KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:09 2014 Check: 00 .. Name: ENSTTRP00000006237/1-929 Len: 930 Check: 7758 Weight: 1.00 Name: ENSBTAP00000022108/1-928 Len: 930 Check: 6232 Weight: 1.00 Name: ENSP00000356130/1-929 Len: 930 Check: 980 Weight: 1.00 Name: bmy_02392T0/1-820 Len: 930 Check: 3263 Weight: 1.00 Name: BACU009869/1-929 Len: 930 Check: 8396 Weight: 1.00 // 1 50 ENSTTRP00000006237/1-929 MEGDGVPWGS EPVSGPGPGG GGMIRELCRG FGRYRRYLGR LRQNLRETQK ENSBTAP00000022108/1-928 MEGDGVPWGS EPESGPGPGG GGVIRELCRG FGRYRRYLGR LRQNLRDTQK ENSP00000356130/1-929 MEGDGVPWGS EPVSGPGPGG GGMIRELCRG FGRYRRYLGR LRQNLRETQK bmy_02392T0/1-820 ---------- ---------- --MICELCRG FGRYRRYLGR LRQNLRETQK BACU009869/1-929 MEGDGVPWES ESVSGPGPGG GGMIRELCRG FGRYRRYLGR LRQNLRETQK 51 100 ENSTTRP00000006237/1-929 FFRDIKGSHN HSCPSSPTEG GGAERGPAGD VAEIGLQAGQ LSCISFPPKE ENSBTAP00000022108/1-928 FFRDLRGSQP RGCPSSPAEG GEAGRGPAGD VAATGLPAGQ LSCISFPPKE ENSP00000356130/1-929 FFRDIKCSHN HTCLSSLTGG GGAERGPAGD VAETGLQAGQ LSCISFPPKE bmy_02392T0/1-820 FFRDIKGSHN HSCPSSPTEG GGAERGPAGD VAEIGLQAGQ LSCISFPPKE BACU009869/1-929 FFRDIKGSHN HSCPSSPTEG GGGERGPAGD VAEIGLQAGQ LSCISFPPKE 101 150 ENSTTRP00000006237/1-929 EKHLQQIVDC LPCILILGQD CSVKCQLLNL LLGVQVLPTT KLGSEENCKL ENSBTAP00000022108/1-928 EKRLQQMVDC LPCILILGQD CSVKCQLLNL LLGVQVLPTN KLGG-ENCKL ENSP00000356130/1-929 EKYLQQIVDC LPCILILGQD CNVKCQLLNL LLGVQVLPTT KLGSEESCKL bmy_02392T0/1-820 EKYLQQIVDC LPCILILGQD CNVKCQLLNL LLGVQVLPTT KLGSEENCKL BACU009869/1-929 EKYLQQIVDC LPCILILGQD CNVKCQLLNL LLGLQVLPTT KLGNEENCKL 151 200 ENSTTRP00000006237/1-929 RRLRFTYGTQ TRVSLALPGQ YELVHTLVAH QGNWDTIPEE DLEVQEDSED ENSBTAP00000022108/1-928 RRLRFTYGTQ TRVSLALPDR YELVHTLAAH QGTWETVPEE DLEAREDSED ENSP00000356130/1-929 RRLRFTYGTQ TRVSLALPGQ YELVHTLVAH QGNWETIPEE DLEVQENNED bmy_02392T0/1-820 RRLXFTYGTQ TRVSLALPGQ YELVHTLVAH QGNWETIPEE DLEVQEDSED BACU009869/1-929 RRLRFTYGTQ TRVSLALPGQ YELVHTLVAH QGNWETIPEE DLEVQEDSED 201 250 ENSTTRP00000006237/1-929 AAHVLAELEV TMHHALLQXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022108/1-928 AARVLAELEV TMRHALLQEV DIVVAPCQGL RPTVDVLSDL VNDFLPVITY ENSP00000356130/1-929 AAHVLAELEV TMHHALLQEV DVVVAPCQGL RPTVDVLGDL VNDFLPVITY bmy_02392T0/1-820 AAHVLAELEV TMHHALLQEV DIVVAPCQGL RPTVDVLGDL VNDFLPVITY BACU009869/1-929 AAHVLAELEV TMHHALLQEV DIVVAPCQGL RPTVDVLGDL VNDFLPVITY 251 300 ENSTTRP00000006237/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022108/1-928 ALHKDELSER DEQELQEIRK YFSFPIFFFK VPKLGSEIID SSTERMESER ENSP00000356130/1-929 ALHKDELSER DEQELQEIRK YFSFPVFFFK VPKLGSEIID