KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:37 2014 Check: 00 .. Name: ENSP00000366934/1-702 Len: 738 Check: 7886 Weight: 1.00 Name: ENSBTAP00000022240/1-694 Len: 738 Check: 5564 Weight: 1.00 Name: ENSTTRP00000005996/1-687 Len: 738 Check: 7815 Weight: 1.00 Name: bmy_09526T0/1-726 Len: 738 Check: 9768 Weight: 1.00 Name: BACU001112/1-583 Len: 738 Check: 8702 Weight: 1.00 // 1 50 ENSP00000366934/1-702 MADSGLLLKR GSCRSTWLRV RKARPQLILS RRPRRRLGSL RWCGRRRLRW ENSBTAP00000022240/1-694 MADSLLLLKR VPSRHTWLRA RKARPQLMLS RRPRRRLRNL RWRSRRRLRR ENSTTRP00000005996/1-687 MADSLLLFKR GPSRSTWLRA RKARQHLILS YRPRRRLGRL RWRSRRRFRR bmy_09526T0/1-726 MADSLLLFKR GPSRSTWLRA RKARPRLILS YRPRRRLGRL RWRGRRRFRR BACU001112/1-583 MSTAEL---- ---------- ---------- ---------- ---------- 51 100 ENSP00000366934/1-702 RLLQAQASGV DWREGARQVS RAAAARRPNT ATPSPIPSPT PASEPESEPE ENSBTAP00000022240/1-694 RLLQAQAAGA DWLQGGCLVS GDAALQRLKT SARRRASSPE PAEDP----- ENSTTRP00000005996/1-687 RLLQAQAAGV DWREGGCLVS RAAAPRRHKT A----APSPR PGS------- bmy_09526T0/1-726 RLLQAQAAGA DWRESCCLVS RAAALRRPKT A----APSPR PAEDP----- BACU001112/1-583 -----SSGGP PW-------- ---------- ---------- ---------- 101 150 ENSP00000366934/1-702 LESASSCHRP LLIPPVRPVG PGRALLLLPV EQGFTFSGIC RVTCLYGQVQ ENSBTAP00000022240/1-694 ---VPSGPAI LPIPPVRPAG SGRAVLLLPL GQGFTFSGIC CVTCLYGQVQ ENSTTRP00000005996/1-687 ---APSCSAI LPIPPVRSAG SGRAVLLLPL GQGFTFSGIC RVTCLYGQVQ bmy_09526T0/1-726 ---APSCSAI LPIPPVRSAG SGRAVLLLPL GQGFTFSGIC RVTCLYGQVQ BACU001112/1-583 ---------- ---------- ---------- --GFTFSGIC RVTCLYGQVQ 151 200 ENSP00000366934/1-702 VFGFTISQGQ PAQDIFSVYT HSCLSIHALH YSQPEKSKKE LKREARNLLK ENSBTAP00000022240/1-694 VFGFTISQGQ PAQNVFSTYT HSRLTINAVH YSVHEKSKKE MKREARVLLR ENSTTRP00000005996/1-687 VFGFTISQGQ PAQNVFSTYT HCRLTINAVH YSVHEKSKKE MKREARSLLR bmy_09526T0/1-726 VFGFTISQGQ PAQNVFSTYT HSRLTINAVH YSVHEKSKKE MKREARSLLR BACU001112/1-583 VFGFTISQGQ PAQNVFSTYT HSRLTINAVH YSVHEKSKKE MKREARSLLR 201 250 ENSP00000366934/1-702 SHLNLDDRRW SMQNFSPQCS IVLLEHLKTA TVNFITSYPG SSYIFVQESP ENSBTAP00000022240/1-694 