KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:36 2014 Check: 00 .. Name: ENSTTRP00000005994/1-1340 Len: 1541 Check: 6924 Weight: 1.00 Name: bmy_09527T0/1-1101 Len: 1541 Check: 2620 Weight: 1.00 Name: ENSP00000439625/1-1085 Len: 1541 Check: 7370 Weight: 1.00 Name: ENSBTAP00000022238/1-1108 Len: 1541 Check: 3424 Weight: 1.00 Name: BACU001113/1-1340 Len: 1541 Check: 3963 Weight: 1.00 // 1 50 ENSTTRP00000005994/1-1340 ---------- ---------- --SSRRVPRP RRSGLSPGAP GVPPRRP--- bmy_09527T0/1-1101 ---SWAAGGR VGVPRPRGPG ALSGRARPHN GRKRGSALCP AGGADRRFLR ENSP00000439625/1-1085 ---------- ---------- --------MS LGERGSPQTF GG-------- ENSBTAP00000022238/1-1108 MQADWPGRLR AG------SG RGVGEGHRGP AGELVGEEGQ LGGGQV--LG BACU001113/1-1340 MFLYWKKR-- ---------G AYALEALPGA LAEL-----E LGAVER--FS 51 100 ENSTTRP00000005994/1-1340 -----PPAPP AASSMEDRSL AEEKGL---- ---------- ---------- bmy_09527T0/1-1101 PPWGLDPASP GAARPPGRAP GCPPGTPSPA GRGVAAATGK ARYATTPTAS ENSP00000439625/1-1085 -----SSVSK GSDAGHDQSP AEKKGL---- ---------- ---------- ENSBTAP00000022238/1-1108 QRW------- ---TAEDRSL EEEKGL---- ---------- ---------- BACU001113/1-1340 --WS-STLDI IEDLGEDRSL AEEKGL---- ---------- ---------- 101 150 ENSTTRP00000005994/1-1340 CCENPDCMDK GRAAKICHHA DCQQLHRRGP LSLCEACDSK FH-GAMHYDG bmy_09527T0/1-1101 SCTAGAPSAS ARPVTASSTA PCIMMGTSAS T-----CPPK AKEGAREGAG ENSP00000439625/1-1085 RCQNPACMDK GRAAKVCHHA DCQQLHRRGP LNLCEACDSK FH-STMHYDG ENSBTAP00000022238/1-1108 RCQNPDCMDK GRAAKVCHHA DCQQLHHRGP LNLCEACDSK FH-SAMHYDG BACU001113/1-1340 CCQNPDCMDK GRAAKVCHHA DCQQLHRRGP LSLCEACDSK FH-SAMHYDG 151 200 ENSTTRP00000005994/1-1340 HVRFDLPPQG SVLARNVSTR SCPPRTSPAV DI-EEEEESS VDGKGDRKST bmy_09527T0/1-1101 TTPLPLYTEG SVLARNVSTR SCPPRTSPAV DV-EEEEESS VDGKGDRKST ENSP00000439625/1-1085 HVRFDLPPQG SVLARNVSTR SCPPRTSPAV DLEEEEEESS VDGKGDRKST ENSBTAP00000022238/1-1108 HVRFDLPPQG SVLARNVSTR SCPPRTSPAV DL-EEEEESC MDGKGDRKST BACU001113/1-1340 HVRFDLPPQG SVLARNVSTR SCPPRTSPAV DV-EEEEESS VDGKGDRKST 201 250 ENSTTRP00000005994/1-1340 GLKLSKKKAW RRHTDDPSKE CFTLKFDLNV DIETEIVPAM KKKSLGEVLL bmy_09527T0/1-1101 GLKLSKKKAW RRHTDDPSKE CFTLKFDLNV DIETEIVPAM KKKTLGEVLL ENSP00000439625/1-1085 GLKLSKKKAR RRHTDDPSKE CFTLKFDLNV DIETEIVPAM KKKSLGEVLL ENSBTAP00000022238/1-1108 GLKLSKKKAR RRHTDDPSKE CFTLKFDLNV DIETEIVPAM KKKSLGEVLL BACU001113/1-1340 GLKLSKKKAW RRHTDDPSKE CFTLKFDLNV DIETEIVPAM KKKSLGEVLL 251 300 ENSTTRP00000005994/1-1340 PVFERKGIAL GKVDIYLDQS NTPLSLTFEA YRFGGHYLRV KAPAKPGDE- bmy_09527T0/1-1101 PVFERKGIAL GKVDIYLDQS