SSTRRMESER bmy_02392T0/1-820 ALHKDELSER DEQELQEIRK YFSFPVFFFK VPKLGSEIIG SSTRRMENER BACU009869/1-929 ALHKDELSER DEQELQEIRK YFSFPIFFFK VPKLGSEIIS SSTRRMENER 301 350 ENSTTRP00000006237/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022108/1-928 SPLHRQLTDL GYLSSSLCNC GAPGQDTKAQ SMLVEQSEKL RHLNTFSHQV ENSP00000356130/1-929 SPLYRQLIDL GYLSSSHWNC GAPGQDTKAQ SMLVEQSEKL RHLSTFSHQV bmy_02392T0/1-820 SPLHRQLTDL GYLSSSHCNC GTPSQDTKAQ SMLVEQSEKL RHLNTFSHQV BACU009869/1-929 SPLHRQLTDL GYLSSSHCNC GTPSQDTKAQ SMLVEQSEKL RHLNTFSHQV 351 400 ENSTTRP00000006237/1-929 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTP-R LEYTRKKENE ENSBTAP00000022108/1-928 LQTRLVDAAK ALNLVHCRCL DIFINQAFDM QRDLQITPKR LEYTRKKENE ENSP00000356130/1-929 LQTRLVDAAK ALNLVHCHCL DIFINQAFDM QRDLQITPKR LEYTRKKENE bmy_02392T0/1-820 LQTHLVDAAK ALNLVHCRCL DIFINQAFDM QRDLQITPKR LEYTRKKENE BACU009869/1-929 LQTHLVDAAK ALNLVHCRCL DIFINQAFDM QRDLQITPKR LEYTRKKENE 401 450 ENSTTRP00000006237/1-929 LYESLMNIAN RKQEEMKDMI VETLNTMKEE LLDDAANMEF KDVIVPENGE ENSBTAP00000022108/1-928 LYESLMNIAN RKQEEMKDMI VETLNTMKEE LLDDAANMEF KDVIVPENGE ENSP00000356130/1-929 LYESLMNIAN RKQEEMKDMI VETLNTMKEE LLDDATNMEF KDVIVPENGE bmy_02392T0/1-820 LYESLMNIAN RKQEEMKDMI VETLNTMKEE LLDDAANMEF KDVIVPENGE BACU009869/1-929 LYESLMNIAN RKQEEMKDMI VETLNTMKEE LLDDAADMEF KDVIVPENGE 451 500 ENSTTRP00000006237/1-929 PVGTREIKCC IRQIQELIIS RLNQAVANKL ISSVDYLRES FVGTLERCLQ ENSBTAP00000022108/1-928 PVGTREIKCC IRQIQELIIS RLNQAVANKL ISSVDYLRES FVGTLERCLQ ENSP00000356130/1-929 PVGTREIKCC IRQIQELIIS RLNQAVANKL ISSVDYLRES FVGTLERCLQ bmy_02392T0/1-820 PVGTREIKCC IRQIQELIIS RLNQAVANKL ISSVDYLRES FVGTLERCLQ BACU009869/1-929 PVGTREIKCC IRQIQELIIS RLNQAVANKL ISSVDYLRES FVGTLERCLQ 501 550 ENSTTRP00000006237/1-929 SLEKSQDVSV HITSNYLKQI LNAAYHVEVT FHSGSSVTSX XXXXXXXXII ENSBTAP00000022108/1-928 SLEKSQDVSV HITSNYLKQI LNAAYHVEVT FHSGSSVT-R MLWEQIKQII ENSP00000356130/1-929 SLEKSQDVSV HITSNYLKQI LNAAYHVEVT FHSGSSVT-R MLWEQIKQII bmy_02392T0/1-820 SLEKSQDVSV HITSNYLKQI LNAAYHVEVT FHSGSSVT-R MLWEQIKQII BACU009869/1-929 SLEKSQDVSV HITSNYLKQI LNAAYHVEVT FHSGSSVT-R MLWEQIKQII 551 600 ENSTTRP00000006237/1-929 QRITWVSPPA ITLEWKRKVA QEAIESLSAS KLAKSICSQF RTRLNSSHEA ENSBTAP00000022108/1-928 QRITWVSPPA ITLEWKRKVA QEAIESLSAS KLAKSICSQF RTRLNSSHEA ENSP00000356130/1-929 QRITWVSPPA ITLEWKRKVA QEAIESLSAS KLAKSICSQF RTRLNSSHEA bmy_02392T0/1-820 QRITWVSPPA ITLEWKRKVA QEAIESLSAS KLAKSICSQF RTRLNSSHEA BACU009869/1-929 QRITWVSPPA ITLEWKRKVA QEAIESLSAS KLAKSICSQF RTRLNSSHEA 601 650 ENSTTRP00000006237/1-929 FAASLRQLEA GHSGRLEKTE DLWLKVRKDH