KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:15 2014 Check: 00 .. Name: ENSP00000350541/1-990 Len: 998 Check: 2197 Weight: 1.00 Name: ENSBTAP00000022140/1-989 Len: 998 Check: 4494 Weight: 1.00 Name: ENSTTRP00000000768/1-867 Len: 998 Check: 1140 Weight: 1.00 Name: BACU014984/1-873 Len: 998 Check: 1827 Weight: 1.00 Name: bmy_07269T0/1-600 Len: 998 Check: 2807 Weight: 1.00 // 1 50 ENSP00000350541/1-990 MGPPSSSGFY VSRAVALLLA GLVAALLLAL AVLAALYGHC ERVPPSELPG ENSBTAP00000022140/1-989 MGPPSSSGFY VSRAVALLLA GLAAALLLAL AVLASLYGHC ARVPPSELRD ENSTTRP00000000768/1-867 ---------- ---------- ---------- ---------- ---------- BACU014984/1-873 MGPPSSSGFY VSRVVALLLA GLAAGLLLAL AVLAALYGHC ERVPPSELHD bmy_07269T0/1-600 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000350541/1-990 LRDLEAESSP PLRQKPTPTP KPSSARELAV TTTPSNWRPP GPWDQLRLPP ENSBTAP00000022140/1-989 GGAPAAAPSL PGKQEP--TS QPGPTPEPDV AATRSSWRPP GPWDQLRLPP ENSTTRP00000000768/1-867 ---------- ---------- ---------- ---------- ---------- BACU014984/1-873 RGGPHAAPSP PGRQEPARTP KPGPTLETEV APTPRNWRPP GPWDQLRLPP bmy_07269T0/1-600 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000350541/1-990 WLVPLHYDLE LWPQLRPDEL PAGSLPFTGR VNITVRCTVA TSRLLLHSLF ENSBTAP00000022140/1-989 WLVPLHYELE LWPRLRPDDL SASALRFTGR VNITVRCTTA TARLLLHSLF ENSTTRP00000000768/1-867 ---------- ---------- ----LRFTGR VNITVRCIAA TARLLLHSLF BACU014984/1-873 WLVPLHYELE LWPRLRPEEL SAPALRFTGR VNITVRCIAA TARLLLHSLF bmy_07269T0/1-600 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000350541/1-990 QDCERAEVRG PLSPGTGNAT VGRVPVDDVW FALDTEYMVL ELSEPLKPGS ENSBTAP00000022140/1-989 LDCESAEVRG PLSLDAGDAT AGRVSVVEMW FAVDMQYLVL ELGEALQPGS ENSTTRP00000000768/1-867 LDCESAEVRG PLFPGAGDAT VGRVLVDEVW FALDMQYMVL ELGEALQPGS BACU014984/1-873 LDCESAEVRG PLSPDAGDAT VGRVPVDEVW FALDMQYMVL ELGEALQPGS bmy_07269T0/1-600 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000350541/1-990 SYELQLSFSG LVKEDLREGL FLNVYTDQGE RRALLASQLE PTFARYVFPC ENSBTAP00000022140/1-989 LYELQLSFSG PVSQDTREGL FLNLYTDQGE RRALLASHME PTFARNVFPC ENSTTRP00000000768/1-867 RYELQLSFSG PVYQDTREGL FLNLYTDQGE RRALLASQME PTFARNVFPC BACU014984/1-873 RYELQLSFSG PVYQDTREGL FLNLYTDQGE RRALLASQME PTFARNVFPC bmy_07269T0/1-600 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000350541/1-990 FDEPALKATF NITMIHHPSY VALSNMPKLG QSEKEDVNGS KWTVTTFSTT ENSBTAP00000022140/1-989 FDEPALKATF NITVIHHPRY VALSNMPKLS QSEKEDVNGS KWTVTTFHTT ENSTTRP00000000768/1-867 FDEPALKATF NITVIHHPSY VALSNMPKLG QSEKEDVNGS KWTVTTFHTT BACU014984/1-873 FDEPALKATF NITVIHHPSY VALSNMPKLG QSEKEDVNGS KWTVTTFHTT bmy_07269T0/1-600 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000350541/1-990 PHMPTYLVAF VICDYDHVNR TERGKEIRIW