NTPLSLTFEA YRFGGHYLRV K--AKPGDEG ENSP00000439625/1-1085 PVFERKGIAL GKVDIYLDQS NTPLSLTFEA YRFGGHYLRV KAPAKPGDEG ENSBTAP00000022238/1-1108 PVFERKGIAL GKVDIYLDQS NTPLSLTFEA YRFGGHYLRV KAPAKPGDEG BACU001113/1-1340 PVFERKGIAL GKVDIYLDQS NTPLSLTFEA YRFGGHYLRV K--AKPGDEG 301 350 ENSTTRP00000005994/1-1340 KVEQGVKDSK SLSLPILRPA GAGPPTQERV DPQSRRESLD ILAPGRRRKN bmy_09527T0/1-1101 KVEQGVKDSK SLSLPILRPA GAGPPTQERV DPQSRRESLD ILAPGRRRKN ENSP00000439625/1-1085 KVEQGMKDSK SLSLPILRPA GTGPPALERV DAQSRRESLD ILAPGRRRKN ENSBTAP00000022238/1-1108 KVEQGVKDSK SLSLPILRQA GAGPPAQERV DLQSRRESLD ILAPGRRRKN BACU001113/1-1340 KVEQGVKDSK SLSLPILRPA GAGPPTQERV DPQSRRESLD IL-------- 351 400 ENSTTRP00000005994/1-1340 MSEFLGEASI PGQEPPAPSS CSLPSGSSSG SS-SSGGSDS WKNRAASRFS bmy_09527T0/1-1101 MSEFLGEASI PGQEPPAPSS CSLPSGSSSG SSSSSGGSDS WKNRAASRFS ENSP00000439625/1-1085 MSEFLGEASI PGQEPPTPSS CSLP----SG SSGSTNTGDS WKNRAASRFS ENSBTAP00000022238/1-1108 MSEFLGEASI PGQEPPTPSS CSLPSSSSSG SSSSSSGSDS WKNRAASRFS BACU001113/1-1340 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000005994/1-1340 GFFSSGPSTS AFGREVAKLE QLEGKLHAYS LFGLPRLPRR LCFDHDSWEE bmy_09527T0/1-1101 GFFSSGPSTS AFGREVDKLE QLEGKLHAYS LFGLPRLPRR LCFDHDSWEE ENSP00000439625/1-1085 GFFSSGPSTS AFGREVDKME QLEGKLHTYS LFGLPRLPRG LRFDHDSWEE ENSBTAP00000022238/1-1108 GFFSSGPSTS TYGREIDKME QLEGKLHAYG LFGLPRLPRR LRFDHDSWEE BACU001113/1-1340 ---------- ----EVDKLE QLEGKLHAYS LFGLPRLPRR LCFDHDSWEE 451 500 ENSTTRP00000005994/1-1340 EGDEEEEYED DACLRLEDSW RELIDGHEKL TRRQCHQQEA VWELLHTEAS bmy_09527T0/1-1101 EGDEEED-ED DACLRLEDSW RELIDGHEKL TRRQCHQQEA VWELLHTEAS ENSP00000439625/1-1085 EYDEDED-ED NACLRLEDSW RELIDGHEKL TRRQCHQQEA VWELLHTEAS ENSBTAP00000022238/1-1108 EGDEEED-ED DAGLRLEDSW RELIDGHEKL TRRQCHQQEA VWELLHTEAS BACU001113/1-1340 EGDEEED-ED DACLRLEDSW RELIDGHEKL TRRQCHQQEA VWELLHTEAS 501 550 ENSTTRP00000005994/1-1340 YIKKLRVITN LFLCCLLNLQ ESGLLCEVEA ERLFSNVPEI ARLHXXXXXX bmy_09527T0/1-1101 YIKKLRVITN LFLCCLLNLQ ESGLLCEVEA ERLFSNVPEI ARLH-RGLWG ENSP00000439625/1-1085 YIRKLRVIIN LFLCCLLNLQ ESGLLCEVEA ERLFSNIPEI AQLH-RRLWA ENSBTAP00000022238/1-1108 YIKKLRVITN LFLCCLLNLQ ESGLLCEVEA DRLFSNIPEI ARLH-RGLWG BACU001113/1-1340 YIKKLRVITN LFLCCLLNLQ ESGLLCEVEA ERLFSNVPEI ARLH-RGLWG 551 600 ENSTTRP00000005994/1-1340 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09527T0/1-1101 SVMAPVLEKA RRTRALLQPA DFLKGFKM-- ---------- ---------- ENSP00000439625/1-1085 SVMAPVLEKA RRTRALLQPG DFLKGFKMFG SLFKPYIRYC MEEEGCMEYM ENSBTAP00000022238/1-1108 SVMAPVLEKA RRTRALLQPG