KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:16:38 2014 Check: 00 .. Name: ENSP00000331867/1-841 Len: 841 Check: 1732 Weight: 1.00 Name: ENSBTAP00000022243/1-841 Len: 841 Check: 4794 Weight: 1.00 Name: bmy_09524T0/1-617 Len: 841 Check: 2161 Weight: 1.00 Name: ENSTTRP00000005999/1-833 Len: 841 Check: 7049 Weight: 1.00 // 1 50 ENSP00000331867/1-841 MLLCTARLVG LQLLISCCWA FACHSTESSP DFTLPGDYLL AGLFPLHSGC ENSBTAP00000022243/1-841 MSLWGVRLVG LQLSLSCCWA FSCHNTPSSP DFSLPGDYLL AGMFPLHSAL bmy_09524T0/1-617 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005999/1-833 MLLWGARFIG LQLFLSCCWA FSCHGTASSS DFSLPGDYLL AGQFPLHSDH 51 100 ENSP00000331867/1-841 LQVRHRPEVT LCDRSCSFNE HGYHLFQAMR LGVEEINNST ALLPNITLGY ENSBTAP00000022243/1-841 PEARGRPTVT FCDRSNSFNG HGYHLFQAMR FSIEEINNST ALLPNVTLGY bmy_09524T0/1-617 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005999/1-833 LGVRCRPTVT FCDRPSTFNG HGYHLFQAMQ FGIEEINNST ALLPNVTLGY 101 150 ENSP00000331867/1-841 QLYDVCSDSA NVYATLRVLS LPGQHHIELQ GDLLHYSPTV LAVIGPDSTN ENSBTAP00000022243/1-841 ELYDVCSDSA NMYATLSILS TLGRHYVEIQ GDPAHFSPAM VAVIGPDITK bmy_09524T0/1-617 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005999/1-833 KPYDGCSESA NVFAT---LS PPGTRYVESQ GDPAHYSPAI VAVIGPDASN 151 200 ENSP00000331867/1-841 RAATTAALLS PFLVPMISYA ASSETLSVKR QYPSFLRTIP NDKYQVETMV ENSBTAP00000022243/1-841 HALTTAALLS PFLVPLVSYG ASSMVLNARR LYPSFLRTIS SDKHQVDILV bmy_09524T0/1-617 ---------- ---------- ----MLGMKR LYPSFLRTIP SDEHQVDILM ENSTTRP00000005999/1-833 YVATTAALLS PFLMPLVSSD ASSVMLSVKR LCPSFLRTIP SDERQVEILM 201 250 ENSP00000331867/1-841 LLLQKFGWTW ISLVGSSDDY GQLGVQALEN QATGQGICIA FKDIMPFSAQ ENSBTAP00000022243/1-841 LLLQRFGWVW ISIVGGEGDY GEVGIQELEY QVTRQGICIA FRDIVPFSAR bmy_09524T0/1-617 LPLWRFGWVW ISM------- --LGVQALED QATQQGICVA FKDIVPFSAQ ENSTTRP00000005999/1-833 LPSRRFGWVW ISMVGSEGDY GQLGVQALED QATQQGICVA FKDTVPFSTQ 251 300 ENSP00000331867/1-841 VGDERMQCLM RHLAQAGATV VVVFSSRQLA RVFFESVVLT NLTGKVWVAS ENSBTAP00000022243/1-841 PGDERMQSMI RCLVQARTTV VVVYSGRQLA RVFFESVVLA KLTAKVWIAT bmy_09524T0/1-617 PGDERTQSMM RCLAQVRTTV VVVFFGRQLA RVFFESVVLA KLTAKVWVAS ENSTTRP00000005999/1-833 PGDERMQSVI RCLARARTAV VVVFSGRQLA RVFFESVVLA KLTAEVWIAS 301 350 ENSP00000331867/1-841 EAWALSRHIT GVPGIQRIGM VLGVAIQKRA VPGLKAFEEA YARADKKAPR ENSBTAP00000022243/1-841 EDWAISSHIN SVPGIQGIGT VLGMAIPHRH VPGLKEFEEA YVQADKGVLR bmy_09524T0/1-617 EDWAISRHIS NVPGIRGIGT VLGVAIPQRR VPGLKEFEEA YVGADKGALG ENSTTRP00000005999/1-833 EDWAISRHIS NVPGIWGNGT VLGVAIPQRR VPGLKEFEEP YVWADKGALG 351 400 ENSP00000331867/1-841 PCHKGSWCSS NQLCRECQAF MAHTMPKLKA FSMSSAYNAY RAVYAVAHGL ENSBTAP00000022243/1-841 PCPQGSWCNS NQLCTECWAF TAQAMPTLAE FSMSSAYNAY QAVYAVAHGL bmy_09524T0/1-617 PCLRGSWCSS KQLCREYWAS TAQKMPTLGA FSMGSAYNVY QAVYAVAHSL ENSTTRP00000005999/1-833 PCLRGSWCSS NQLCRECWAF TXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 