KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:16:17 2014 Check: 00 .. Name: ENSP00000179259/1-270 Len: 303 Check: 9432 Weight: 1.00 Name: ENSBTAP00000022146/1-270 Len: 303 Check: 8886 Weight: 1.00 Name: bmy_12534T0/1-276 Len: 303 Check: 1892 Weight: 1.00 Name: ENSTTRP00000015676/1-269 Len: 303 Check: 8269 Weight: 1.00 // 1 50 ENSP00000179259/1-270 ---------- ---------- ---------- ---MARFALT VVRHGETRFN ENSBTAP00000022146/1-270 ---------- ---------- ---------- ---MTRFALT VVRHGETRLN bmy_12534T0/1-276 GCGERSAGRL VRSAATVRAA RAAFASLCPG AGGMTRFALT VVRHGETRLN ENSTTRP00000015676/1-269 ---------- ---------- ---------- ---MTRFALT VVRHGETRLN 51 100 ENSP00000179259/1-270 KEKIIQGQGV DEPLSETGFK QAAAAGIFLN NVKFTHAFSS DLMRTKQTMH ENSBTAP00000022146/1-270 KEKIIQGQGI DEPLSETGFK QAAAAGIFLK DVKFTHVFSS DLTRTKQTVH bmy_12534T0/1-276 KEKILQGQGI DEPLSETGFK QAAAAGIFLN NVKFTHIFSS DLMRTKQ--- ENSTTRP00000015676/1-269 KEKILQGQGI DEPLSETGFK QAAAAGIFLN NVKFTHIFSS DLMRTKQTVH 101 150 ENSP00000179259/1-270 GILERSKFCK DMTVKYDSRL RERKYGVVEG KALSELRAMA KAAREECPVF ENSBTAP00000022146/1-270 GILEKSKFCK DMTVKYDSRL RERKYGVAEG RPLSELRAMA KAAGEECPAF bmy_12534T0/1-276 ---------- ---------- ---KYGVAEG WPLSELRAMA KAAGQECPVF ENSTTRP00000015676/1-269 GILEKSKFCK DMTVKYDSRL RERKYGVAEG SPLSELRAMA KAAGQECPVF 151 200 ENSP00000179259/1-270 TPPGGETLDQ VKMRGIDFFE FLCQLILKEA DQKEQFSQGS PSNCLETSLA ENSBTAP00000022146/1-270 TPPGGETLDQ LKRRGKDFFE FLCQLILKEA GQNEQFSQEA PSSCLESSLA bmy_12534T0/1-276 TPPGGETLDQ VKMRGKDFFE FLCQLILKEA GQNEQFSQEA PSNCLESSLA ENSTTRP00000015676/1-269 TPPGGETLDQ VKMRGKDFFE FLCQLILKEA GQNEQFSQEA PSDCLESSLA 201 250 ENSP00000179259/1-270 EIFPLGKNHS SKVNSDSGIP GLAASVLVVS HGAYMRSLFD YFLTDLKCSL ENSBTAP00000022146/1-270 EIFPLGKNCA STFNSDSGTP GLAASVLVVS HGAYIRSLLD YFLTDLKCSF bmy_12534T0/1-276 EIFPLGKNCA SKFNSDSGAP GLVASVLVVS HGAYMRSLLD YFLTDLKCSF ENSTTRP00000015676/1-269 EIFPLGKNCT STFNSDSGAP GLVASVLVVS HGAYMRSLLD YFLTDLKCSF 251 300 ENSP00000179259/1-270 PATLSRSELM SVTPNTGMSL FIINFEEGRE VKPTVQCICM NLQDHLNGLT ENSBTAP00000022146/1-270 PATLSRSELT SVSPNTGMTV FILNFEKGGK GRPTAQCVCV NLQGHLAGVN bmy_12534T0/1-276 PVTLSRSELT SVSPNTGMSV FIINFETG-E VKPTTQCVCV NLQGHLTGVT ENSTTRP00000015676/1-269 PVTLSRSELT SVSPNTGMSV FIINCEKG-E VKPTTQCVCV NLQGHLTGVT 301 350 ENSP00000179259/1-270 ETR ENSBTAP00000022146/1-270 KTP bmy_12534T0/1-276 KTH ENSTTRP00000015676/1-269 KVH