PYLNQDDRYC LMSSFSPLCS IVLLERLKTS TVNFIISHPG LSYIFVQEVR ENSTTRP00000005996/1-687 SYLNQDDRYC LMKNFSPLCS ILLLERLKTS TVNFIISHPG LSYVFVQEXX bmy_09526T0/1-726 SYLNQDDRYC LMKNFSXLCS ILLLERLKTS TVNFIISHPG LSYVFVQEIP BACU001112/1-583 SYLNQDDRYC LMKNFSPLCS ILLLERLKTS TVNFIISHPG LSYIFVQEIP 251 300 ENSP00000366934/1-702 TPQIKPEYLA LRSVGIRREK KRKGLQLTES TLSALEELVN VSCEEVDGCP ENSBTAP00000022240/1-694 TFQINSEYFA LRSVGIRREK KKTGLRLTES AFAVMEELVS ISSEEADSCP ENSTTRP00000005996/1-687 XFQ-NSEYFA LKSVGIRRER KKNGLRLTES AFSVMEELVS ISCEEADGCP bmy_09526T0/1-726 TFQINSEYFA LKSVGIRRER KKNGLRLTES AFSVMEELVS ISCEEADGCP BACU001112/1-583 TFQINSEYFA LKSVGIRRER KKNGLRLTES AFSVMDELVS VSCEEADGCP 301 350 ENSP00000366934/1-702 VILVCGSQDV GKSTFNRYLI NHLLNSLPCV DYLECDLGQT EFTPPGCISL ENSBTAP00000022240/1-694 VILVCGCQDI GKSTFNRYLI NQLLNSVSCV DYLECDLGQT EFTPPGCISL ENSTTRP00000005996/1-687 VILVCGSQDI GKSTFIRYLI NQLLNSISCI DYLECDLGQT EFTPPGCISL bmy_09526T0/1-726 VILVCGSQDI GKSTFIRYLI NQLLNSISCI DYLECDLGQT EFTPPGCISL BACU001112/1-583 VILVCGSQDI GKSTFVRYLI NQLLNSISCI DYLECDLGQT EFTPPGCISL 351 400 ENSP00000366934/1-702 LNITEPVLGP PFTHLRTPQK MVYYGKPSCK NNYENYIDIV KYVFSAYKRE ENSBTAP00000022240/1-694 LNITEPVLGP PFTHQRTPQK MVYYGKTSCK NNFENYIEVI KYVFSSYKRE ENSTTRP00000005996/1-687 LNVTEPVLGP PFTHQRTPQK MVYYGKPSCK NSFENYIEII KYVFSSYKRE bmy_09526T0/1-726 LNVTEPVLGP PFTHQRTPQK MVYYGKPSCK NNFENYIEII KYVFSSYKRE BACU001112/1-583 LNVTEPVLGP PFTHQRTPQK MVYYGKPSCK NNFENYIEII KYVFSSYKRE 401 450 ENSP00000366934/1-702 SPLIVNTMGW VSDQGLLLLI DLIRLLSPSH VVQFRSDHSK YMPDLTPQYV ENSBTAP00000022240/1-694 SPLIINTMGW VADQGLLLLI DLIRLLSPSH VVQFSSDRSK YMPDLTPDFV ENSTTRP00000005996/1-687 SPLIVNTMGW VADEGLLLLI DLIRLLSPSH VVQFSSDRGR YMPDLSPSYV bmy_09526T0/1-726 SPLIVNTMGW VADQGLLLLI DLIRLLSPSH VVQFSSDRGR YMPDLSPSYV BACU001112/1-583 SPLIVNTMGW VADQGLLLLI DLIRLLSPSH VVQFSSNRGR YMPDLSPSYV 451 500 ENSP00000366934/1-702 DDMDGLYTKS KTKMRNRRFR LAAFADALEF ADEEKESPVE FTGHKLIGVY ENSBTAP00000022240/1-694 DDMDGLYTRR RSRVRNRGFH LPEFAESLEF ADEEKEGPVM STGYKLMFVK ENSTTRP00000005996/1-687 DNMDGLYTKS TSKVRNRGFH LAEFADSLEF