APRLARLSLE SRSLQDVLLH ENSBTAP00000022108/1-928 FAASLRQLEA GHSGRLEKTE DLWLKVRKDH APRLARLSLE SRSLQDVLLH ENSP00000356130/1-929 FAASLRQLEA GHSGRLEKTE DLWLRVRKDH APRLARLSLE SCSLQDVLLH bmy_02392T0/1-820 FAASLRQVG- ---------- ---------- ---------- ---------- BACU009869/1-929 FAASLRQLEA GHSGRLEKTE DLWLKVRKDH APRLARLSLE SRSLQDVLLH 651 700 ENSTTRP00000006237/1-929 RKPKLGQELG RGQYGVVYLC DNWGGHFPCA LKSVVPPDEK HWNDLALEFH ENSBTAP00000022108/1-928 RKPKLGQELG RGQYGVVYLC DSWGGHFPCA LKSVVPPDEK HWNDLALEFH ENSP00000356130/1-929 RKPKLGQELG RGQYGVVYLC DNWGGHFPCA LKSVVPPDEK HWNDLALEFH bmy_02392T0/1-820 -KPKLGQELG RGQYGVVYLC DNWGGHFPCA LKSVVPPDEK HWNDLALEFH BACU009869/1-929 RKPKLGQELG RGQYGVVYLC DNWGGHFPCA LKSVVPPDEK HWNDLALEFH 701 750 ENSTTRP00000006237/1-929 YMRSLPKHER LVDLHGSVID YNYGGGSSIA VLLIMERLHR DLYSGLKAGL ENSBTAP00000022108/1-928 YMRSLPKHER LVDLHGSVID YSYGGGSSIA VLLIMERLHR DLYTGLKAGL ENSP00000356130/1-929 YMRSLPKHER LVDLHGSVID YNYGGGSSIA VLLIMERLHR DLYTGLKAGL bmy_02392T0/1-820 YMRSLPKHER LVDLHGSVID YNYGGGSSIA VLLIMERLHR DLYSGLKAGL BACU009869/1-929 YMRSLPKHER LVDLHGSVID YNYGGGSSIA VLLIMERLHR DLYSGLKAGL 751 800 ENSTTRP00000006237/1-929 TLETRLQIAL DVVEGIRFLH SQGLVHRDIK LKNVLLDKQN RAKITDLGFC ENSBTAP00000022108/1-928 ALETRLQIAL DVVEGIRFLH SQGLVHRDVK LKNVLLDKQN RAKITDLGFC ENSP00000356130/1-929 TLETRLQIAL DVVEGIRFLH SQGLVHRDIK LKNVLLDKQN RAKITDLGFC bmy_02392T0/1-820 TLETRLQIAL DVVEGIRFLH SQGLVHRDIK LKNVLLDKQN RAKITDLGFC BACU009869/1-929 TLETRLQIAL DVVEGIRFLH SQGLVHRDIK LKNVLLDKQN RAKITDLGFC 801 850 ENSTTRP00000006237/1-929 KPEAMMSGSI VGTPIHMAPE LFTGKYDNSV DVYAFGILFW YICSGSVKLP ENSBTAP00000022108/1-928 KPEAMMSGSI VGTPIHMAPE LFTGKYDNSV DVYAFGILFW YICSGSVKLP ENSP00000356130/1-929 KPEAMMSGSI VGTPIHMAPE LFTGKYDNSV DVYAFGILFW YICSGSVKLP bmy_02392T0/1-820 KPEAMMSGSI VGTPIHMAPE LFT------- ---------- ---------- BACU009869/1-929 KPEAMMSGSI VGTPIHMAPE LFTGKYDNSV DVYAFGILFW YICSGSVKLP 851 900 ENSTTRP00000006237/1-929 EAFERCASKD HLWNNVRRXX XXXXXXXXXX XXXXXXXXXX XXXPSQRPLL ENSBTAP00000022108/1-928 EAFERCASKD HLWNNVRRGA RPERLPVFDE ECWQLMEACW DGDPSQRPLL ENSP00000356130/1-929 EAFERCASKD HLWNNVRRGA RPERLPVFDE ECWQLMEACW DGDPLKRPLL bmy_02392T0/1-820 ---------- --------GA RPERLPVFDE ECWQLMEACW DGDPSQRPLL BACU009869/1-929 EAFERCASKD HLWNNVRRGA RPERLPVFDE ECWQLMEACW DGDPSQRPLL 901 950 ENSTTRP00000006237/1-929 GIVQPMLLGI MDRLCKSHSE RPNRGLDDST ENSBTAP00000022108/1-928 GIVQPMLQGI MDRLCKSHSE RPNRGLDDST ENSP00000356130/1-929 GIVQPMLQGI MNRLCKSNSE QPNRGLDDST bmy_02392T0/1-820 GIVQPMLQGI MDRLCKSHSE RPNRGLDDST BACU009869/1-929 GIVQPMLQGI MDRLCKSHSE RPNRGLDDST