KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:22 2014 Check: 00 .. Name: bmy_09887T0/1-689 Len: 1216 Check: 429 Weight: 1.00 Name: ENSP00000381198/1-1216 Len: 1216 Check: 4584 Weight: 1.00 Name: ENSBTAP00000022164/1-1212 Len: 1216 Check: 8120 Weight: 1.00 Name: ENSTTRP00000012835/1-1211 Len: 1216 Check: 4650 Weight: 1.00 Name: BACU014910/1-878 Len: 1216 Check: 9961 Weight: 1.00 // 1 50 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSP00000381198/1-1216 MAAMAPGGSG SGGGVNPFLS DSDEDDDEVA ATEERRAVLR LGAGSGLDPG ENSBTAP00000022164/1-1212 MAAMAPG--G GGGGVNPFLS DSDEDEDEVS ATDERRAGLR LGAGGGLDPG ENSTTRP00000012835/1-1211 MAAMAPG--G GGGGVNPFLS DSDEDDDEVS GTDERRAGLR LSSGVGLDPG BACU014910/1-878 MAAMAPG--G GGGGVNPFLS DSDEDDDEVS ATDERRAGLR LSSGVGLDPG 51 100 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSP00000381198/1-1216 SAGSLSPQDP VALGSSARPG LPGEASAAAV ALGGTGETPA RLSIDAIAAQ ENSBTAP00000022164/1-1212 SADSLSPQDP VALGSSARAG LPGEAAAA-- ALGGPGETPA RLSIDAIAAQ ENSTTRP00000012835/1-1211 SADSLSPQDP VALGSSARPG LPGEASAAAV ALGGTGETPA RLSIDAIAAQ BACU014910/1-878 SADSLSPQDP VALGSSARPG LPGEASAAAV ALGVTGETPA RLSVDAIAAQ 101 150 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSP00000381198/1-1216 LLRDQYLLTA LELHTELLES GRELPRLRDY FSNPGNFERQ SGTPPGMGAP ENSBTAP00000022164/1-1212 LLRDQYLLTA LELHTELLES GRELPRLRDY FSNPGNFERQ SGTPPGTGAP ENSTTRP00000012835/1-1211 LLRDQYLLTA LELHTELLES GRELPRLRDY FSNPGNFERQ SGTPPGLGAP BACU014910/1-878 LLRDQYLLTA LELHTELLES GRELPRLRDY FSNPGNFERQ SGTPPGLGAP 151 200 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSP00000381198/1-1216 GVPGAAGVGG AGGREPSTAS GGGQLNRAGS ISTLDSLDFA RYSDDGNRET ENSBTAP00000022164/1-1212 GVPGAAGLGG AGGREPSTTS GGGQLNRAGS ISTLDSLDFA RYSDDGNRET ENSTTRP00000012835/1-1211 GIPGAAGVGG AGGREPSTTS GGGQLNRAGE ISTLDSLNFA RISMDGTRET BACU014910/1-878 GIPGAAGVGG AGGREPSTTS GGGQLNRAGS ISTLDSLDFA RYSDDGNRET 201 250 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSP00000381198/1-1216 DEKVAVLEFE LRKAKETIQA LRANLTKAAE HEVPLQERKN YKSSPEIQEP ENSBTAP00000022164/1-1212 DERVAVLEFE LRKAKETIQA LRANLTKAAE HEVPLQERKN YKSSPEIQEP ENSTTRP00000012835/1-1211 DGRVPVLEFE LRKAKETIQA LRANLTKAAE HEVPLQERKN YKSSPEIQEP BACU014910/1-878 DERVAVLEFE LRKAKETIQA LRANLTKAAE HEVPLQERKN YKSSPEIQEP 251 300 bmy_09887T0/1-689 ---------- ---------- ---METITF- ---------L WGGQGIL--- ENSP00000381198/1-1216 IKPLEKRALN FLVNEFLLKN NYKLTSITFS DENDDQDFEL WDDVGLNIPK ENSBTAP00000022164/1-1212 IKPLEKRALN FLVNEFLLKN NYKLTSITFS DENDDQDFEL