KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:11 2014 Check: 00 .. Name: ENSTTRP00000010954/1-565 Len: 741 Check: 7136 Weight: 1.00 Name: ENSBTAP00000022119/1-468 Len: 741 Check: 1603 Weight: 1.00 Name: BACU016039/1-544 Len: 741 Check: 6831 Weight: 1.00 Name: bmy_16746T0/1-687 Len: 741 Check: 1434 Weight: 1.00 Name: ENSP00000329918/1-569 Len: 741 Check: 5491 Weight: 1.00 // 1 50 ENSTTRP00000010954/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022119/1-468 ---------- ---------- ---------- ---------- ---------- BACU016039/1-544 ---------- ---------- ---------- ---------- ---------- bmy_16746T0/1-687 TLLSLACSLL ARHCGQPAGH LGGTRGRRSS SAPTPPASRS GVGTQAGAPA ENSP00000329918/1-569 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010954/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022119/1-468 ---------- ---------- ---------- ---------- ---------- BACU016039/1-544 ---------- ---------- ---------- ---------- ---------- bmy_16746T0/1-687 ATARRGPQGA THSSRRRERS NGALCSRPAS PPLTTRFPAA FVAAVSRRRA ENSP00000329918/1-569 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010954/1-565 ---------- --MPSSLFAD LERNGS---- ----GGGGGG GSGGGETLDD ENSBTAP00000022119/1-468 ---------- ---------- ---------- ---------- ---------- BACU016039/1-544 ---------- ---------- ---------- ---------- ---------- bmy_16746T0/1-687 EGRRGRGAHG RAMPSSLFAD LERNGSGGGG GGGGGGGGGG GSGGGETLDD ENSP00000329918/1-569 ---------- --MPSSLFAD LERNGS---- ----GGGGGG SSGGGETLDD 151 200 ENSTTRP00000010954/1-565 QRALQLALDQ LSLLGLDSDE GASLYDSEPR KKSVNMTECV PVPSSEHVAE ENSBTAP00000022119/1-468 ---------- ---------- ---------- ---------- ---------- BACU016039/1-544 ---------- ---------- ---------- -----MTECV PVPSSEHVAE bmy_16746T0/1-687 QRALQLALDQ LSLLGLDSDE GASLYDSEPR KKSVNMTECV PVPSSEHVAE ENSP00000329918/1-569 QRALQLALDQ LSLLGLDSDE GASLYDSEPR KKSVNMTECV PVPSSEHVAE 201 250 ENSTTRP00000010954/1-565 IVGRQXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022119/1-468 --GLPGCKIK ALRAKTNTYI KTPVRGEEPV FVVTGRKEDV AMARREIISA BACU016039/1-544 IVGRQGCKIK ALRAKTNTYI KTPVRGEEPV FVVTGRKEDV AMARREIISA bmy_16746T0/1-687 IVGRQGCKIK ALRAKTNTYI KTPVRGEEPV FVVTGRKEDV AMARREIISA ENSP00000329918/1-569 IVGRQGCKIK ALRAKTNTYI KTPVRGEEPV FVVTGRKEDV AMARREIISA 251 300 ENSTTRP00000010954/1-565 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022119/1-468 AEHFSMIRAS RNKNTALNGA VPGPPNLPGQ TTIQVRVPYR VVGLVVGPKG BACU016039/1-544 AEHFSMIRAS RNKNTALNGA VPGPPNLPGQ TTIQVRVPYR VVGLVVGPKG bmy_16746T0/1-687 AEHFSMIRAS RNKNTALNGA VPGPPNLPGQ TTIQVRVPYR VVGLVVGPKG ENSP00000329918/1-569 AEHFSMIRAS RNKNTALNGA VPGPPNLPGQ TTIQVRVPYR VVGLVVGPKG 301 350 ENSTTRP00000010954/1-565 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022119/1-468 ATIKRIQQQT HTYIVTPSRD KEPVFEVTGM PENVDRAREE IEAHIALRTG BACU016039/1-544 ATIKRIQQQT HTYIVTPSRD KEPVFEVTGM PENVDRAREE IEAHIALRTG bmy_16746T0/1-687 ATIKRIQQQT HTYIVTPSRD KEPVFEVTGM PENVDRAREE IEAHIALRTG ENSP00000329918/1-569 ATIKRIQQQT HTYIVTPSRD KEPVFEVTGM PENVDRAREE IEAHIALRTG 351 400 ENSTTRP00000010954/1-565 