KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:10 2014 Check: 00 .. Name: BACU016581/1-518 Len: 593 Check: 3870 Weight: 1.00 Name: ENSTTRP00000000542/1-353 Len: 593 Check: 829 Weight: 1.00 Name: ENSP00000322617/1-447 Len: 593 Check: 6776 Weight: 1.00 Name: bmy_10430T0/1-401 Len: 593 Check: 8296 Weight: 1.00 Name: ENSBTAP00000022113/1-447 Len: 593 Check: 4955 Weight: 1.00 // 1 50 BACU016581/1-518 MERGWLHGEG FLLCLILHLL LQGRGDNFII TCSGFDQHGV DPAAFQAVFD ENSTTRP00000000542/1-353 MEGGWPARRG IVLCFTISLL LQH------- ---------- ---------- ENSP00000322617/1-447 MEGGWPARQS ALLCLTVSLL LQGRGDAFTI NCSGFDQHGV DPAVFQAVFD bmy_10430T0/1-401 ---------- -------SLF STGRANTFSI NCSVFDQRGV DPAVFQAIFN ENSBTAP00000022113/1-447 MEGWWSTTGG FFLCLSASLV LQGRANTFTI NCSGFDQQGV DPTVFQSVFN 51 100 BACU016581/1-518 RKAFRPVTNF SIPTHVHISF TLSAN----- ---------- LEVMWYNPFL ENSTTRP00000000542/1-353 ---------- ---------- ---------- ---------- ---------- ENSP00000322617/1-447 RKAFRPFTNY SIPTRVNISF TLSAILGVDA QLQLLTSFLW MDLVWDNPFI bmy_10430T0/1-401 QKDFRPVINY SIPTHINISF TLSAS----- ---------- LKVIWSHPFI ENSBTAP00000022113/1-447 KKDFRPVTNF SIPTRINISF TLSAILEVDA QLQLLTSFLW LKLSWNHPFI 101 150 BACU016581/1-518 RWNPVECWGI RKLSVAAENL WLPDIFIEEF MDMDQTPPGL MAYVSSDDHI ENSTTRP00000000542/1-353 ---------- ---TVSAENL WLPDIIIMEF VDVDQGPPGL TAYVSSEGRI ENSP00000322617/1-447 NWNPKECVGI NKLTVLAENL WLPDIFIVES MDVDQTPSGL TAYISSEGRI bmy_10430T0/1-401 SWDPEECGDI NKLTLTAENL WLRDIFIVES NDVDHTLDGL SACVTNEGRV ENSBTAP00000022113/1-447 SWDPEECGDI KKLAITAENL WLPDIFIVES MDVDQTPDGL SAYVSNDGHV 151 200 BACU016581/1-518 EYSKPMQVTS ICNLDIFYFP FDEQNCTLTS SSFIYT---- ---------- ENSTTRP00000000542/1-353 Q-DRPMKVTS TCNLDIFHF- FDQQNXXXXX XXXXXXXDSM LLGMDKELWV ENSP00000322617/1-447 KYDKPMRVTS ICNLDIFYFP FDQQNCTFTF SSFLYTVDSM LLGMDKEVWE bmy_10430T0/1-401 VYNKPMQVTS ICSLDI-YFS FDQKNCTLTF SSFLYT---- -------VWE ENSBTAP00000022113/1-447 VYNKPMRVTS ICNLDIFYFP FDQQNCTLTF SSFLYTEERM LLGMDKEVWE 201 250 BACU016581/1-518 ---------- --------GD HQAQAQPLVP R--------- ---------- ENSTTRP00000000542/1-353 ITDTSRNVIL TQG-W-LLNI DKATPETLVD SNLYDQIMFF VAIRRRPSLY ENSP00000322617/1-447 ITDTSRKVIQ TQGEWELLGI NKATPKMSMG NNLYDQIMFY VAIRRRPSLY bmy_10430T0/1-401 ITDTSRDTGH TQGEWELLGI NKATPKISVG SSLFDQIMFY V----RPEI- ENSBTAP00000022113/1-447 IMDDSRDRGR TKGEWELLGI NKATPKMSVG TSLFDQIMFY VAIRRRPTLY 251 300 BACU016581/1-518 VISLLVPSSF LIAIDAL--S FYLLA-ESES YAPFKMTLLL GYNVFLLMTL ENSTTRP00000000542/1-353 VISLLVPRSF LIAIDTL--S FFLPA-ESEN RAPFKMTLLL GYNVFLLMTL ENSP00000322617/1-447 