DFLKGFKMFG SLFKPYVRYC MEEEGCMEYM BACU001113/1-1340 SVMAPVLEKA RRTRALLQPA DFLKGFKMFG SLFKPYIRYC MEEESCMEYM 601 650 ENSTTRP00000005994/1-1340 XXXXXXXXXX XXXXXWAEKH QQCQRLKLSD MLAKPHQRLT KYPLLLKSVL bmy_09527T0/1-1101 ---------- -----WAEKH QQCQRLKLSD MLAKPHQRLT KYPLLLKSVL ENSP00000439625/1-1085 RGLLRDNDLF RAYITWAEKH PQCQRLKLSD MLAKPHQRLT KYPLLLKSVL ENSBTAP00000022238/1-1108 RGLLRDNDLF RTYITWAEKH QQCQRLKLSD MLAKPHQRLT KYPLLLKSVL BACU001113/1-1340 RGLLRDNDLF RAYVTWAEKH QQCQRLKLSD MLAKPHQRLT KYPLLLKSVL 651 700 ENSTTRP00000005994/1-1340 RKTDEPRAKE AVVTMIGSVE RFIHHVNACM RQRQERQRLA AVVSRIDAYE bmy_09527T0/1-1101 RKTDEPRAKE AVVTMIGSVE RFIHHVNACM RQRQERQRLA AVVSRIDAYE ENSP00000439625/1-1085 RKTEEPRAKE AVVAMIGSVE RFIHHVNACM RQRQERQRLA AVVSRIDAYE ENSBTAP00000022238/1-1108 RKTDEPRAKE AVVTMIGSVE RFIHHVNACM RQRQERQRLA AVVSRIDAYE BACU001113/1-1340 RKTDEPRAKE AVVTMIGSVE RFIHHVNACM RQRQERQRLA AVVSRIDAYE 701 750 ENSTTRP00000005994/1-1340 VVEGSNDEVD KLLKEFLHLD LTAPIPGASP EETRQLLLEG SLRMKEGKDS bmy_09527T0/1-1101 VVEGSNDEVD KLLKEFLHLD LTAPIPGASP EETRQLLLEG SLRMKEGKDS ENSP00000439625/1-1085 VVESSSDEVD KLLKEFLHLD LTAPIPGASP EETRQLLLEG SLRMKEGKDS ENSBTAP00000022238/1-1108 VVEGSNDEVD KLLKEFLHLD LTAPIPGASP EETRQLLLEG SLRMKEGKDS BACU001113/1-1340 VVEGSNDEVD KLLKEFLHLD LTAPIPGASP EETRQLLLEG SLRMKEGKDS 751 800 ENSTTRP00000005994/1-1340 KMDVYCFLFT DLLLVTKAVK KAERTKVIRP PLLVEKIVCR ELRDPGSFLL bmy_09527T0/1-1101 KMDVYCFLFT DLLLVTKAVK KAERTKVIRP PLLVEKIVCR ELRDPGSFLL ENSP00000439625/1-1085 KMDVYCFLFT DLLLVTKAVK KAERTRVIRP PLLVDKIVCR ELRDPGSFLL ENSBTAP00000022238/1-1108 KMDVYCFLFT DLLLVTKPVK KAERTKVIRP PLLVDKIVCR ELRDPGSFLL BACU001113/1-1340 KMDVYCFLFT DLLLVTKAVK KAERTKVIRP PLLVEKIVCR ELRDPGSFLL 801 850 ENSTTRP00000005994/1-1340 IYLNEFHSAV GAYTFQASGQ ALCRGWVDAI YDAQSQLQQL RVQEHPGSQQ bmy_09527T0/1-1101 IYLNEFHSAV GAYTFQASGQ TLCRGWVDAI YDAQNQLQQL RVQEHPGGQQ ENSP00000439625/1-1085 IYLNEFHSAV GAYTFQASGQ ALCRGWVDTI YNAQNQLQQL RAQEPPGSQQ ENSBTAP00000022238/1-1108 IYLNEFHSAV GAYTFQASGQ ALCRGWVDAI YNAQNQLQQL RVQEHPGDQQ BACU001113/1-1340 IYLNEFHSAV GAYTFQASGQ ALCRGWVDAI YDAQNQLQQL RVQEHPGGQQ 851 900 ENSTTRP00000005994/1-1340 HLQSLEEEED GPED------ EDEEGGESSA SAASSPTALR KSSSSLDSQR bmy_09527T0/1-1101 HLQSLAEEED EQEEEEEEED EEEEGGESST SAASSPTILR KSSNSLDSQR ENSP00000439625/1-1085 PLQSLEEEED EQEEEEEEEE EEEEGEDSGT SAASSPTIMR KSSGSPDSQH ENSBTAP00000022238/1-1108 HLQSLEEEED EREEEE---- EEEEGGGSST SAASSPTILR KSSHSLDSQH BACU001113/1-1340 HLQSLAEEED EQEEEEEEED EEEEGGESST SAASSPTILR KSSNSLDSQR 901 950 ENSTTRP00000005994/1-1340 