ADEEKENPLL FTGFKLMSVK bmy_09526T0/1-726 DDMDGLYTKS TSKVRNRGFH LAEFADNLEF ADEEKENPVL FTGYKLMSVK BACU001112/1-583 DDMDGLYTKS TSKVRNRGFH LAEFADNLEF ADEEKENPVL FTGYKLMSVK 501 550 ENSP00000366934/1-702 TDFAFRITPR NR-------- ---------- ---------- --------ES ENSBTAP00000022240/1-694 SEFVTGKTSR NR-------- ---------- ---------- --------ES ENSTTRP00000005996/1-687 SEFVSGKTPR NR-------- ---------- ---------- --------ES bmy_09526T0/1-726 SEFVSGKTPR NSGNIQNWPP GLLARGFDMK DFQGVYGRAG SADAKVGTES BACU001112/1-583 SEFVSGKTPR NR-------- ---------- ---------- --------ES 551 600 ENSP00000366934/1-702 HNKILRDLSI LSYLSQLQPP MPKPLSPLHS LTPYQVPFNA VALRITHSDV ENSBTAP00000022240/1-694 HNRILRELAV LGYLSQLQPP VPKPLRALHG LTPYQVPFNA VALRIIHADV ENSTTRP00000005996/1-687 HNKVLRELAV LSYLGQLQPP VPKPLCPLHG LTPYQVPFNA VALRIIHADV bmy_09526T0/1-726 HNKVLRELAV LSYLGQLQPP VPKPLCPLHG LTPYQVPFNA VALRIIHADV BACU001112/1-583 HNKVLRELAV LSYLGQLQPP VPKPLCPLHG LTPYQVPFNA VALRIIHADV 601 650 ENSP00000366934/1-702 APTHILYAVN ASWVGLCKIQ DDVRGYTNGP ILLAQTPICD CLGFGICRGI ENSBTAP00000022240/1-694 APTHILYAVN ASWVGLCKIL DDVRGYASGP ILLAQSPICD CVGFGICRGI ENSTTRP00000005996/1-687 APTHILYAVN ASWVGLCKIL DDVRGYASGP ILLAQTPICD CLGFGICRGI bmy_09526T0/1-726 APTHILYAVN ASWVGLCKIL DDVRGHAHGP ILLAQTPICD CLGFGICRGI BACU001112/1-583 APTHILYAVN ASWVGLCKIL DDVRGHAHGP ILLAQTPICD CLGFGICRGI 651 700 ENSP00000366934/1-702 DMEKRLYHIL TPVPPEELRT VNCLLVGAIA IPHCVLKCQR GIEGTVPYVT ENSBTAP00000022240/1-694 DMEKKLYHIL TPVPPEELRH VNCLLVGAVN IPQCVLKSQG GLEGTIPYVT ENSTTRP00000005996/1-687 DMEKRLYHIL TPVPPEELRN VNCLLVGTIS IPQCVLKSQR GLEGTIPYIT bmy_09526T0/1-726 DMEKRLYHIL TPVPPEELRN VNCLLVGTIS IPQCVLKSQR GLEGTIPYIT BACU001112/1-583 DMEKRLYHIL TPVPPEELRN VNCLLVGTIS IPQCVLKSQR GLEGTIPYIT 701 750 ENSP00000366934/1-702 TDYNFKLPGA SEKIGAREPE EAHKEKPYRR PKFCRKMK ENSBTAP00000022240/1-694 TDYNFKLPGA SEKIGARESG ATYKEKGHPK PKFYRKTY ENSTTRP00000005996/1-687 TDYNFKLPGA SEKIGAREVE ETRKEKLHPK PKFYRKTN bmy_09526T0/1-726 TDYNFKLPGA SEKIGAREIE ETRKEKVHPK PKFYRKTN BACU001112/1-583 TDYNFKLPGA SEKIGAREIE ETRKEKVHPK PKFYRKTN