WDDVGLNIPK ENSTTRP00000012835/1-1211 IKPLEKRALN FLVNEFLLKN NYKLTSITFS DENDDQDFEL WDDVGLNIPK BACU014910/1-878 IKPLEKRALN FLVNEFLLKN NYKLTSITFS DENDDQDFEL WDDVGLNIPK 301 350 bmy_09887T0/1-689 ---------- FG-YNVTK-- ---------- ---------- ---------- ENSP00000381198/1-1216 PPDLLQLYRD FGNHQVTGKD LVDVASGVEE DELEALTPII SNLPPTLETP ENSBTAP00000022164/1-1212 PPDLLQLYRD FGNHQVTGKD LVDVASGVDE DELEALTPVL GNLPSTLETP ENSTTRP00000012835/1-1211 PPDLLQLYRD FGNHQVTGKD LVDVASGVEE DELEALTPIL GNLPPTLETP BACU014910/1-878 PPDLLQLYRD FGNHQVTGKD LVDVASGVEE DELEALTPVL GNLPPTLETP 351 400 bmy_09887T0/1-689 ---------- ---------- ----ALFTNL KHL-----FL ---------- ENSP00000381198/1-1216 QPAENSMLVQ KLEDKISLLN SEKWSLMEQI RRLKSEMDFL KNEHFAIPAV ENSBTAP00000022164/1-1212 QTVENSLLVQ KLEDKISLLN SEKWSLMEQI RRLESEMDFL KNEHFASPVV ENSTTRP00000012835/1-1211 AAVENSLLVK KLDDK-SLLN SEKWSLMEQI RRLESEMDFL KNEHFASPVV BACU014910/1-878 QTVENSLLVK KLEDKISLLN SEKWSLMEQI RRLESEMDFL RNEHFASPVV 401 450 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ---------- ENSP00000381198/1-1216 CDSVQPPLDQ LPHKDSEDSG QHPDVNSSDK GKNTDIHLSI SDEADSTIPK ENSBTAP00000022164/1-1212 CDSVQPSLDQ SPHKDSEDSG QNSVINSLDK GENKDVHLSK SDEVDSTVPK ENSTTRP00000012835/1-1211 CDSVQPSLDQ SPHKDSEDSG QNSVINSSDM GENKDIHLSK SDEIDSTIPK BACU014910/1-878 CDSVQPSLDQ SSHKDSGDSG QNSVINSSDK GENKDTHLSK SDEIDSTIPK 451 500 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- -ALLTYIF-- ENSP00000381198/1-1216 ENSPNSFPRR EREGMPPSSL SSKKTVHFDK PNRKLSPAFH QALLSFCRMS ENSBTAP00000022164/1-1212 ETFPHSFPRR EREGIPSSSP SSKNTVHFDK PNRKLSPAFH QALLSFCRMS ENSTTRP00000012835/1-1211 ENFPRSFPRR EREGMP-SSP SNKSTVHFDK PNRKLSPAFH QALLSFCRMS BACU014910/1-878 ENFPNSFPRR EREGMPSSSP SNKNTVHFDK PNRKLSPAFH QALLSFCRMS 501 550 bmy_09887T0/1-689 ---------- ---------- ---------- ---------- ELIPLILCTA ENSP00000381198/1-1216 ADSRLGYEVS RIADSEKSVM LMLGRCLPHI VPNVLLAKRE ELIPLILCTA ENSBTAP00000022164/1-1212 ADSRLGSEVS RIADSEASVM LMLGRCLPHI VPNVLLAKRE ELIPLILCTA ENSTTRP00000012835/1-1211 ADSRLGSEVS RIADSEKSVM LMLGRCLPHI VPNVLLAKRE ELIPLILCTA BACU014910/1-878 ADSRLGSEVS RIADSEKSVM LMLGRCLPHI VPNVLLAKRE ELIPLILCTA 551 600 bmy_09887T0/1-689 CLHPEPKERD QLLHILFNLI KRPDDEQR-- ---------- --------LS ENSP00000381198/1-1216 CLHPEPKERD QLLHILFNLI KRPDDEQRQM ILTGCVAFAR HVGPTRVEAE ENSBTAP00000022164/1-1212 CLHPEPKERD QLLHILFNLI KRPDDEQRQM ILTGCVAFAR HVGPTRVEAE ENSTTRP00000012835/1-1211 CLHPEPKERD QLLHILFNLI KRPDDEQRQM ILTGCVAFAR HVGPTRVEAE BACU014910/1-878 CLHPEPKERD QLLHILFNLI