CVSDGSTETL AMVVVEPGGM LSSPEFEGGP FSSQSDETSL GTTASSVTPT bmy_09527T0/1-1101 CVSDGSTETL AMVV------ -----FEGGP FSSQSDETSL STTASSVTPT ENSP00000439625/1-1085 CASDGSTETL AMVVVEPGDT LSSPEFDSGP FSSQSDETSL STTASSATPT ENSBTAP00000022238/1-1108 CASDGSTETL AMVVVEPGEL LSSPEFRGDP FSSQSDETSL STTASSVTPT BACU001113/1-1340 CVSDGSTETL AMVVVEPGDM LSSPEFEGGP FSSQSDETSL STTASSVTPT 951 1000 ENSTTRP00000005994/1-1340 SELLPLGPVD GRSCSIDSAY GTLSPTSLQD FMAPAPTVEP ALRPPESXXX bmy_09527T0/1-1101 SELLPLGPVD GRSCSIDSAY GTLSPTSLQD FMAPAPTVEP ALRPPESSQA ENSP00000439625/1-1085 SELLPLGPVD GRSCSMDSAY GTLSPTSLQD FVAPGPMAEL VPRAPESPRV ENSBTAP00000022238/1-1108 SELLPLGPVD GRSCSMDSAY GTLSPTSLQD FMAPAPTVES APRPPELPPA BACU001113/1-1340 SELLPLGPVD GRSCSMDSAY GTLSPTSLQD FMAPAPTVEP ALRPPESSQA 1001 1050 ENSTTRP00000005994/1-1340 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09527T0/1-1101 PSPPPSPRLR RRTPVQLLPC LPHLLKSKSE ASLLQLLSGA TTRGAPPAPS ENSP00000439625/1-1085 PSPPPSPRLR RRTPVQLLSC PPHLLKSKSE ASLLQLLAGA GTHGTPSAPS ENSBTAP00000022238/1-1108 PSPPPSPRLR RRTPVQLLPC LPHLLKSKSE ASILQLLSGA TTRRVPPAPS BACU001113/1-1340 PSPPPPPRLR RRTPVQLLPC LPHLLKSKSE FSLLQLLSGA TTRGAPPAPS 1051 1100 ENSTTRP00000005994/1-1340 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09527T0/1-1101 RSLSELCLAA TVPGTRTQGS PQEAGPSWDC QGAPGPGSGP ELSELEGGAG ENSP00000439625/1-1085 RSLSELCLAV PAPGIRTQGS PQEAGPSWDC RGAPSPGSGP ------GLVG ENSBTAP00000022238/1-1108 RSLSEVCLAA TVPGTRTRGS CQEAGPSWYC QGAPGPGH-- QLAELEGRAH BACU001113/1-1340 RSLSELCLAA TVPGTRTQGS PQEAGPSWDC QGAPGPGSGP ELSELEGGAG 1101 1150 ENSTTRP00000005994/1-1340 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09527T0/1-1101 CPGGEPXGPT ---------- ---------- ---------- ---------- ENSP00000439625/1-1085 CLAGEPAGSH ---------- ---------- ---------- ---------- ENSBTAP00000022238/1-1108 CPGGEPEGPT ---------- ---------- ---------- ---------- BACU001113/1-1340 CPGHYLKAPC ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000005994/1-1340 XXXXXGRSEQ REAPMGATDQ GTADSTPPGV CRPLLQLLPY VCPSQMLGRT bmy_09527T0/1-1101 -------RRS RELSSGASPR V--------- ---------- ---------- ENSP00000439625/1-1085 ------RKRC GDLPSGASPR V--------- ---------- ---------- ENSBTAP00000022238/1-1108 -------RRS RELSSGASTR V--------- ---------- ---------- BACU001113/1-1340 ------TKPC GIPTCLPCPR GTFLAWENHH KTRCARCQAC DEEASQVALK 1201 1250 ENSTTRP00000005994/1-1340 PATAPRAQFA LCQTGWSGGG PGCSTTPPAA VPCP------ ---------- bmy_09527T0/1-1101 ---------- ---------- ---------- ---------- ---------- ENSP00000439625/1-1085 