ARKDAIANGS ADFALNITGP ENSBTAP00000022140/1-989 PHMPTYLAAF VICDYEHIGR IERGKEIRIW ARKDAIADGN ADFALNITGP ENSTTRP00000000768/1-867 PHMPTYLAAF AICDYEHVSR TERGKEIRIW ARKEAIAAGN ADFALNITGP BACU014984/1-873 PHMPTYLAAF AICDYEHVSR TERGKEIRIW ARKEAIAAGN ADFALNITGP bmy_07269T0/1-600 ---------- ---------- ------IRIW ARKEAIAAGN ADFALNITGP 351 400 ENSP00000350541/1-990 IFSFLEDLFN ISYSLPKTDI IALPSFDNHA MENWGLMIFD ESGLLLEPKD ENSBTAP00000022140/1-989 IFSFLEDLFN ISYPLPKTDI IALPTFDNRA MENWGLLIFD ESLLLLQPND ENSTTRP00000000768/1-867 IFSFLEDLFN ISYPLPKTDI IALPTFDNRA MENWGLLMFD ESLLLLQPND BACU014984/1-873 IFSFLEDLFN ISYPLPKT-- --VSELAPLA SHHYVLHLPK HTRACLFFLC bmy_07269T0/1-600 IFSFLEDLFN ISYPLPKT-- ---------- --DYTINI-- ---------- 401 450 ENSP00000350541/1-990 QLTEKKTLIS YVVSHEIGHQ WFGNLVTMNW WNNIWLNEGF ASYFEFEVIN ENSBTAP00000022140/1-989 KLTEKKIMIS YIVSHEIGHQ WFGNLVTMNW WNNIWLNEGF ASYFEFGIIN ENSTTRP00000000768/1-867 KLTEKKTVIS YIVSHEIGHQ WFGNLVTMNW WNNIWLNEGF ASYFEFGVIN BACU014984/1-873 IVPCDQIFFS QL------QK WFGNLVTMNW WNNIWLNEGF ASYFEFGVIN bmy_07269T0/1-600 ---------- ---------- ---------- -NQLPLNA-- ---------- 451 500 ENSP00000350541/1-990 YFNPKLPRNE IFFSNILHNI LREDHALVTR AVAMKVENF- KTSEIQELFD ENSBTAP00000022140/1-989 HFNPKLPMNE IFFSNILHGV LREDHALVSR AVSMKVESFT ETNEIDELFD ENSTTRP00000000768/1-867 DFNPKLPRNE IFFSNILHGV LREDHALVSR AVSMKVENFT ETNEINELFD BACU014984/1-873 YFNPKLPRNE IFFSNILHGV LREDHALVSR AVSMKVENFT ETNEINELFD bmy_07269T0/1-600 ---TKMAKNE VFFSNILHGV LREDHALVSR AVSMKVENFT ETNEINELFD 501 550 ENSP00000350541/1-990 IFTYSKGASM ARMLSCFLNE HLFVSALKSY LKTFSYSNAE QDDLWRHFQM ENSBTAP00000022140/1-989 LITYNKGASL ARMLSSFLNE KIFISALKSY LETFSYSNAE QDDLWRHFQM ENSTTRP00000000768/1-867 LFTYNKGASL ARMLSSFLNE KIFISALKSY LETFSYSNAE QDDLWRHFQM BACU014984/1-873 LFTYNKGASL ARMLSSFLNE KIFISALKSY LETFSYSNAE QDDLWRHFQM bmy_07269T0/1-600 LFTYNKGASL ARMLSSFLNE KIFISALKSY LETFSYSNAE QDDLWRHFQM 551 600 ENSP00000350541/1-990 AIDDQSTVIL PATIKNIMDS WTHQSGFPVI TLNVSTGVMK QEPFYLENIK ENSBTAP00000022140/1-989 AIDDQSKILL PATVKSIMDS WTHQSGFPVI TLNVSTGVMK QEPFYLGKVK ENSTTRP00000000768/1-867 AIDDQSKILL PATVKSIMDS WTHQSGFPVI TLNVSTGVMK QEPFYLGKVK BACU014984/1-873 AIDDQSKILL PATVKSIMDS WTHQSGFPVI TLNVSTGVMK QEPFYLGKVK bmy_07269T0/1-600 AIDDQSKILL PATVKSIMDS WTHQSGFPVI TLNVSTGVMK QEPFYLGKVK 601 650 ENSP00000350541/1-990 NRTLLTSNDT WIVPILWIKN GTTQPLVWLD QSS------- KVFPEMQVSD ENSBTAP00000022140/1-989 NQTLLTHNDT WIIPILWMKN GTTQSLVWLD KSS------- KVFPEMQISD ENSTTRP00000000768/1-867 NQTLLTHNDT WIVPILWIKN GTTQSLVWLD KSS------- KVFPEMRVSD BACU014984/1-873 NQTLLTH--- ---------- ---------- ---------- ---------- bmy_07269T0/1-600 NQTLLTHRRG ESLRWRSILK CLSSIFFLTD YSTLLAQIAL EVFPEMQVSD 651 700 ENSP00000350541/1-990 