KRPDDEQRQM ILTGCVAFAR HVGPTRVEAE 601 650 bmy_09887T0/1-689 LIPLILIQIN HKYPERRLLV AESCGALAPY LPKEIRSSLV LSMLQQMLME ENSP00000381198/1-1216 LLPQCWEQIN HKYPERRLLV AESCGALAPY LPKEIRSSLV LSMLQQMLME ENSBTAP00000022164/1-1212 LLPQCWEQIN HKYPERRLLV AESCGALAPY LPKEIRSSLV LSMLQQMLME ENSTTRP00000012835/1-1211 LLPQCWEQIN HKYPERRLLV AESCGALAPY LPKEIRSSLV LSMLQQMLME BACU014910/1-878 LLPQCWEQIN HKYPERRLLV AESCGALAPY LPKEIRSSLV LSMLQQMLME 651 700 bmy_09887T0/1-689 DKADLVREAV IKSLGIIMGY IDDPDKYQQG FELLLSALGD PSERVVNATH ENSP00000381198/1-1216 DKADLVREAV IKSLGIIMGY IDDPDKYHQG FELLLSALGD PSERVVSATH ENSBTAP00000022164/1-1212 DKADLVREAV IKSLGIIMGY IDDPDKYQQG FELLLSALGD PSERVVSATH ENSTTRP00000012835/1-1211 DKADLVREAV IKSLGIIMGY IDDPDKYQQG FELLLSALGD PSERVVSATH BACU014910/1-878 DKADLVREAV IKSLGIIMGY IDDPDKYQQG FELLLSALGD PSERVVNATH 701 750 bmy_09887T0/1-689 QVFLPAYAAW TTELGNLQSH LIPTLLNKIE KLLREGEHGL DEHKLHMYLS ENSP00000381198/1-1216 QVFLPAYAAW TTELGNLQSH LILTLLNKIE KLLREGEHGL DEHKLHMYLS ENSBTAP00000022164/1-1212 QVFLPAYAAW TTELGNLQSH LIPTLLNKIE KLLREGEHGL DEHKLHMYLS ENSTTRP00000012835/1-1211 QVFLPAYAAW TTELGNLQSH LIPTLLNKIE KLLREGEHGL DEHKLLMYLS BACU014910/1-878 QVFLPAYAAW TTELGNLQSH LIPTLLNKIE KLLREGEHGL DEHKLHMYLS 751 800 bmy_09887T0/1-689 ALQSLIPSLF ALVLQNAPFS SKAKLHGEVP QIEVTRFPRP MSPLQDVSTI ENSP00000381198/1-1216 ALQSLIPSLF ALVLQNAPFS SKAKLHGEVP QIEVTRFPRP MSPLQDVSTI ENSBTAP00000022164/1-1212 ALQSLTPPLF ASVLQNAPFS SKAKLHGDVP QIEVTRFPRP MSPLQDVSTI ENSTTRP00000012835/1-1211 ALQSLIPSLF ALVIQNAPFS SKTKLHGEVP QIEVTRFPRP MSPLQDVSTI BACU014910/1-878 ALQSLTPSLF ALVLQNAPFS SKAKLHGEVP QTEVTRFPRP MSPLQDVSTI 801 850 bmy_09887T0/1-689 IGSREQLAVL LQLYDYQLEH EGTTGWESLL WVVNQLLPQL IEIVGKINVT ENSP00000381198/1-1216 IGSREQLAVL LQLYDYQLEQ EGTTGWESLL WVVNQLLPQL IEIVGKINVT ENSBTAP00000022164/1-1212 IGSREQLALL LQLYDYQLEH AGTTGWESLL WVVNQLLPQL IEIVGKINVA ENSTTRP00000012835/1-1211 IGSREQLAVL LQLYDYQLEH EGTTGWESLL WVVNQLLPQL IEIVGKINVT BACU014910/1-878 IGSREQLAVL LQLYDYQLEH EGTTGWESLL WVVNQLLPQL IEIVGKINVT 851 900 bmy_09887T0/1-689 STACVHEFSR FFWRLCRTFG KIFTNTKVKP QFQEILRLSE ENIDSSAGNG ENSP00000381198/1-1216 STACVHEFSR FFWRLCRTFG KIFTNTKVKP QFQEILRLSE ENIDSSAGNG ENSBTAP00000022164/1-1212 STACVHEFSR FFWRLCRTFG KIFTNTKVKP QFQEILRLSE ENIDSSAGNG ENSTTRP00000012835/1-1211 STTCVHEFSR FFWRLCRTFG KIFTNTKVKP QFQEILRLSE ENIDSSAGNG BACU014910/1-878 STACVHEFSR FFWRLCRTFG KIFTNTK--- ---------- ---------- 901 950 bmy_09887T0/1-689 VLTKATVPIY ATGVLTCYIQ EEDRKLLIGF LEDVMTLLSL