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022119/1-468 GIIELTDEND FHANGTDVGF DLHHGSGGSG PGSLWSKPTP SITPTPGRKP BACU016039/1-544 GIIELTDEND FHANGTDVGF DLHHGSGGSG PGSLWSKPTP SITPTPGRKP bmy_16746T0/1-687 GIIELTDEND FHANGTDVGF DLHHGSGGSG PGSLWSKPTP SITPTPGRKP ENSP00000329918/1-569 GIIELTDEND FHANGTDVGF DLHHGSGGSG PGSLWSKPTP SITPTPGRKP 401 450 ENSTTRP00000010954/1-565 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXFAHN ENSBTAP00000022119/1-468 FSSYRNDSSS SLGSASTDSY FGAGTSGSAA ATPRLADYSP PSPALSFAHN BACU016039/1-544 FSSYRNDSSS SLGSASTDSY FGGGTSGSAA ATPRLADYSP PSPALSFAHN bmy_16746T0/1-687 FSSYRNDSSS SLGSASTDSY FGGGTSGSAA ATPRLADYSP PSPALSFAHN ENSP00000329918/1-569 FSSYRNDSSS SLGSASTDSY FGGGTSSSAA ATQRLADYSP PSPALSFAHN 451 500 ENSTTRP00000010954/1-565 G-NNNNGNGY TY----TA-E EASV-FPDEL SELQPTSTRA PA-PPGAPLL ENSBTAP00000022119/1-468 GNNNNNGNGY TYAAAAAAGG EASVPSPDGC PELPPAFDPA PAPPPGAPLL BACU016039/1-544 G-NNNNGNGY TY----TA-G EASVPSPDGC PELQPTFDPA PAPPPGAPLL bmy_16746T0/1-687 G-NNNNGNGY TY----TA-G EASVPSPDGC PELQPTFDPA PAPPPGAPLL ENSP00000329918/1-569 GNNNNNGNGY TY----TAGG EASVPSPDGC PELQPTFDPA PAPPPGAPLI 501 550 ENSTTRP00000010954/1-565 WAQFERSPGG GPAAPVSSSC SSSASSSASS SSVVFPGGGA SAPSNANLGL ENSBTAP00000022119/1-468 WAQFERSPGG GPAAPA---- ---------- ---------- -----ANLGL BACU016039/1-544 WAQFERSPGG GPAAPVSSSC SSSASSSASS SSVVFPGGGA SAPSNANLGL bmy_16746T0/1-687 WAQFERSPGG GPAAPVSSSC SSSASSSASS SSVVFPGGGA SAPSNANLGL ENSP00000329918/1-569 WAQFERSPGG GPAAPVSSSC SSSASSSASS SSVVFPGGGA SAPSNANLGL 551 600 ENSTTRP00000010954/1-565 LVHRRLHPGT SCPRLSPPL- ---------- ---------- ---------- ENSBTAP00000022119/1-468 PVHRRLHPGA SCPRLSPPL- ---------- ---------- ---------- BACU016039/1-544 LVHRRLHPGT SCPRLSPPLX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16746T0/1-687 LVHRRLHPGT SCPRLSPPL- ---------- ---------- ---------- ENSP00000329918/1-569 LVHRRLHPGT SCPRLSPPL- ---------- ---------- ---------- 601 650 ENSTTRP00000010954/1-565 ---------- -HMAPGAGEH HLARRVRSDP GGGGLAYAAY ANGLGAQLP- ENSBTAP00000022119/1-468 ---------- -HMAPGAGEH HLARRVRSDP GGGGLAYAAY ANGLGAQLPA BACU016039/1-544 XXXXXXXXXX XHMAPGRCEP HLARRVRSDP GGGGLAYAAY ANGLGGQQP- bmy_16746T0/1-687 ---------- -HMAPGAGEH HLARRVRSDP GGGGLAYAAY ANGLGAQLP- ENSP00000329918/1-569 ---------- -HMAPGAGEH HLARRVRSDP GGGGLAYAAY ANGLGAQLP- 651 700 ENSTTRP00000010954/1-565 GLQPSD---- -TSGSSSSSS SSSSSSSSSS GLRRKGSRDC SVCFESEVIA ENSBTAP00000022119/1-468 GLQPSSSDAS GSSSSSSSSS SSSSSSSSSS GLRRKGSRDC SVCFESEVIA BACU016039/1-544 GLQPSD---- -TSGSSSSSS SSSSSSSSSS GLRRKGSRDC SVCFESEVIA bmy_16746T0/1-687 GLQPSD---- -TSGSSSSSS SSSSSSSSSS GLRRKGSRDC SVCFESEVIA ENSP00000329918/1-569 GLQPSD---- -TSGSSSSSS SSSSSSSSSS GLRRKGSRDC SVCFESEVIA 701 750 ENSTTRP00000010954/1-565 ALVPCGHNLF CMECANRICE KSEPECPVCH TAVTQAIRIF S ENSBTAP00000022119/1-468 ALVPCGHNLF CMECANRICE KSEPECPVCH TAVTQAIRIF S BACU016039/1-544 ALVPCGHNLF CMECANRICE KSEPECPVCH TAVTQAIRIF S bmy_16746T0/1-687 ALVPCGHNLF CMECANRICE KSEPECPVCH TAVTQAIRIF S ENSP00000329918/1-569 ALVPCGHNLF CMECANRICE KSEPECPVCH TAVTQAIRIF S