SDHDWVILNL NMTGYYRVNY DKLGWKKLNQ QLEKDPKAIP VIHRLQLIDD ENSBTAP00000022140/1-989 SDHDWVILNL NMTGYYRVNY DKLGWKKLNQ QLEKDHKAIP VIHRLQLVDD ENSTTRP00000000768/1-867 SDHDWVILNL NMTGYYRVNY DKFGWKKLNQ QLEKDPKAIP VIHRLQLVDD BACU014984/1-873 ---------- ------RVNY DKFGWKKLNQ QLEKDPKAIP VIHRLQLVDD bmy_07269T0/1-600 SDHDWVILNL NMTGYYRVNY DKFGWKKLNQ QLEKDPKAIP VIHRLQLVDD 701 750 ENSP00000350541/1-990 AFSLSKNNYI EIETALELTK YLAEEDEIIV WHTVLVNLVT RDLVSEVNIY ENSBTAP00000022140/1-989 AFSLSKNDYI EIETALDLTK YLAEEDEIIV WHAVLMNLVT RDLVSDGNNH ENSTTRP00000000768/1-867 AFSLSKSSYI EIETALDLTK YLAEEDEIIV WHAVLVNLVT RDLVSDVNSH BACU014984/1-873 AFSLSKNSYI EIETALDLTK YLAEEDEIIV WHAVLVNLVT RDLVSDVNNH bmy_07269T0/1-600 AFSLSKNSYI EIETALDLTK YLAEEDEIIV WHAVLVNLVT RDLVSDVNNH 751 800 ENSP00000350541/1-990 DIYSLLKRYL LKRLNLIWNI YSTIIRENVL ALQDDYLALI SLEKLFVTAC ENSBTAP00000022140/1-989 DIYPLLKKYL LKRLISIWNT YSTMIRENVT ALQEDYLALI SLDKVFGTAC ENSTTRP00000000768/1-867 DIYPLLKKYL LKRLISVWNT YSTIIRENVA TLQDDYLALI SLEKLFGTAC BACU014984/1-873 DIYPLLKKYL LKRLISIWNT YSTIIRENVA TLQDDYLALI SLEKLFGTAC bmy_07269T0/1-600 DIYPLLKKYL LKRLISIWNT YSTIIRENVA TLQDDYLALI SLEKLFGTAC 801 850 ENSP00000350541/1-990 WLGLEDCLQL SKELFAKWVD HPENEIPYPI KDVVLCYGIA LGSDKEWDIL ENSBTAP00000022140/1-989 LLGLEDCLQL SRELFRNWMN HPENEIPNPI KNVILCYGIA LGNDKEWDFL ENSTTRP00000000768/1-867 WLGLEDCLQL SRDLFRNWMN HPENEIPYPI KNVILCYGIA LGNDKEWDFL BACU014984/1-873 WLGLEDCLQL SRDLFRNWMN HPENE----- ---------- ---------- bmy_07269T0/1-600 WLGLEDCLQL SRDLFRNWMN HPENEIPYPI KNVILCYGIA LGNDKEWDFL 851 900 ENSP00000350541/1-990 LNTYTNTTNK EEKIQLAYAM SCSKDPWILN RYMEYAISTS PFTSNETNII ENSBTAP00000022140/1-989 LKIYNNNTEE EERIQLAYAM SCSKDPRILN RYMDYAITVS PFTFNETNVI ENSTTRP00000000768/1-867 LNIYNNKTKE EERIQLAYAM SCSKDPWILN RYMEYAITTS PSTFNETNII BACU014984/1-873 ---------- ---------- ---------- -YMEYAITTS PLTFNETNII bmy_07269T0/1-600 LNIYNNKTKE EERIQLAYAM SCSKDPWILN RYMEYAITTS PFTFNETNII 901 950 ENSP00000350541/1-990 EVVASSEVGR YVAKDFLVNN WQAVSKRYGT QSLINLIYTI GRTVTTDLQI ENSBTAP00000022140/1-989 EAVAASEVGR YVAKDFLINN WQAVSERYGT QSLVTLLYVI GRTISTDLQI ENSTTRP00000000768/1-867 EAVAASEVGR YVAKDFLINN WQAVSERYGT QSLVTLLYVI GRTISTDLQI BACU014984/1-873 EAVAASEVGR YVAKDFLINN WQAVSERYGT QSLVTLLYVI GRTISTDLQI bmy_07269T0/1-600 EAVAASEVGR YVAKDFLINN WQAVSERYGT QSLVTLLYVI GRTISTDLQI 951 1000 ENSP00000350541/1-990 VELQQFFSNM LEEHQRIRVH ANLQTIKNEN LKNKKLSARI AAWLRRNT ENSBTAP00000022140/1-989 SELQQFCSNM LEEHQRLTVQ AKLQTIKNEN LKNKERSARI AAWLRKNT ENSTTRP00000000768/1-867 LELQQFCSNM LEEHQRLTVQ AKLQTIKNEN LKNKERSARI AAWLQKNT BACU014984/1-873 LELQQFCSNM LEEHQRLTVQ AKLQTIKNEN LKNKERSARI AAWLQKNT bmy_07269T0/1-600 LELQQFCSNM LEEHQRLTVQ AKLQTIKNEN LKNKERSARI AAWLQKNT