SHAPLDSLKA ENSP00000381198/1-1216 VLTKATVPIY ATGVLTCYIQ EEDRKLLVGF LEDVMTLLSL SHAPLDSLKA ENSBTAP00000022164/1-1212 VLTKATVPIY ATGVLTCYIQ EEDRKLLIGF LEDVMTLLSL SHAPLDSLKA ENSTTRP00000012835/1-1211 VLTKATVPIY ATGVLTCYIQ EEDRKLLIGF LEDVMTLLSL SHAPLDSLKA BACU014910/1-878 ---------- ---------- ----KMI--- ---------- ---------- 951 1000 bmy_09887T0/1-689 SFVELGANPA YHELLLTVLW YGVVHTSALV RCTAARMFEL TLRGMSEALV ENSP00000381198/1-1216 SFVELGANPA YHELLLTVLW YGVVHTSALV RCTAARMFEL TLRGMSEALV ENSBTAP00000022164/1-1212 AFVELGANPA YHELLLTVLW YGVVHTSALV RCTAARMFEL LVKGVNETLV ENSTTRP00000012835/1-1211 SFVELGANPA YHELLLTVLW YGVVHTSALV RCTAARMFEL TLRGMSEALV BACU014910/1-878 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_09887T0/1-689 DKRVAPALVT LSSDPEFSVR IATIPAFGTI METVIQRELL ERVKMQLASF ENSP00000381198/1-1216 DKRVAPALVT LSSDPEFSVR IATIPAFGTI METVIQRELL ERVKMQLASF ENSBTAP00000022164/1-1212 AQRVVPALIT LSSDPEISVR IATIPAFGTI METVIQRELL ERVKMQLASF ENSTTRP00000012835/1-1211 DKRVAPALVT LSSDPEFSVR IATIPAFGTI METVIQRELL ERVKMQLASF BACU014910/1-878 ---------- ---------- ---------- ---------- ---------- 1051 1100 bmy_09887T0/1-689 LEDPQYQDQY SLHTEIIKTF GRVGPNAEPR FRDEFVIPHL HKLALVNNLQ ENSP00000381198/1-1216 LEDPQYQDQH SLHTEIIKTF GRVGPNAEPR FRDEFVIPHL HKLALVNNLQ ENSBTAP00000022164/1-1212 LEDPQYQDQY SLHTEIIKTF GRVGPNAEPR FRDEFVIPHL HKLALVNNLQ ENSTTRP00000012835/1-1211 LEDPQYQDQY SLHTEIIKTF GRVGPNAEPR FRDEFVIPHL HKLALVNNLQ BACU014910/1-878 ---------- ---------- ---------- ---------- ---------- 1101 1150 bmy_09887T0/1-689 IVDSKRLDIA THLFEAY--- ---IISEDLM VNHFLPGLRC LRIDMEHLSP ENSP00000381198/1-1216 IVDSKRLDIA THLFEAYSAL SCCFISEDLM VNHFLPGLRC LRTDMEHLSP ENSBTAP00000022164/1-1212 IVDSKRLDIA THLFEAYSAL SCCFISEDLM VNHFLPGLRC LRIDMEHLSP ENSTTRP00000012835/1-1211 IVDSKRLDIA THLFEAYSAL SCCFISEDLM VNHFLPGLRC LRIDMEHLSP BACU014910/1-878 ---------- ---------- ---------- ---------- ---------- 1151 1200 bmy_09887T0/1-689 EHEVILTSMI KECEQKVENK TVQEPQGSMS IAASLVSEDT KTKFLNKMGQ ENSP00000381198/1-1216 EHEVILSSMI KECEQKVENK TVQEPQGSMS IAASLVSEDT KTKFLNKMGQ ENSBTAP00000022164/1-1212 EHEVILTSMI KECEQKIENK TVQEPQGSMS IAASLVSEDA KTKFLNKMGQ ENSTTRP00000012835/1-1211 EHEVILTSM- KECEQXXXXX XXXXXXXSMS IAASLVSEDT KTKFLNKMGQ BACU014910/1-878 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_09887T0/1-689 LTTSGAMLAN VFQRKK ENSP00000381198/1-1216 LTTSGAMLAN VFQRKK ENSBTAP00000022164/1-1212 LTTSGAMLAT VFQRKK ENSTTRP00000012835/1-1211 LTTSGAMLAN VFQRKK BACU014910/1-878 ---------- ------