401 450 ENSP00000331867/1-841 HQLLGCASGA CSRGRVYPWQ LLEQIHKVHF LLHKDTVAFN DNRDPLSSYN ENSBTAP00000022243/1-841 HQLLGCSSGA CSRGRVYPWQ LLEQIRKVKF LLHKDAVTFN DDGNTLSNYD bmy_09524T0/1-617 HQLLGCASGV CSRGWVYPWQ LLEQIRKVNL LLHKDIVTFN DNGDPLSSYN ENSTTRP00000005999/1-833 XXXXXXXXXX XXXGWVYPWQ LLEQILKVNF LLHKDIVTFK DNGDPLSSYN 451 500 ENSP00000331867/1-841 IIAWDWNGPK WTFTVLGSST WSPVQLNINE TKIQWHGKDN QVPKSVCSSD ENSBTAP00000022243/1-841 IIAWDWSGPN WTFRVIGSSS PFSVLLDINT TKIRWHGNDN QVPTSVCSRD bmy_09524T0/1-617 IIAWDWSGPN WTFRVIGSSL WSPVSLDINT IKIRWHGKDN QVPQSVCSRD ENSTTRP00000005999/1-833 --AWDWSGPN WTFRVVGSSF WSPVWLDINT IKIRWHGKDN WVPQSVCSSD 501 550 ENSP00000331867/1-841 CLEGHQRVVT GFHHCCFECV PCGAGTFLNK SDLYRCQPCG KEEWAPEGSQ ENSBTAP00000022243/1-841 CPEGHQRVIT GFHHCCFECV PCEAGTFLNK SDPYRCRPCG KEEWAPERSQ bmy_09524T0/1-617 CPEGHQREVM GFHHCCFECV LCEAGTFLNK SDPYSCQPCG REEWAPERSQ ENSTTRP00000005999/1-833 CPEGDQRVIM GFHHCCFECV LCESGTFLNK SDPYSCQPCG KEEWAPERSQ 551 600 ENSP00000331867/1-841 TCFPRTVVFL ALREHTSWVL LAANTLLLLL LLGTAGLFAW HLDTPVVRSA ENSBTAP00000022243/1-841 TCFPRTVVFL TWHEPVSLVL LAANTLLLLL VAGTAGLFAW HLDTPVVRSA bmy_09524T0/1-617 TCFPCTVVFL TWHEPISWVL LAANTLLLLL GAGTAGLFAW HLDTPVVRSA ENSTTRP00000005999/1-833 TCFPCTVVFL TWHEPISWVL LAANTLLLLL VAGTAGLFAW HLDMPVVRSA 601 650 ENSP00000331867/1-841 GGRLCFLMLG SLAAGSGSLY GFFGEPTRPA CLLRQALFAL GFTIFLSCLT ENSBTAP00000022243/1-841 GGRLCFFMLG SLAGGTWGLY GFFGEPTLPT CLLRQGLFSL GFAIFLSCLT bmy_09524T0/1-617 GGRLCFLMLG SLAGGSCGHY GFFGEPTLPT CLLCKGLFAL GFAIFLSCLT ENSTTRP00000005999/1-833 GGRLCILMLG SLAGGSCGHY GFFGEPTLPT CLLREGLFAL GFAIFLSCLT 651 700 ENSP00000331867/1-841 VRSFQLIIIF KFSTKVPTFY HAWVQNHGAG LFVMISSAAQ LLICLTWLVV ENSBTAP00000022243/1-841 VRSFQLVFIF KFSARLPTFF RAWVQNRGAG LFVMISSTIQ LLICLIWLAV bmy_09524T0/1-617 ICSFQLVFIF QFSAKVPTFF HAWVQNHGAG LFVVISSTTQ LLICLMWLAV ENSTTRP00000005999/1-833 IRSFQLVFIF KFSAKVPTFF RAWVQN--AG PLVVISSTTQ LLICLTWLAV 701 750 ENSP00000331867/1-841 WTPLPAREYQ RFPHLVMLEC TETNSLGFIL AFLYNGLLSI SAFACSYLGK ENSBTAP00000022243/1-841 WTPLPTREYK HFPQLVVLGC TEANSLGFML AVTYNGLLSI SAFACSYLGK bmy_09524T0/1-617 WTPLPTREYQ PFPQLV---- ---------- ---------V SAFACS---- ENSTTRP00000005999/1-833 WTPLPPREYQ PFPQLAVLDC TEANPPGFML AFAYNGLL-V SASACSYLGK 751 800 ENSP00000331867/1-841 DLPENYNEAK CVTFSLLFNF VSWIAFFTTA SVYDGKYLPA ANMMAGLSSL ENSBTAP00000022243/1-841 DLPENYNEAK CVTFSLLLNF VSWIAFFTMA IVYQGKYLPA VNALAMLSSL bmy_09524T0/1-617 ---------- ----SLLLNF VSWIAFFTTA SVYQGKYLPA ANVLAMLSSL ENSTTRP00000005999/1-833 DLPENYSEVK CVTFSLLLNF MSWIASFTMA SVYQGKHLPT VNMLAKTSSL 801 850 ENSP00000331867/1-841 SSGFGGYFLP KCYVILCRPD LNSTEHFQAS IQDYTRRCGS T ENSBTAP00000022243/1-841 SGGFSGYFLP KCYVILYRPD LNSTEHFQAS IQDYTRRCGS T bmy_09524T0/1-617 SGGFSGYFLP KCYVILCRPD LNSTEHLQAS TQDSTRRCGS T ENSTTRP00000005999/1-833 SGGFSGYFLP KCYAILCRPD LNSTEHFQAS TQDHTRRCGS T