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022238/1-1108 ---------- ---------- ---------- ---------- ---------- BACU001113/1-1340 NCSAVADTHC GCKPGWFMDC VVSQCPHSSP FHCHPCPDCE ALHRRTRAPC 1251 1300 ENSTTRP00000005994/1-1340 ---------- ---------- ---------- ---------- ---------- bmy_09527T0/1-1101 ---------- ---------- ---------- ---------- ---------- ENSP00000439625/1-1085 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022238/1-1108 ---------- ---------- ---------- ---------- ---------- BACU001113/1-1340 SSGDTHCGTC LPGFYEYGNS CVSCPTSTLG GCPVPCVAVC GWRQVFWVQV 1301 1350 ENSTTRP00000005994/1-1340 ---------- ---------- ---------- ---------- ---------- bmy_09527T0/1-1101 ---------- ---------- ---------- ---------- ---------- ENSP00000439625/1-1085 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022238/1-1108 ---------- ---------- ---------- ---------- ---------- BACU001113/1-1340 LLAGLVVPLL LGATLTYTYR RCQLCKAMVP GEAGVEALTP LQATHLSPPD 1351 1400 ENSTTRP00000005994/1-1340 ---------- ---------- IPGVTSSASG LGSRAGIPGS PSHLHPHLAP bmy_09527T0/1-1101 ---------- ---------- ---------- ---------- ---------- ENSP00000439625/1-1085 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022238/1-1108 ---------- ---------- ---------- ---------- ---------- BACU001113/1-1340 SSPTLLVTPS SSEKVCTVQL VGSSWTSGSP QAQEAPCPEV TWSWDQLPSR 1401 1450 ENSTTRP00000005994/1-1340 MGLPPSLPPP SHPPTQTWAG LCEVAYLLSF FFYKDLYILH RKESFAFGPL bmy_09527T0/1-1101 --------QP EPPP-----G TSA------- ---------- ---------- ENSP00000439625/1-1085 --------QP EPPP-----G VSA------- ---------- ---------- ENSBTAP00000022238/1-1108 --------QP EPPP-----G ISA------- ---------- ---------- BACU001113/1-1340 TLGPPPPPSP APPA-----G SAAAMLQPGP QLYAVMDAVP ARRWKEFVRT 1451 1500 ENSTTRP00000005994/1-1340 DSGHLGPPWA PAPSLVGPRW KRLWEQKISR AEIALVLPRS TPVPCRRHEA bmy_09527T0/1-1101 ---------- --------QH RKLTLAQLYR IRTTLLL--- ---------- ENSP00000439625/1-1085 ---------- --------QH RKLTLAQLYR IRTTLLL--- ---------- ENSBTAP00000022238/1-1108 ---------- --------QH RKLTLAQLYR IRTTLLL--- ---------- BACU001113/1-1340 LGLREAEIEA VEVEVRRFRD QQYEMLKRWR QQQPAGL--- ---------- 1501 1550 ENSTTRP00000005994/1-1340 HHSPPRGALP VVPESPALPP SLCQGGPWSL CKARTPLQGG - bmy_09527T0/1-1101 ---------- ----NSTLTA SEV------- ---------- - ENSP00000439625/1-1085 ---------- ----NSTLTA SEV------- ---------- - ENSBTAP00000022238/1-1108 ---------- ----NSTLTA S--------- ---------- - BACU001113/1-1340 ---------- ----GAVYAA LERMGLDGCA EDLRSRLQRG P