELEKDTA ATGEQHSRLR ENSBTAP00000022068/1-738 LTMEALQDSP PGPVEGMDED IADKVVFLEK RVSELEKDTA ANGEQHSRLR ENSTTRP00000008706/1-691 LTMEALQDPP PDPVEGMEED IADKVVFLEK RVLELEKDTA ANGEQHSRLR bmy_01872T0/1-613 LTMEALQDPP PDPVEGMEED IADKVVFLEK RVLELEKDTA ANGEQHSRLR BACU009258/1-504 LTMEGLQDPP PDPVEGMEED IADKVVFLEK RVSELEKDTA ANGEQHSRLR 551 600 ENSP00000262305/1-756 QENLQLVHRA NALEEQLKEQ ELRACEMVLE ETRRQKELLC KMEREKSIEI ENSBTAP00000022068/1-738 QENLQLVHRA NALEEQLKEQ ELRACEMVLE ETRKQKELLC KMEREKSIEI ENSTTRP00000008706/1-691 QENLQLVHRA NALEEQLKEQ ELRACEMVLE ETRKQKELLC KMEREKSIEI bmy_01872T0/1-613 QENLQLVHRA NALEEQLKEQ ELRACEMVLE ETRKQKELLC KMEREKSIEI BACU009258/1-504 QENLQLVHRA NALEEQLKEQ ELRACEMVLE ETRKQKELLC KMEREKSIEI 601 650 ENSP00000262305/1-756 ENLQTRLQQL DEENSELRSC TPCLKANIER LEEEKQKLLD EIESLTLRLS ENSBTAP00000022068/1-738 ENLQARLQQL DEENSELRSC TPCLKANIER LEEEKQKLLD EIEELSVRLS ENSTTRP00000008706/1-691 ENLQARLQQL DEENSELRSC MPCLKASIER LEEEKQKLLD EIEELSLRLS bmy_01872T0/1-613 ENLQARLQQL DEENSELRSC TPCLKASIER LEEEKQKLLD EIEELSLRLS BACU009258/1-504 ENLQARLQQL DEENSELRSC TPCLKANIER LEEEKQKLLD EIEELSLQLS 651 700 ENSP00000262305/1-756 EEQENKRRMG DRLSHERHQF QRDKEATQE- ---------- ---------- ENSBTAP00000022068/1-738 DEQENRRKLG DRLSHERHQF QRDKEATQE- ---------- ---------- ENSTTRP00000008706/1-691 EEQENRRKLG DRLSHERHQF QRDKEATQE- ---------- ---------- bmy_01872T0/1-613 EEQENRRKLG DRLSHERHQF QRDKEATQEV STEPRGPPPH WRSDRPRGPE BACU009258/1-504 EEQENRRKLG DRLSHERHQF QRDKEATQEV STEPRGPPPH WHSDRPRGPE 701 750 ENSP00000262305/1-756 ---------- LIEDLRKQLE HLQLLKLEAE QRRGRSSSMG LQEYHSRARE ENSBTAP00000022068/1-738 ---------- LIEDLRKQLE HLQLFKLEAE QRRGRSSSAG LQEYHSRTRE ENSTTRP00000008706/1-691 ---------- LIEDLRKQLE HLQLFKLEAE QRRGRSSSAG LQEYNSRTRE bmy_01872T0/1-613 AKLSQPPLLQ LIEDLRKQLE HLQLFKLEAE QRRGRSSSAG LQEYNSRTRE BACU009258/1-504 AKLRQPPLLQ LIEDLRKQLE HLQLFKLEAE QRRGRSSSAG LQEYNSRTRE 751 800 ENSP00000262305/1-756 SELEQEVRRL KQDNRNLKEQ NEELNGQIIT LSIQGAKSLF STAFSESLAA ENSBTAP00000022068/1-738 SELEQEVRRL KQDNRSLKEQ NDELNGQIIN LSIQGARSLF STAFSESLAA ENSTTRP00000008706/1-691 SELEQEVRRL KQDNRSLKEQ NDELNGQIIN LSIQGAKNLF STAFSESLAA bmy_01872T0/1-613 SELEQEVRRL KQDNRSLKEQ NDELNGQIIN LSIQGAKNLF STAFSESLAA BACU009258/1-504 SELEQEVRRL KQDNRSLKEQ NDELNGQIIN LSIQGAKNLF STAFSESLAA 801 850 ENSP00000262305/1-756 EISSVSRDEL MEAIQKQEEI NFRLQDYIDR IIVAIMETNP SILEVK ENSBTAP00000022068/1-738 EISSVSRDEL MDAIQKQEEI NFRLQDYIDR IIVAIMETNP SILEVK ENSTTRP00000008706/1-691 EISSVSRDEL MDAIQKQEEI NFRLQDYIDR IIVAIMETNP SILEVK bmy_01872T0/1-613 EISSVSRDEL MDAIQKQEEI NFRLQDYIDR IIVAIMETNP SILEVK BACU009258/1-504 EISSVSRDEL MDAIQKQEEI NFRLQDYIDR IIVAIMETNP SILEVK