IINLLVPSSF LVAIDAL--S FYLPA-ESEN RAPFKITLLL GYNVFLLM-M bmy_10430T0/1-401 LAWLSIPHIF LILSDSHRRP QLLPAVESES RAPFKMTLLL GYSVFLLM-M ENSBTAP00000022113/1-447 VINLLVPSSF LVAIDAL--S FYLPA-ENEN RAPFKMTLLL GYNVFLLN-I 301 350 BACU016581/1-518 NDLLPASGTP PHQYGPSLHQ EKKSKMWDNP FISWNPEEYV SNNKLTASSA ENSTTRP00000000542/1-353 NDLLPASGTP P--------- ---------- ---------- ---------- ENSP00000322617/1-447 NDLLPASGTP L--------- ---------- ---------- ---------- bmy_10430T0/1-401 NDLLPASGTS L--------- ---------- ---------- ---------- ENSBTAP00000022113/1-447 SDLLPATGTS L--------- ---------- ---------- ---------- 351 400 BACU016581/1-518 ENLWLPNIII MQFVDVDRGP PGLTACVSSK GRIQYDRPMK VTSTCNLDIY ENSTTRP00000000542/1-353 ---------- ---------- ---------- ---------- ------ISVY ENSP00000322617/1-447 ---------- ---------- ---------- ---------- ------ISVY bmy_10430T0/1-401 ---------- ---------- ---------- ---------- ------IGVY ENSBTAP00000022113/1-447 ---------- ---------- ---------- ---------- ------FSVY 401 450 BACU016581/1-518 FPFDQLNCTF TFSSLLYTGD HQAQAQPLVP RVISLLVPSS FLIAIDVLSF ENSTTRP00000000542/1-353 FAL------- ---------- ---------- -CLSLMVVH- -LLETIFITY ENSP00000322617/1-447 FAL------- ---------- ---------- -CLSLMVVS- -LLETVFITY bmy_10430T0/1-401 FAL------- ---------- ---------- -CLSLMVVS- -LLETIFITY ENSBTAP00000022113/1-447 FAL------- ---------- ---------- -CLSLMVLS- -LLETIFITY 451 500 BACU016581/1-518 YLLAESESYA PFKMTLMLGY NVFLLMTLND LRPASGTPPH Q------YGP ENSTTRP00000000542/1-353 LLHLATTQPP PRPRWLRS-- ---LLLHCTS PRKCCPAAPQ K-NTGLGLSP ENSP00000322617/1-447 LLHVATTQPP PMPRWLHS-- ---LLLHCTS PGRCCPTAPQ KGNKGLGLTL bmy_10430T0/1-401 LLHPATTQPP PMPRCLHP-- ---LLLYCTS PXKCCPAALW KEDVGLGLTP ENSBTAP00000022113/1-447 LLHLATTQPP PMPRWLHS-- ---LLLRHAS PRTCCPAVPQ KENTSLGLIS 501 550 BACU016581/1-518 SHFPGKQRQQ GTWWEAGVKE PVELVGKVPG PREAELNGCP GSARAQQEED ENSTTRP00000000542/1-353 AHLP------ ------GVKE PVELVGKAPG PREAELNGCP GSVRAQQED- ENSP00000322617/1-447 THLP------ ------GPKE PGELAGKKLG PRETEPDGGS GWTKTQLME- bmy_10430T0/1-401 THLS------ ------GQKE PGELGGKELG PRGAELNGGS GWTRARLAD- ENSBTAP00000022113/1-447 THLS------ ------GLKE PGKLGGKELG PKEAELNGGT GLTRAQLAD- 551 600 BACU016581/1-518 EAQKQHSVSL WLQLSHVTDT LLFRLRLLFP APSVVTVIIL WDT ENSTTRP00000000542/1-353 ---------L WMQFSHMMDT LLFSLYLLFL APSIVTVIIL WNT ENSP00000322617/1-447 ---------L WVQFSHAMDT LLFRLYLLFM ASSILTVIVL WNT bmy_10430T0/1-401 ---------L WVQFSHMMDT LLFRIYLLFL ATSITTVIIL WNT ENSBTAP00000022113/1-447 ---------L WVQFGHMMDN LLFRIYLLFL ATSVTTILVL WNT